Wall clock time and date at job start Mon Mar 30 2020 05:45:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42897 * 109.46954 * 2 1 4 4 C 1.50702 * 109.46957 * 239.99969 * 2 1 3 5 5 H 1.08008 * 119.99965 * 268.02095 * 4 2 1 6 6 C 1.37870 * 120.00065 * 88.01588 * 4 2 1 7 7 N 1.31511 * 120.00324 * 173.49639 * 6 4 2 8 8 Si 1.86806 * 120.00097 * 353.49727 * 6 4 2 9 9 H 1.48502 * 109.46620 * 86.52445 * 8 6 4 10 10 H 1.48494 * 109.47452 * 206.52295 * 8 6 4 11 11 H 1.48501 * 109.46731 * 326.52860 * 8 6 4 12 12 C 1.50700 * 109.47056 * 119.99929 * 2 1 3 13 13 C 1.31822 * 124.30104 * 269.72255 * 12 2 1 14 14 C 1.45390 * 114.89280 * 180.26809 * 13 12 2 15 15 C 1.41178 * 129.33911 * 180.02562 * 14 13 12 16 16 C 1.36090 * 120.45520 * 180.02562 * 15 14 13 17 17 C 1.38854 * 120.59312 * 359.95176 * 16 15 14 18 18 C 1.37462 * 120.18391 * 0.02562 * 17 16 15 19 19 C 1.39736 * 111.83022 * 0.02562 * 14 13 12 20 20 S 1.75306 * 124.29523 * 90.02777 * 12 2 1 21 21 H 1.08997 * 109.47089 * 305.98719 * 1 2 3 22 22 H 1.08997 * 109.47146 * 65.99130 * 1 2 3 23 23 H 1.09009 * 109.47012 * 185.99122 * 1 2 3 24 24 H 0.96706 * 113.99720 * 180.02562 * 3 2 1 25 25 H 0.97003 * 120.00904 * 180.02562 * 7 6 4 26 26 H 1.08001 * 122.54965 * 0.24365 * 13 12 2 27 27 H 1.08002 * 119.76906 * 359.97438 * 15 14 13 28 28 H 1.07999 * 119.70375 * 179.97438 * 16 15 14 29 29 H 1.08001 * 119.90377 * 180.02562 * 17 16 15 30 30 H 1.08002 * 119.90632 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.2428 -1.7692 -1.1947 6 6 2.2231 -0.0089 -2.4019 7 7 2.7807 -0.5973 -3.4374 8 14 1.6895 1.7776 -2.5183 9 1 2.7807 2.6534 -2.0208 10 1 1.3912 2.1139 -3.9335 11 1 0.4727 1.9854 -1.6929 12 6 2.0323 -0.7104 1.2305 13 6 2.2849 -0.1166 2.3800 14 6 2.7677 -0.9978 3.4308 15 6 3.1269 -0.6910 4.7613 16 6 3.5620 -1.6692 5.6014 17 6 3.6589 -2.9839 5.1651 18 6 3.3154 -3.3110 3.8749 19 6 2.8667 -2.3215 2.9943 20 16 2.3622 -2.4302 1.3127 21 1 -0.3633 0.6038 0.8315 22 1 -0.3633 0.4181 -0.9387 23 1 -0.3633 -1.0221 0.1073 24 1 2.9703 1.4236 -0.0004 25 1 2.9154 -0.1037 -4.2616 26 1 2.1443 0.9437 2.5296 27 1 3.0566 0.3272 5.1145 28 1 3.8339 -1.4209 6.6166 29 1 4.0052 -3.7515 5.8413 30 1 3.3922 -4.3351 3.5404 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000166229079.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:06 Heat of formation + Delta-G solvation = -10.207844 kcal Electronic energy + Delta-G solvation = -15475.808726 eV Core-core repulsion = 12941.168664 eV Total energy + Delta-G solvation = -2534.640062 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.19440 -37.49947 -34.26793 -32.41711 -30.80019 -30.68927 -28.16195 -25.40290 -23.37281 -22.70104 -20.84846 -19.38501 -17.58633 -17.36227 -15.80273 -15.30151 -15.10850 -14.67929 -13.99959 -13.73652 -13.36275 -13.20558 -12.85205 -12.41339 -12.21136 -11.72139 -11.66227 -11.40884 -11.13640 -10.82606 -10.58035 -10.31283 -10.26649 -10.10477 -9.37412 -9.19332 -8.69893 -8.61119 -7.96491 -7.24650 -6.22389 -4.36072 1.13047 1.48467 2.07603 2.66612 2.76703 3.42851 3.51119 3.68396 3.98439 4.46259 4.89822 5.04670 5.07274 5.11945 5.32012 5.51162 5.53663 5.74956 5.99817 6.14937 6.20981 6.35983 6.43876 6.48516 6.60202 6.70030 6.73641 6.91764 7.09204 7.14109 7.42420 8.06000 8.54743 8.75466 9.36582 10.86183 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.040772 B = 0.007066 C = 0.006509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.578763 B = 3961.469349 C = 4300.531079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.278 3.722 3 O -0.557 6.557 4 C -0.563 4.563 5 H 0.085 0.915 6 C 0.076 3.924 7 N -0.884 5.884 8 Si 0.947 3.053 9 H -0.293 1.293 10 H -0.325 1.325 11 H -0.266 1.266 12 C -0.123 4.123 13 C -0.159 4.159 14 C -0.064 4.064 15 C -0.087 4.087 16 C -0.127 4.127 17 C -0.122 4.122 18 C -0.081 4.081 19 C -0.166 4.166 20 S 0.129 5.871 21 H 0.036 0.964 22 H 0.064 0.936 23 H 0.059 0.941 24 H 0.372 0.628 25 H 0.268 0.732 26 H 0.142 0.858 27 H 0.120 0.880 28 H 0.120 0.880 29 H 0.122 0.878 30 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.238 -1.678 14.228 14.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.237 3.763 3 O -0.365 6.365 4 C -0.601 4.601 5 H 0.103 0.897 6 C -0.129 4.129 7 N -0.518 5.518 8 Si 0.782 3.218 9 H -0.220 1.220 10 H -0.257 1.257 11 H -0.192 1.192 12 C -0.240 4.240 13 C -0.187 4.187 14 C -0.073 4.073 15 C -0.107 4.107 16 C -0.148 4.148 17 C -0.143 4.143 18 C -0.103 4.103 19 C -0.282 4.282 20 S 0.395 5.605 21 H 0.055 0.945 22 H 0.083 0.917 23 H 0.078 0.922 24 H 0.221 0.779 25 H 0.077 0.923 26 H 0.159 0.841 27 H 0.138 0.862 28 H 0.138 0.862 29 H 0.140 0.860 30 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -0.482 -2.716 12.930 13.221 hybrid contribution 0.629 1.844 0.838 2.121 sum 0.147 -0.871 13.769 13.797 Atomic orbital electron populations 1.21912 0.94281 1.00787 1.01134 1.17918 0.91683 0.78445 0.88231 1.86180 1.26766 1.29202 1.94367 1.21327 1.47683 0.97471 0.93600 0.89709 1.25087 0.92883 1.00044 0.94919 1.69957 1.40273 1.38161 1.03456 0.85726 0.80223 0.82662 0.73173 1.22043 1.25697 1.19157 1.25328 1.01601 0.96981 1.00051 1.20723 1.06164 1.00452 0.91399 1.19371 1.01177 0.92069 0.94679 1.20658 0.98908 0.99336 0.91784 1.20563 1.01552 0.93170 0.99509 1.20902 1.01430 0.96527 0.95393 1.20431 0.99361 0.97671 0.92851 1.23215 1.07258 0.97268 1.00435 1.84434 1.67756 1.06547 1.01731 0.94520 0.91674 0.92156 0.77934 0.92301 0.84065 0.86218 0.86218 0.85979 0.86095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.61 8.44 37.16 0.31 -2.30 16 2 C 0.28 6.29 0.88 -92.92 -0.08 6.21 16 3 O -0.56 -12.23 7.86 -35.23 -0.28 -12.51 16 4 C -0.56 -14.94 8.49 -34.44 -0.29 -15.23 16 5 H 0.09 2.42 6.81 -52.48 -0.36 2.06 16 6 C 0.08 2.11 5.46 -17.82 -0.10 2.01 16 7 N -0.88 -26.07 13.96 55.43 0.77 -25.30 16 8 Si 0.95 23.21 24.12 -169.99 -4.10 19.11 16 9 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 10 H -0.33 -8.19 7.11 56.52 0.40 -7.79 16 11 H -0.27 -6.40 5.50 56.52 0.31 -6.08 16 12 C -0.12 -2.52 5.15 -36.20 -0.19 -2.71 16 13 C -0.16 -2.93 9.79 -38.63 -0.38 -3.31 16 14 C -0.06 -1.10 6.04 -105.38 -0.64 -1.74 16 15 C -0.09 -1.24 10.05 -39.24 -0.39 -1.63 16 16 C -0.13 -1.58 9.95 -40.13 -0.40 -1.97 16 17 C -0.12 -1.51 10.03 -39.64 -0.40 -1.91 16 18 C -0.08 -1.17 10.07 -39.26 -0.40 -1.57 16 19 C -0.17 -2.90 6.48 -38.42 -0.25 -3.15 16 20 S 0.13 2.50 21.56 -107.50 -2.32 0.18 16 21 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 22 H 0.06 1.44 6.03 -51.93 -0.31 1.12 16 23 H 0.06 1.20 8.14 -51.92 -0.42 0.78 16 24 H 0.37 7.53 8.68 45.56 0.40 7.92 16 25 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 26 H 0.14 2.43 7.82 -52.49 -0.41 2.02 16 27 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 28 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 29 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 30 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 LS Contribution 264.19 15.07 3.98 3.98 Total: -1.00 -29.92 264.19 -7.58 -37.51 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -2.45 Total: 4.33 kcal Atomic # 6 Polarization: -24.11 SS G_CDS: -3.19 Total: -27.31 kcal Atomic # 7 Polarization: -26.07 SS G_CDS: 0.77 Total: -25.30 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: -0.28 Total: -12.51 kcal Atomic # 14 Polarization: 23.21 SS G_CDS: -4.10 Total: 19.11 kcal Atomic # 16 Polarization: 2.50 SS G_CDS: -2.32 Total: 0.18 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -29.92 -7.58 -37.51 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166229079.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.297 kcal (2) G-P(sol) polarization free energy of solvation -29.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds