Wall clock time and date at job start Mon Mar 30 2020 06:21:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30804 * 1 3 3 Si 1.86796 * 120.00071 * 2 1 4 4 H 1.48504 * 109.46990 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47309 * 299.99718 * 3 2 1 6 6 H 1.48492 * 109.47365 * 60.00209 * 3 2 1 7 7 C 1.40014 * 119.99688 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99545 * 198.01510 * 7 2 1 9 9 C 1.40743 * 120.00009 * 18.00871 * 7 2 1 10 10 C 1.41102 * 120.07028 * 204.82275 * 9 7 2 11 11 C 1.35986 * 119.92738 * 180.30029 * 10 9 7 12 12 C 1.40514 * 120.07022 * 359.43208 * 11 10 9 13 13 C 1.43198 * 119.92988 * 180.30057 * 12 11 10 14 14 C 7.57906 * 71.20796 * 194.66157 * 2 1 3 15 15 C 8.99560 * 69.80844 * 195.10070 * 2 1 3 16 16 C 1.39925 * 120.17426 * 127.72386 * 15 14 13 17 17 C 1.37861 * 119.81473 * 179.71868 * 16 15 14 18 18 C 1.38429 * 120.17835 * 0.55933 * 17 16 15 19 19 C 1.38431 * 120.36235 * 359.71157 * 18 17 16 20 20 C 1.37859 * 120.17560 * 0.02562 * 19 18 17 21 21 C 1.40505 * 120.13914 * 0.59040 * 12 11 10 22 22 C 1.35990 * 120.07270 * 359.68422 * 21 12 11 23 23 H 0.96998 * 119.99658 * 0.02562 * 1 2 3 24 24 H 1.07993 * 120.03182 * 0.02562 * 10 9 7 25 25 H 1.08001 * 119.96097 * 179.69812 * 11 10 9 26 26 H 1.07998 * 120.09249 * 359.97438 * 16 15 14 27 27 H 1.08000 * 119.90810 * 180.29051 * 17 16 15 28 28 H 1.07999 * 119.81682 * 179.69887 * 18 17 16 29 29 H 1.07997 * 119.91163 * 179.97438 * 19 18 17 30 30 H 1.07999 * 120.09134 * 179.97438 * 20 19 18 31 31 H 1.08001 * 119.96254 * 179.71180 * 21 12 11 32 32 H 1.07996 * 120.03476 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2420 1.6177 0.0000 4 1 3.7021 1.3463 0.0006 5 1 1.8834 2.3964 -1.2125 6 1 1.8834 2.3964 1.2124 7 6 2.0080 -1.2126 0.0005 8 1 3.0483 -1.2354 0.2898 9 6 1.3560 -2.4017 -0.3758 10 6 1.8274 -3.6458 0.0944 11 6 1.1989 -4.7934 -0.2760 12 6 0.0739 -4.7404 -1.1162 13 6 -0.5896 -5.9503 -1.4991 14 6 -1.1334 -6.9414 -1.8161 15 6 -1.7969 -8.1512 -2.1995 16 6 -1.3506 -8.8767 -3.3096 17 6 -1.9911 -10.0434 -3.6687 18 6 -3.0802 -10.4916 -2.9411 19 6 -3.5315 -9.7768 -1.8449 20 6 -2.8986 -8.6110 -1.4695 21 6 -0.3978 -3.5032 -1.5864 22 6 0.2297 -2.3524 -1.2242 23 1 -0.4849 0.8401 -0.0004 24 1 2.6892 -3.6868 0.7440 25 1 1.5622 -5.7463 0.0796 26 1 -0.5041 -8.5257 -3.8812 27 1 -1.6450 -10.6070 -4.5225 28 1 -3.5807 -11.4039 -3.2305 29 1 -4.3821 -10.1329 -1.2828 30 1 -3.2521 -8.0541 -0.6143 31 1 -1.2599 -3.4662 -2.2358 32 1 -0.1331 -1.4019 -1.5863 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000142051781.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:39 Heat of formation + Delta-G solvation = 66.492179 kcal Electronic energy + Delta-G solvation = -15186.616715 eV Core-core repulsion = 12655.691759 eV Total energy + Delta-G solvation = -2530.924956 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 248.090 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.95670 -39.55014 -36.07849 -34.69694 -32.37478 -31.87336 -31.51807 -30.43229 -27.35385 -24.22124 -23.36657 -22.95210 -22.69908 -19.39191 -19.32464 -17.69451 -17.12511 -16.51253 -15.90940 -15.81105 -15.50443 -14.87370 -14.47423 -14.33818 -14.06387 -14.03522 -13.83170 -13.41644 -13.00860 -12.81981 -12.44953 -12.26020 -12.21170 -12.00634 -11.69702 -11.54404 -11.31953 -10.98625 -9.90691 -9.63261 -9.35725 -9.18437 -8.78683 -6.43634 -0.00162 0.39903 0.46914 1.10361 1.37342 1.41134 1.55335 2.04639 2.08504 2.16995 2.78014 3.06265 3.29508 3.67127 4.06778 4.08700 4.26066 4.31735 4.36306 4.52081 4.60773 4.66767 4.91873 5.02437 5.13011 5.13985 5.17922 5.26537 5.49758 5.56242 5.57754 5.61384 5.84461 5.97297 6.04675 6.06787 6.18090 6.51971 6.69217 6.75886 6.88201 8.16261 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.063355 B = 0.003344 C = 0.003293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 441.844893 B = 8369.995074 C = 8499.876033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.034 3.966 3 Si 0.991 3.009 4 H -0.254 1.254 5 H -0.263 1.263 6 H -0.263 1.263 7 C -0.472 4.472 8 H 0.089 0.911 9 C 0.094 3.906 10 C -0.242 4.242 11 C -0.052 4.052 12 C -0.171 4.171 13 C -0.081 4.081 14 C -0.217 4.217 15 C 0.004 3.996 16 C -0.115 4.115 17 C -0.117 4.117 18 C -0.112 4.112 19 C -0.118 4.118 20 C -0.117 4.117 21 C -0.069 4.069 22 C -0.192 4.192 23 H 0.296 0.704 24 H 0.113 0.887 25 H 0.114 0.886 26 H 0.123 0.877 27 H 0.155 0.845 28 H 0.160 0.840 29 H 0.154 0.846 30 H 0.121 0.879 31 H 0.102 0.898 32 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.362 -12.002 -4.395 13.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C -0.185 4.185 3 Si 0.810 3.190 4 H -0.177 1.177 5 H -0.187 1.187 6 H -0.188 1.188 7 C -0.499 4.499 8 H 0.107 0.893 9 C 0.091 3.909 10 C -0.261 4.261 11 C -0.070 4.070 12 C -0.172 4.172 13 C -0.081 4.081 14 C -0.217 4.217 15 C 0.004 3.996 16 C -0.133 4.133 17 C -0.135 4.135 18 C -0.130 4.130 19 C -0.135 4.135 20 C -0.135 4.135 21 C -0.087 4.087 22 C -0.211 4.211 23 H 0.107 0.893 24 H 0.131 0.869 25 H 0.132 0.868 26 H 0.141 0.859 27 H 0.173 0.827 28 H 0.177 0.823 29 H 0.172 0.828 30 H 0.139 0.861 31 H 0.120 0.880 32 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -4.576 -11.845 -4.370 13.430 hybrid contribution 0.301 1.076 0.213 1.137 sum -4.275 -10.769 -4.158 12.310 Atomic orbital electron populations 1.69863 1.09392 1.31484 1.32146 1.26990 0.95528 1.05131 0.90804 0.85026 0.79513 0.75297 0.79162 1.17698 1.18703 1.18772 1.20015 0.98920 0.92166 1.38800 0.89266 1.18127 0.91176 0.93336 0.88242 1.20848 1.05137 0.92453 1.07701 1.20599 0.93580 0.97644 0.95194 1.15808 1.01976 0.87733 1.11710 1.19767 0.97096 0.93557 0.97642 1.19511 1.02020 0.94879 1.05271 1.16295 0.95968 0.90083 0.97230 1.21504 1.00425 0.95813 0.95604 1.21426 0.96033 0.95236 1.00798 1.21727 0.96141 1.00559 0.94549 1.21418 1.00390 0.93899 0.97829 1.21501 0.94805 0.97607 0.99584 1.20639 0.98064 0.91805 0.98209 1.20909 1.00724 0.96797 1.02707 0.89332 0.86933 0.86787 0.85924 0.82710 0.82256 0.82811 0.86134 0.87992 0.87160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -40.33 10.96 21.84 0.24 -40.09 16 2 C 0.03 1.61 5.12 85.28 0.44 2.04 16 3 Si 0.99 35.71 29.60 68.60 2.03 37.74 16 4 H -0.25 -8.91 7.11 99.48 0.71 -8.20 16 5 H -0.26 -9.12 7.11 99.48 0.71 -8.42 16 6 H -0.26 -9.06 7.11 99.48 0.71 -8.36 16 7 C -0.47 -24.32 9.01 23.31 0.21 -24.11 16 8 H 0.09 4.35 7.91 -2.91 -0.02 4.33 16 9 C 0.09 5.05 5.57 -21.26 -0.12 4.93 16 10 C -0.24 -12.00 9.72 22.45 0.22 -11.78 16 11 C -0.05 -2.47 9.70 22.30 0.22 -2.26 16 12 C -0.17 -8.45 5.78 -20.93 -0.12 -8.57 16 13 C -0.08 -3.72 13.23 30.01 0.40 -3.32 16 14 C -0.22 -8.95 13.25 30.02 0.40 -8.56 16 15 C 0.00 0.14 5.75 -21.21 -0.12 0.02 16 16 C -0.12 -3.13 9.77 22.59 0.22 -2.91 16 17 C -0.12 -2.27 10.03 22.23 0.22 -2.05 16 18 C -0.11 -1.88 10.04 22.36 0.22 -1.66 16 19 C -0.12 -2.32 10.03 22.23 0.22 -2.10 16 20 C -0.12 -3.22 9.77 22.59 0.22 -3.00 16 21 C -0.07 -3.47 9.70 22.30 0.22 -3.25 16 22 C -0.19 -10.26 8.61 22.45 0.19 -10.07 16 23 H 0.30 13.15 8.30 -92.71 -0.77 12.38 16 24 H 0.11 5.09 8.06 -2.91 -0.02 5.07 16 25 H 0.11 4.80 8.06 -2.91 -0.02 4.77 16 26 H 0.12 3.24 8.06 -2.91 -0.02 3.21 16 27 H 0.16 1.98 8.06 -2.91 -0.02 1.96 16 28 H 0.16 1.49 8.06 -2.91 -0.02 1.46 16 29 H 0.15 2.04 8.06 -2.91 -0.02 2.02 16 30 H 0.12 3.29 8.06 -2.91 -0.02 3.26 16 31 H 0.10 4.76 8.06 -2.91 -0.02 4.74 16 32 H 0.11 6.00 6.17 -2.91 -0.02 5.98 16 Total: -1.00 -61.20 293.81 6.43 -54.77 By element: Atomic # 1 Polarization: 23.09 SS G_CDS: 1.12 Total: 24.21 kcal Atomic # 6 Polarization: -79.68 SS G_CDS: 3.04 Total: -76.64 kcal Atomic # 7 Polarization: -40.33 SS G_CDS: 0.24 Total: -40.09 kcal Atomic # 14 Polarization: 35.71 SS G_CDS: 2.03 Total: 37.74 kcal Total: -61.20 6.43 -54.77 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000142051781.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.266 kcal (2) G-P(sol) polarization free energy of solvation -61.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds