Wall clock time and date at job start Mon Mar 30 2020 06:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 N 1.46500 * 109.47473 * 239.99627 * 2 1 3 5 5 N 1.39880 * 125.67284 * 60.02342 * 4 2 1 6 6 C 1.30318 * 109.23068 * 179.97438 * 5 4 2 7 7 C 1.41885 * 108.04623 * 0.02562 * 6 5 4 8 8 C 1.41597 * 126.55683 * 180.02562 * 7 6 5 9 9 H 1.07997 * 120.00061 * 179.97438 * 8 7 6 10 10 C 1.39700 * 119.99976 * 359.97052 * 8 7 6 11 11 N 1.31028 * 119.99759 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 119.99817 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47142 * 60.00323 * 12 10 8 14 14 H 1.48496 * 109.46790 * 180.02562 * 12 10 8 15 15 H 1.48500 * 109.47277 * 300.00071 * 12 10 8 16 16 C 1.34499 * 125.67683 * 239.71575 * 4 2 1 17 17 C 1.50696 * 126.40656 * 359.97438 * 16 4 2 18 18 F 1.39893 * 109.47478 * 89.99728 * 17 16 4 19 19 F 1.39910 * 109.46935 * 209.99723 * 17 16 4 20 20 F 1.39898 * 109.47134 * 329.99301 * 17 16 4 21 21 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 23 23 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 24 24 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 25 25 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 26 26 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 27 27 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 28 28 H 1.07997 * 125.97457 * 179.97438 * 6 5 4 29 29 H 0.97002 * 119.99347 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6907 -1.1961 5 7 1.7551 -0.3175 -2.5182 6 6 2.3460 -1.1524 -3.3257 7 6 3.0271 -2.1170 -2.5392 8 6 3.7970 -3.2046 -3.0183 9 1 4.2728 -3.8780 -2.3209 10 6 3.9408 -3.4065 -4.3931 11 7 3.3638 -2.5891 -5.2392 12 14 4.9558 -4.8416 -5.0252 13 1 4.3710 -6.1155 -4.5348 14 1 4.9526 -4.8342 -6.5101 15 1 6.3513 -4.7158 -4.5331 16 6 2.7994 -1.7857 -1.2057 17 6 3.3270 -2.5185 0.0008 18 9 2.4165 -3.5111 0.3785 19 9 4.5564 -3.1082 -0.3126 20 9 3.4981 -1.6165 1.0563 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 0.5139 0.8900 24 1 1.8934 -0.5137 0.8900 25 1 1.6767 1.9564 -0.8900 26 1 1.6767 1.9563 0.8899 27 1 3.1300 1.4425 0.0005 28 1 2.3208 -1.1168 -4.4048 29 1 3.4641 -2.7291 -6.1938 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000205596528.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:35 Heat of formation + Delta-G solvation = -90.605049 kcal Electronic energy + Delta-G solvation = -18971.260997 eV Core-core repulsion = 15480.817791 eV Total energy + Delta-G solvation = -3490.443206 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.083 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -49.26970 -46.87819 -46.67650 -39.53865 -35.04923 -33.37806 -30.17090 -29.03195 -26.86796 -25.96263 -23.90726 -21.78977 -19.89619 -19.31919 -17.64862 -17.51136 -17.19824 -16.17009 -15.07561 -14.46241 -14.16189 -13.94617 -13.60955 -13.51507 -13.23432 -13.12591 -12.95271 -12.91162 -12.24648 -12.20953 -11.92821 -11.81934 -11.36664 -11.26810 -11.04445 -10.85540 -10.70649 -10.29059 -10.21494 -9.43793 -9.05121 -8.12424 -7.44979 -6.73999 -4.31266 2.73822 3.09253 3.13461 3.17228 3.45475 3.83053 3.95743 4.15460 4.95503 5.07096 5.17131 5.21124 5.40496 5.54552 5.59253 5.85871 5.92335 6.13021 6.14332 6.43637 6.56109 6.71031 7.01454 7.21234 7.34773 7.87909 8.27726 8.43480 8.70226 8.85313 9.21924 10.22753 Molecular weight = 248.08amu Principal moments of inertia in cm(-1) A = 0.026545 B = 0.009393 C = 0.007598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.567431 B = 2980.168813 C = 3684.322667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.156 3.844 3 C -0.154 4.154 4 N -0.372 5.372 5 N -0.289 5.289 6 C 0.022 3.978 7 C 0.053 3.947 8 C -0.430 4.430 9 H 0.083 0.917 10 C 0.073 3.927 11 N -0.820 5.820 12 Si 0.922 3.078 13 H -0.265 1.265 14 H -0.278 1.278 15 H -0.265 1.265 16 C -0.223 4.223 17 C 0.556 3.444 18 F -0.192 7.192 19 F -0.171 7.171 20 F -0.198 7.198 21 H 0.056 0.944 22 H 0.066 0.934 23 H 0.061 0.939 24 H 0.095 0.905 25 H 0.065 0.935 26 H 0.060 0.940 27 H 0.056 0.944 28 H 0.209 0.791 29 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.287 1.938 6.142 6.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.052 3.948 3 C -0.212 4.212 4 N -0.165 5.165 5 N -0.110 5.110 6 C -0.168 4.168 7 C 0.043 3.957 8 C -0.462 4.462 9 H 0.101 0.899 10 C -0.142 4.142 11 N -0.448 5.448 12 Si 0.747 3.253 13 H -0.190 1.190 14 H -0.203 1.203 15 H -0.190 1.190 16 C -0.341 4.341 17 C 0.501 3.499 18 F -0.174 7.174 19 F -0.152 7.152 20 F -0.180 7.180 21 H 0.075 0.925 22 H 0.085 0.915 23 H 0.080 0.920 24 H 0.112 0.888 25 H 0.084 0.916 26 H 0.079 0.921 27 H 0.075 0.925 28 H 0.225 0.775 29 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.038 2.995 6.142 7.131 hybrid contribution 1.044 -1.477 -0.114 1.812 sum -0.994 1.519 6.028 6.295 Atomic orbital electron populations 1.22119 0.94931 1.02301 1.02113 1.21098 0.94433 0.93540 0.85685 1.22085 1.01558 0.95571 1.02028 1.47064 1.43057 1.22566 1.03764 1.76477 1.23256 1.24327 0.86931 1.25083 0.97758 0.93193 1.00738 1.17934 0.95500 0.95133 0.87153 1.19146 1.26213 1.08970 0.91913 0.89867 1.25828 0.94626 0.97107 0.96673 1.69449 1.36748 1.34650 1.03998 0.86117 0.80505 0.81016 0.77627 1.18988 1.20336 1.18958 1.20010 1.18717 1.02087 0.93287 1.17225 0.75351 0.76403 0.80937 1.93156 1.67726 1.64092 1.92414 1.93138 1.44541 1.84802 1.92755 1.93009 1.95363 1.68171 1.61422 0.92524 0.91541 0.92030 0.88759 0.91602 0.92070 0.92493 0.77511 0.90736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.49 9.44 37.16 0.35 -2.14 15 2 C 0.16 2.84 3.40 -67.93 -0.23 2.61 15 3 C -0.15 -2.46 9.44 37.16 0.35 -2.11 15 4 N -0.37 -8.50 3.25 -49.79 -0.16 -8.67 15 5 N -0.29 -7.05 12.30 30.97 0.38 -6.67 15 6 C 0.02 0.57 10.91 -16.80 -0.18 0.38 15 7 C 0.05 1.42 5.91 -106.83 -0.63 0.79 15 8 C -0.43 -11.34 8.82 -37.76 -0.33 -11.67 15 9 H 0.08 2.16 6.18 -52.49 -0.32 1.83 15 10 C 0.07 1.78 5.49 -17.35 -0.10 1.69 15 11 N -0.82 -20.23 10.33 55.54 0.57 -19.65 15 12 Si 0.92 18.74 29.56 -169.99 -5.02 13.72 15 13 H -0.27 -5.37 7.11 56.52 0.40 -4.97 15 14 H -0.28 -5.46 7.11 56.52 0.40 -5.06 15 15 H -0.26 -5.37 7.11 56.52 0.40 -4.97 15 16 C -0.22 -5.50 6.50 -81.04 -0.53 -6.03 15 17 C 0.56 12.37 3.34 36.00 0.12 12.49 15 18 F -0.19 -4.17 17.30 2.25 0.04 -4.13 15 19 F -0.17 -3.87 15.04 2.25 0.03 -3.83 15 20 F -0.20 -3.95 14.57 2.25 0.03 -3.92 15 21 H 0.06 0.95 8.14 -51.93 -0.42 0.52 15 22 H 0.07 1.10 8.14 -51.93 -0.42 0.68 15 23 H 0.06 0.77 8.14 -51.93 -0.42 0.35 15 24 H 0.09 1.68 5.42 -51.93 -0.28 1.40 15 25 H 0.06 1.09 8.14 -51.93 -0.42 0.67 15 26 H 0.06 0.77 8.14 -51.93 -0.42 0.34 15 27 H 0.06 0.96 8.14 -51.93 -0.42 0.53 15 28 H 0.21 5.34 5.77 -52.49 -0.30 5.04 15 29 H 0.28 6.34 8.30 -40.82 -0.34 6.01 15 LS Contribution 261.45 15.07 3.94 3.94 Total: -1.00 -26.86 261.45 -3.94 -30.80 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: -2.58 Total: 2.39 kcal Atomic # 6 Polarization: -2.80 SS G_CDS: -1.18 Total: -3.97 kcal Atomic # 7 Polarization: -35.78 SS G_CDS: 0.79 Total: -34.99 kcal Atomic # 9 Polarization: -11.99 SS G_CDS: 0.11 Total: -11.88 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -5.02 Total: 13.72 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -26.86 -3.94 -30.80 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000205596528.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.805 kcal (2) G-P(sol) polarization free energy of solvation -26.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds