Wall clock time and date at job start Mon Mar 30 2020 06:18:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46960 * 2 1 4 4 N 1.46496 * 109.47194 * 120.00113 * 2 1 3 5 5 C 1.34508 * 125.67328 * 275.27696 * 4 2 1 6 6 C 1.39278 * 107.18535 * 180.11514 * 5 4 2 7 7 C 1.41595 * 126.55608 * 179.89215 * 6 5 4 8 8 H 1.08009 * 120.00125 * 179.40808 * 7 6 5 9 9 C 1.39692 * 120.00234 * 359.68536 * 7 6 5 10 10 N 1.31030 * 119.99937 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00325 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47112 * 90.00193 * 11 9 7 13 13 H 1.48499 * 109.47134 * 210.00304 * 11 9 7 14 14 H 1.48498 * 109.47011 * 329.99926 * 11 9 7 15 15 C 1.41884 * 106.88716 * 359.63097 * 6 5 4 16 16 C 1.50704 * 125.97812 * 180.26511 * 15 6 5 17 17 F 1.39896 * 109.46976 * 89.99553 * 16 15 6 18 18 F 1.39894 * 109.46839 * 209.99848 * 16 15 6 19 19 F 1.39899 * 109.46861 * 329.99661 * 16 15 6 20 20 N 1.30318 * 108.04679 * 0.22639 * 15 6 5 21 21 H 1.09002 * 109.47009 * 60.00192 * 1 2 3 22 22 H 1.08993 * 109.47003 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.46683 * 300.00181 * 1 2 3 24 24 H 1.09005 * 109.47134 * 239.99997 * 2 1 3 25 25 H 1.09005 * 109.46715 * 180.02562 * 3 2 1 26 26 H 1.09002 * 109.47103 * 299.99750 * 3 2 1 27 27 H 1.08994 * 109.47616 * 60.00012 * 3 2 1 28 28 H 1.08000 * 126.40869 * 0.02562 * 5 4 2 29 29 H 0.96996 * 119.99923 * 179.97438 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1851 -0.1349 2.4096 6 6 2.6662 -1.1310 3.2558 7 6 2.9856 -0.9902 4.6281 8 1 3.3442 -1.8406 5.1892 9 6 2.8315 0.2473 5.2577 10 7 2.3909 1.2775 4.5785 11 14 3.2536 0.4333 7.0679 12 1 4.6806 0.8200 7.2062 13 1 2.3951 1.4843 7.6708 14 1 3.0204 -0.8567 7.7656 15 6 2.7693 -2.3154 2.4814 16 6 3.2417 -3.6583 2.9760 17 9 2.1486 -4.3914 3.4501 18 9 3.8500 -4.3543 1.9260 19 9 4.1649 -3.4756 4.0111 20 7 2.3832 -2.0391 1.2678 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.8934 -0.5139 -0.8900 25 1 3.1301 1.4425 -0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6767 1.9564 0.8899 28 1 1.9849 0.8921 2.6774 29 1 2.2836 2.1367 5.0158 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000205592132.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:29 Heat of formation + Delta-G solvation = -107.231406 kcal Electronic energy + Delta-G solvation = -18623.454903 eV Core-core repulsion = 15132.290724 eV Total energy + Delta-G solvation = -3491.164179 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.083 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -51.01140 -48.53821 -48.51328 -41.54951 -36.69248 -35.29126 -31.62132 -30.83931 -28.23493 -27.38268 -26.72047 -23.26852 -21.65801 -20.72238 -19.45593 -19.34894 -18.85663 -17.99192 -17.23797 -16.20249 -15.86891 -15.41281 -15.39857 -15.10353 -14.98032 -14.72615 -14.69912 -14.49729 -14.09794 -13.70004 -13.42621 -13.39918 -13.04039 -12.88838 -12.80738 -12.28346 -12.20837 -12.01036 -11.71098 -11.20802 -11.14634 -10.06213 -9.26359 -8.45244 -6.14808 1.05303 1.37660 1.44734 1.50348 1.57603 2.07549 2.09177 2.34065 3.08540 3.27978 3.30845 3.68034 3.78532 4.05074 4.19042 4.57090 4.66745 4.71971 4.85490 4.95594 5.08240 5.25167 5.32367 5.35026 5.53534 5.73811 6.31453 6.70789 6.89671 7.04096 7.16836 8.56394 Molecular weight = 248.08amu Principal moments of inertia in cm(-1) A = 0.015183 B = 0.012141 C = 0.007321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.692952 B = 2305.697055 C = 3823.702760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.145 3.855 3 C -0.150 4.150 4 N -0.343 5.343 5 C -0.046 4.046 6 C -0.036 4.036 7 C -0.465 4.465 8 H 0.073 0.927 9 C 0.024 3.976 10 N -0.855 5.855 11 Si 0.983 3.017 12 H -0.268 1.268 13 H -0.268 1.268 14 H -0.267 1.267 15 C -0.124 4.124 16 C 0.568 3.432 17 F -0.182 7.182 18 F -0.179 7.179 19 F -0.169 7.169 20 N -0.302 5.302 21 H 0.110 0.890 22 H 0.046 0.954 23 H 0.051 0.949 24 H 0.102 0.898 25 H 0.050 0.950 26 H 0.113 0.887 27 H 0.058 0.942 28 H 0.201 0.799 29 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.849 1.218 -5.399 5.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.044 3.956 3 C -0.208 4.208 4 N -0.131 5.131 5 C -0.192 4.192 6 C -0.046 4.046 7 C -0.498 4.498 8 H 0.091 0.909 9 C -0.184 4.184 10 N -0.486 5.486 11 Si 0.806 3.194 12 H -0.193 1.193 13 H -0.192 1.192 14 H -0.192 1.192 15 C -0.284 4.284 16 C 0.512 3.488 17 F -0.163 7.163 18 F -0.161 7.161 19 F -0.150 7.150 20 N -0.132 5.132 21 H 0.128 0.872 22 H 0.065 0.935 23 H 0.070 0.930 24 H 0.120 0.880 25 H 0.069 0.931 26 H 0.131 0.869 27 H 0.077 0.923 28 H 0.217 0.783 29 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.101 1.010 -6.575 6.976 hybrid contribution 0.411 0.048 1.703 1.753 sum -1.690 1.058 -4.872 5.264 Atomic orbital electron populations 1.22170 0.92802 1.02261 1.03883 1.21560 0.95687 0.93549 0.84767 1.22091 1.01319 0.93009 1.04403 1.48622 1.49328 1.05234 1.09910 1.23926 1.10453 1.01433 0.83384 1.18202 1.02011 0.89011 0.95353 1.19196 1.40305 0.96934 0.93403 0.90890 1.26361 0.93353 0.94525 1.04178 1.69422 1.38712 1.01874 1.38642 0.85154 0.78789 0.78597 0.76895 1.19266 1.19245 1.19170 1.21989 1.15918 0.94942 0.95598 1.16767 0.74661 0.82701 0.74658 1.93145 1.55041 1.79228 1.88920 1.93129 1.83859 1.81232 1.57872 1.93148 1.66958 1.95329 1.59592 1.76229 1.21619 0.96616 1.18721 0.87152 0.93512 0.93014 0.87999 0.93074 0.86857 0.92291 0.78301 0.90647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.12 9.52 71.98 0.69 -3.43 15 2 C 0.14 4.58 3.91 44.99 0.18 4.75 15 3 C -0.15 -3.98 8.83 71.98 0.64 -3.35 15 4 N -0.34 -15.17 3.50 -324.48 -1.13 -16.31 15 5 C -0.05 -2.28 9.55 84.53 0.81 -1.48 15 6 C -0.04 -1.96 5.91 -21.30 -0.13 -2.09 15 7 C -0.46 -25.59 8.84 23.45 0.21 -25.39 15 8 H 0.07 3.98 6.20 -2.91 -0.02 3.97 15 9 C 0.02 1.23 5.49 85.16 0.47 1.70 15 10 N -0.86 -43.00 10.33 21.79 0.23 -42.78 15 11 Si 0.98 39.71 29.56 68.60 2.03 41.74 15 12 H -0.27 -10.52 7.11 99.48 0.71 -9.81 15 13 H -0.27 -10.17 7.11 99.48 0.71 -9.47 15 14 H -0.27 -10.82 7.11 99.48 0.71 -10.12 15 15 C -0.12 -6.38 6.62 43.69 0.29 -6.09 15 16 C 0.57 26.34 3.50 71.24 0.25 26.59 15 17 F -0.18 -8.12 17.30 44.97 0.78 -7.35 15 18 F -0.18 -7.72 17.25 44.97 0.78 -6.95 15 19 F -0.17 -7.83 15.05 44.97 0.68 -7.15 15 20 N -0.30 -14.79 12.40 -46.35 -0.57 -15.36 15 21 H 0.11 2.00 8.14 -2.39 -0.02 1.98 15 22 H 0.05 1.38 8.14 -2.39 -0.02 1.36 15 23 H 0.05 1.53 8.14 -2.39 -0.02 1.51 15 24 H 0.10 2.94 8.14 -2.38 -0.02 2.92 15 25 H 0.05 1.48 8.14 -2.38 -0.02 1.46 15 26 H 0.11 2.01 8.14 -2.39 -0.02 1.99 15 27 H 0.06 1.73 7.13 -2.39 -0.02 1.72 15 28 H 0.20 10.00 4.94 -2.91 -0.01 9.98 15 29 H 0.28 12.93 8.30 -92.71 -0.77 12.16 15 Total: -1.00 -60.65 264.28 7.35 -53.30 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: 1.19 Total: 9.63 kcal Atomic # 6 Polarization: -12.17 SS G_CDS: 3.39 Total: -8.78 kcal Atomic # 7 Polarization: -72.96 SS G_CDS: -1.48 Total: -74.45 kcal Atomic # 9 Polarization: -23.67 SS G_CDS: 2.23 Total: -21.44 kcal Atomic # 14 Polarization: 39.71 SS G_CDS: 2.03 Total: 41.74 kcal Total: -60.65 7.35 -53.30 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000205592132.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.936 kcal (2) G-P(sol) polarization free energy of solvation -60.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds