Wall clock time and date at job start Mon Mar 30 2020 06:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 N 1.46500 * 109.47473 * 239.99627 * 2 1 3 5 5 N 1.39880 * 125.67284 * 60.02342 * 4 2 1 6 6 C 1.30318 * 109.23068 * 179.97438 * 5 4 2 7 7 C 1.41885 * 108.04623 * 0.02562 * 6 5 4 8 8 C 1.41597 * 126.55683 * 180.02562 * 7 6 5 9 9 H 1.07997 * 120.00061 * 179.97438 * 8 7 6 10 10 C 1.39700 * 119.99976 * 359.97052 * 8 7 6 11 11 N 1.31028 * 119.99759 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 119.99817 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47142 * 60.00323 * 12 10 8 14 14 H 1.48496 * 109.46790 * 180.02562 * 12 10 8 15 15 H 1.48500 * 109.47277 * 300.00071 * 12 10 8 16 16 C 1.34499 * 125.67683 * 239.71575 * 4 2 1 17 17 C 1.50696 * 126.40656 * 359.97438 * 16 4 2 18 18 F 1.39893 * 109.47478 * 89.99728 * 17 16 4 19 19 F 1.39910 * 109.46935 * 209.99723 * 17 16 4 20 20 F 1.39898 * 109.47134 * 329.99301 * 17 16 4 21 21 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 23 23 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 24 24 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 25 25 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 26 26 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 27 27 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 28 28 H 1.07997 * 125.97457 * 179.97438 * 6 5 4 29 29 H 0.97002 * 119.99347 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6907 -1.1961 5 7 1.7551 -0.3175 -2.5182 6 6 2.3460 -1.1524 -3.3257 7 6 3.0271 -2.1170 -2.5392 8 6 3.7970 -3.2046 -3.0183 9 1 4.2728 -3.8780 -2.3209 10 6 3.9408 -3.4065 -4.3931 11 7 3.3638 -2.5891 -5.2392 12 14 4.9558 -4.8416 -5.0252 13 1 4.3710 -6.1155 -4.5348 14 1 4.9526 -4.8342 -6.5101 15 1 6.3513 -4.7158 -4.5331 16 6 2.7994 -1.7857 -1.2057 17 6 3.3270 -2.5185 0.0008 18 9 2.4165 -3.5111 0.3785 19 9 4.5564 -3.1082 -0.3126 20 9 3.4981 -1.6165 1.0563 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 0.5139 0.8900 24 1 1.8934 -0.5137 0.8900 25 1 1.6767 1.9564 -0.8900 26 1 1.6767 1.9563 0.8899 27 1 3.1300 1.4425 0.0005 28 1 2.3208 -1.1168 -4.4048 29 1 3.4641 -2.7291 -6.1938 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000205596528.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:35 Heat of formation + Delta-G solvation = -105.284536 kcal Electronic energy + Delta-G solvation = -18971.897548 eV Core-core repulsion = 15480.817791 eV Total energy + Delta-G solvation = -3491.079756 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.083 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -51.03994 -48.61552 -48.47359 -41.39584 -36.63907 -35.15799 -32.04614 -30.83427 -28.14622 -27.79208 -25.77567 -23.43885 -21.75158 -21.10262 -19.42252 -19.30586 -18.93461 -18.01673 -16.76184 -16.21389 -15.78000 -15.57792 -15.34650 -15.19576 -14.96668 -14.81671 -14.69563 -14.67576 -14.05306 -13.73134 -13.40870 -13.25591 -13.08149 -12.87707 -12.65533 -12.39369 -12.26045 -11.96235 -11.84182 -11.23241 -10.95751 -10.00579 -9.34480 -8.56715 -6.25053 0.89742 1.44787 1.51201 1.55786 1.66695 2.10260 2.24397 2.27013 3.12728 3.27371 3.35572 3.67503 3.74859 4.08554 4.17426 4.48509 4.70363 4.83958 4.85728 4.87276 5.07692 5.13639 5.26537 5.37259 5.47694 5.93884 6.39785 6.55537 6.78634 6.94216 7.29304 8.41756 Molecular weight = 248.08amu Principal moments of inertia in cm(-1) A = 0.026545 B = 0.009393 C = 0.007598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.567431 B = 2980.168813 C = 3684.322667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.137 3.863 3 C -0.147 4.147 4 N -0.362 5.362 5 N -0.290 5.290 6 C -0.004 4.004 7 C 0.019 3.981 8 C -0.464 4.464 9 H 0.079 0.921 10 C 0.034 3.966 11 N -0.839 5.839 12 Si 0.989 3.011 13 H -0.263 1.263 14 H -0.265 1.265 15 H -0.263 1.263 16 C -0.231 4.231 17 C 0.564 3.436 18 F -0.188 7.188 19 F -0.174 7.174 20 F -0.182 7.182 21 H 0.043 0.957 22 H 0.056 0.944 23 H 0.104 0.896 24 H 0.102 0.898 25 H 0.055 0.945 26 H 0.103 0.897 27 H 0.043 0.957 28 H 0.202 0.798 29 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.361 2.062 7.180 7.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.035 3.965 3 C -0.205 4.205 4 N -0.155 5.155 5 N -0.113 5.113 6 C -0.191 4.191 7 C 0.009 3.991 8 C -0.497 4.497 9 H 0.097 0.903 10 C -0.179 4.179 11 N -0.468 5.468 12 Si 0.810 3.190 13 H -0.188 1.188 14 H -0.189 1.189 15 H -0.188 1.188 16 C -0.350 4.350 17 C 0.508 3.492 18 F -0.169 7.169 19 F -0.155 7.155 20 F -0.163 7.163 21 H 0.062 0.938 22 H 0.075 0.925 23 H 0.123 0.877 24 H 0.120 0.880 25 H 0.074 0.926 26 H 0.122 0.878 27 H 0.062 0.938 28 H 0.218 0.782 29 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -2.131 3.148 7.191 8.134 hybrid contribution 0.999 -1.419 -0.313 1.764 sum -1.132 1.729 6.879 7.182 Atomic orbital electron populations 1.22074 0.92821 1.02017 1.03756 1.21655 0.96232 0.94633 0.83940 1.22041 1.00714 0.94027 1.03670 1.47582 1.41600 1.21888 1.04475 1.76393 1.23109 1.24074 0.87689 1.24969 0.99273 0.94111 1.00794 1.18306 0.96583 0.95972 0.88285 1.19338 1.27632 1.09640 0.93043 0.90331 1.26638 0.95414 0.99526 0.96281 1.69492 1.37060 1.35667 1.04586 0.85122 0.78670 0.77543 0.77619 1.18779 1.18875 1.18790 1.20406 1.18367 1.02482 0.93791 1.16918 0.75170 0.76421 0.80701 1.93158 1.67598 1.63882 1.92276 1.93132 1.44673 1.84829 1.92859 1.93036 1.95276 1.67591 1.60406 0.93773 0.92529 0.87732 0.88040 0.92571 0.87798 0.93754 0.78204 0.89896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.35 9.44 71.98 0.68 -3.67 15 2 C 0.14 4.70 3.40 44.99 0.15 4.86 15 3 C -0.15 -4.29 9.44 71.98 0.68 -3.61 15 4 N -0.36 -16.40 3.25 -311.43 -1.01 -17.41 15 5 N -0.29 -14.27 12.30 -55.94 -0.69 -14.96 15 6 C 0.00 -0.19 10.91 85.82 0.94 0.75 15 7 C 0.02 1.04 5.91 -21.30 -0.13 0.92 15 8 C -0.46 -24.94 8.82 23.45 0.21 -24.74 15 9 H 0.08 4.14 6.18 -2.91 -0.02 4.13 15 10 C 0.03 1.69 5.49 85.17 0.47 2.16 15 11 N -0.84 -42.00 10.33 21.79 0.22 -41.78 15 12 Si 0.99 38.20 29.56 68.60 2.03 40.23 15 13 H -0.26 -10.01 7.11 99.48 0.71 -9.30 15 14 H -0.26 -9.52 7.11 99.48 0.71 -8.82 15 15 H -0.26 -10.03 7.11 99.48 0.71 -9.32 15 16 C -0.23 -11.37 6.50 42.40 0.28 -11.10 15 17 C 0.56 24.59 3.34 71.23 0.24 24.83 15 18 F -0.19 -7.94 17.30 44.97 0.78 -7.16 15 19 F -0.17 -7.79 15.04 44.97 0.68 -7.11 15 20 F -0.18 -6.92 14.57 44.97 0.66 -6.26 15 21 H 0.04 1.39 8.14 -2.39 -0.02 1.37 15 22 H 0.06 1.77 8.14 -2.39 -0.02 1.75 15 23 H 0.10 2.16 8.14 -2.38 -0.02 2.15 15 24 H 0.10 3.35 5.42 -2.39 -0.01 3.34 15 25 H 0.06 1.76 8.14 -2.39 -0.02 1.74 15 26 H 0.10 2.16 8.14 -2.39 -0.02 2.14 15 27 H 0.04 1.40 8.14 -2.39 -0.02 1.38 15 28 H 0.20 10.73 5.77 -2.91 -0.02 10.71 15 29 H 0.29 13.10 8.30 -92.71 -0.77 12.33 15 Total: -1.00 -57.82 261.45 7.36 -50.47 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: 1.19 Total: 13.60 kcal Atomic # 6 Polarization: -13.12 SS G_CDS: 3.51 Total: -9.60 kcal Atomic # 7 Polarization: -72.67 SS G_CDS: -1.48 Total: -74.15 kcal Atomic # 9 Polarization: -22.64 SS G_CDS: 2.11 Total: -20.53 kcal Atomic # 14 Polarization: 38.20 SS G_CDS: 2.03 Total: 40.23 kcal Total: -57.82 7.36 -50.47 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000205596528.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.819 kcal (2) G-P(sol) polarization free energy of solvation -57.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds