Wall clock time and date at job start Mon Mar 30 2020 06:15:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42890 * 1 3 3 C 1.42905 * 114.00118 * 2 1 4 4 C 1.52993 * 109.32855 * 64.32000 * 3 2 1 5 5 F 1.39891 * 109.47527 * 173.64088 * 4 3 2 6 6 F 1.39899 * 109.47002 * 293.64659 * 4 3 2 7 7 F 1.39907 * 109.46900 * 53.64091 * 4 3 2 8 8 C 1.50581 * 109.39769 * 184.10207 * 3 2 1 9 9 C 1.32857 * 120.17546 * 154.70722 * 8 3 2 10 10 C 1.47169 * 119.77292 * 0.13081 * 9 8 3 11 11 C 1.32865 * 119.77179 * 340.67072 * 10 9 8 12 12 C 1.50576 * 120.17384 * 359.85634 * 11 10 9 13 13 H 1.09006 * 109.39530 * 154.98600 * 12 11 10 14 14 C 1.50694 * 109.40127 * 274.80626 * 12 11 10 15 15 H 1.07997 * 120.00388 * 120.00094 * 14 12 11 16 16 C 1.37883 * 119.99758 * 300.00248 * 14 12 11 17 17 N 1.31513 * 120.00165 * 359.97438 * 16 14 12 18 18 Si 1.86809 * 119.99733 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.46809 * 89.99951 * 18 16 14 20 20 H 1.48497 * 109.46880 * 210.00143 * 18 16 14 21 21 H 1.48500 * 109.47241 * 329.99947 * 18 16 14 22 22 H 1.09004 * 109.47142 * 53.00850 * 1 2 3 23 23 H 1.09000 * 109.47477 * 173.01147 * 1 2 3 24 24 H 1.09004 * 109.47615 * 293.01196 * 1 2 3 25 25 H 1.08005 * 119.90866 * 334.97858 * 8 3 2 26 26 H 1.08002 * 120.10999 * 180.11778 * 9 8 3 27 27 H 1.08002 * 120.11229 * 160.68869 * 10 9 8 28 28 H 1.07997 * 119.91125 * 179.88127 * 11 10 9 29 29 H 0.97000 * 119.99913 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.6446 2.0226 1.3011 5 9 2.3283 3.2411 1.3701 6 9 0.2661 2.2588 1.3319 7 9 2.0052 1.2232 2.3913 8 6 3.5078 1.1861 -0.1016 9 6 4.2241 2.1822 -0.6114 10 6 3.5491 3.4052 -1.0745 11 6 2.2486 3.3789 -1.3452 12 6 1.4673 2.1021 -1.1822 13 1 0.4176 2.3395 -1.0089 14 6 1.5930 1.2749 -2.4355 15 1 2.0237 0.2856 -2.3887 16 6 1.1581 1.7811 -3.6421 17 7 0.6332 2.9855 -3.6990 18 14 1.3146 0.7559 -5.1959 19 1 0.0861 -0.0583 -5.3774 20 1 1.4909 1.6537 -6.3655 21 1 2.4912 -0.1426 -5.0798 22 1 -0.3634 0.6184 -0.8208 23 1 -0.3634 -1.0200 -0.1250 24 1 -0.3634 0.4017 0.9459 25 1 4.0005 0.2866 0.2369 26 1 5.2980 2.0947 -0.6856 27 1 4.1091 4.3209 -1.1943 28 1 1.7506 4.2756 -1.6833 29 1 0.3270 3.3415 -4.5478 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095080787.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:09 Heat of formation + Delta-G solvation = -168.137586 kcal Electronic energy + Delta-G solvation = -19762.878827 eV Core-core repulsion = 16236.780806 eV Total energy + Delta-G solvation = -3526.098020 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.076 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -51.12549 -48.64736 -48.52752 -40.50016 -37.31221 -34.76154 -31.56374 -31.32996 -28.33483 -27.44760 -25.44267 -22.86865 -22.48776 -19.85971 -19.66053 -19.27593 -17.98250 -17.88674 -16.86227 -16.63547 -16.02023 -15.71206 -15.38852 -15.33110 -15.03904 -14.96322 -14.75658 -14.70303 -14.34417 -14.23495 -13.85784 -13.30559 -12.85459 -12.64118 -12.35188 -12.29753 -12.00076 -11.84213 -11.32379 -10.97424 -10.58849 -10.52899 -8.96098 -8.15584 -6.26439 0.59870 1.42200 1.44235 1.53754 1.77473 2.27872 2.40303 2.60354 2.93678 3.10760 3.17508 3.42463 3.96644 4.08848 4.35291 4.47852 4.52038 4.66100 4.72642 4.94021 5.15749 5.24975 5.40173 5.70069 5.77370 5.84055 6.11552 6.15589 6.29372 6.80834 7.39125 8.90413 Molecular weight = 248.08amu Principal moments of inertia in cm(-1) A = 0.028078 B = 0.010778 C = 0.009694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.981948 B = 2597.314263 C = 2887.743324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.356 6.356 3 C 0.133 3.867 4 C 0.423 3.577 5 F -0.175 7.175 6 F -0.188 7.188 7 F -0.182 7.182 8 C -0.186 4.186 9 C -0.060 4.060 10 C -0.198 4.198 11 C -0.069 4.069 12 C 0.045 3.955 13 H 0.026 0.974 14 C -0.498 4.498 15 H 0.063 0.937 16 C 0.020 3.980 17 N -0.914 5.914 18 Si 0.955 3.045 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.269 1.269 22 H 0.048 0.952 23 H 0.109 0.891 24 H 0.050 0.950 25 H 0.139 0.861 26 H 0.155 0.845 27 H 0.125 0.875 28 H 0.092 0.908 29 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.219 -2.079 6.900 7.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.274 6.274 3 C 0.091 3.909 4 C 0.368 3.632 5 F -0.157 7.157 6 F -0.170 7.170 7 F -0.163 7.163 8 C -0.204 4.204 9 C -0.078 4.078 10 C -0.216 4.216 11 C -0.088 4.088 12 C 0.027 3.973 13 H 0.044 0.956 14 C -0.535 4.535 15 H 0.081 0.919 16 C -0.180 4.180 17 N -0.553 5.553 18 Si 0.781 3.219 19 H -0.201 1.201 20 H -0.211 1.211 21 H -0.194 1.194 22 H 0.067 0.933 23 H 0.127 0.873 24 H 0.068 0.932 25 H 0.157 0.843 26 H 0.172 0.828 27 H 0.143 0.857 28 H 0.110 0.890 29 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.226 -2.113 6.813 7.829 hybrid contribution -0.620 0.187 -0.767 1.004 sum 2.607 -1.925 6.046 6.859 Atomic orbital electron populations 1.23193 0.80025 1.04347 1.00932 1.87934 1.21374 1.24063 1.94059 1.21295 0.95536 0.85363 0.88738 1.22036 0.74148 0.78377 0.88605 1.93162 1.79607 1.46142 1.96779 1.93088 1.32271 1.94709 1.96922 1.93127 1.91506 1.73595 1.58098 1.22589 0.90094 1.01236 1.06495 1.21996 1.00294 0.92494 0.93016 1.21682 0.94676 0.98218 1.06975 1.23391 0.95751 0.97355 0.92310 1.18303 0.94932 0.91406 0.92701 0.95583 1.20876 1.40835 1.00803 0.91032 0.91886 1.25647 0.94545 0.96005 1.01754 1.70043 1.41399 1.17092 1.26736 0.85585 0.78691 0.78612 0.79024 1.20093 1.21122 1.19366 0.93347 0.87299 0.93191 0.84303 0.82785 0.85666 0.88969 0.92762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.40 9.64 113.37 1.09 1.49 15 2 O -0.36 -14.79 9.28 -148.98 -1.38 -16.17 15 3 C 0.13 5.56 0.29 -11.73 0.00 5.55 15 4 C 0.42 16.71 2.17 71.98 0.16 16.86 15 5 F -0.18 -6.88 14.14 44.97 0.64 -6.24 15 6 F -0.19 -7.50 13.53 44.97 0.61 -6.89 15 7 F -0.18 -6.72 17.00 44.97 0.76 -5.95 15 8 C -0.19 -7.05 8.28 24.47 0.20 -6.84 15 9 C -0.06 -2.14 9.80 23.44 0.23 -1.91 15 10 C -0.20 -7.81 8.95 23.44 0.21 -7.60 15 11 C -0.07 -3.20 7.02 24.47 0.17 -3.03 15 12 C 0.05 2.16 0.92 -12.48 -0.01 2.15 15 13 H 0.03 1.38 6.08 -2.38 -0.01 1.36 15 14 C -0.50 -25.73 6.96 25.60 0.18 -25.56 15 15 H 0.06 3.33 7.35 -2.91 -0.02 3.30 15 16 C 0.02 1.07 5.30 84.66 0.45 1.52 15 17 N -0.91 -50.11 12.26 21.45 0.26 -49.85 15 18 Si 0.95 42.18 29.54 68.60 2.03 44.20 15 19 H -0.28 -11.88 7.11 99.48 0.71 -11.18 15 20 H -0.29 -12.48 7.11 99.48 0.71 -11.77 15 21 H -0.27 -11.67 7.11 99.48 0.71 -10.97 15 22 H 0.05 2.04 5.77 -2.38 -0.01 2.03 15 23 H 0.11 3.33 8.14 -2.39 -0.02 3.31 15 24 H 0.05 1.73 6.01 -2.39 -0.01 1.72 15 25 H 0.14 4.62 8.06 -2.91 -0.02 4.60 15 26 H 0.15 4.20 8.06 -2.91 -0.02 4.18 15 27 H 0.13 4.29 8.06 -2.91 -0.02 4.26 15 28 H 0.09 4.52 7.90 -2.91 -0.02 4.50 15 29 H 0.26 13.83 8.31 -92.71 -0.77 13.06 15 Total: -1.00 -56.62 250.12 6.76 -49.86 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: 1.17 Total: 8.40 kcal Atomic # 6 Polarization: -20.03 SS G_CDS: 2.67 Total: -17.36 kcal Atomic # 7 Polarization: -50.11 SS G_CDS: 0.26 Total: -49.85 kcal Atomic # 8 Polarization: -14.79 SS G_CDS: -1.38 Total: -16.17 kcal Atomic # 9 Polarization: -21.10 SS G_CDS: 2.01 Total: -19.09 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.20 kcal Total: -56.62 6.76 -49.86 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095080787.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.278 kcal (2) G-P(sol) polarization free energy of solvation -56.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds