Wall clock time and date at job start Mon Mar 30 2020 06:04:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50695 * 109.47220 * 2 1 4 4 C 1.38757 * 119.77579 * 270.28957 * 3 2 1 5 5 C 1.37624 * 120.52165 * 180.32742 * 4 3 2 6 6 C 1.39834 * 119.76712 * 359.40549 * 5 4 3 7 7 N 1.35676 * 133.37956 * 180.28030 * 6 5 4 8 8 C 1.31073 * 109.63741 * 179.97438 * 7 6 5 9 9 S 1.76200 * 125.09245 * 179.97438 * 8 7 6 10 10 C 1.76206 * 99.99679 * 0.02562 * 9 8 7 11 11 H 1.07995 * 119.99899 * 0.02562 * 10 9 8 12 12 C 1.38742 * 119.99881 * 180.02562 * 10 9 8 13 13 N 1.31573 * 119.99802 * 180.02562 * 12 10 9 14 14 Si 1.86796 * 119.99903 * 359.97438 * 12 10 9 15 15 H 1.48497 * 109.47253 * 90.00410 * 14 12 10 16 16 H 1.48503 * 109.47014 * 210.00373 * 14 12 10 17 17 H 1.48505 * 109.47594 * 330.00408 * 14 12 10 18 18 N 1.36731 * 109.81969 * 359.97438 * 8 7 6 19 19 H 0.97002 * 126.39050 * 179.97438 * 18 8 7 20 20 C 1.38384 * 107.21480 * 0.02562 * 18 8 7 21 21 C 1.37953 * 119.77393 * 90.00216 * 3 2 1 22 22 H 1.08999 * 109.46999 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46561 * 300.00299 * 1 2 3 24 24 H 1.09002 * 109.47016 * 59.99443 * 1 2 3 25 25 H 1.08999 * 109.47291 * 239.99799 * 2 1 3 26 26 H 1.09003 * 109.47166 * 120.00025 * 2 1 3 27 27 H 1.08001 * 119.73933 * 0.03030 * 4 3 2 28 28 H 1.08002 * 120.11957 * 179.68617 * 5 4 3 29 29 H 0.97005 * 119.99851 * 179.97438 * 13 12 10 30 30 H 1.08002 * 120.06869 * 359.95708 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2563 2.0724 -1.2044 5 6 2.7214 3.3676 -1.2223 6 6 2.9585 4.0369 -0.0177 7 7 3.4001 5.2837 0.2844 8 6 3.4512 5.4296 1.5860 9 16 3.9696 6.8915 2.4219 10 6 4.3349 7.9211 1.0394 11 1 4.2012 7.5451 0.0358 12 6 4.7942 9.2148 1.2401 13 7 5.0665 9.9838 0.2077 14 14 5.0247 9.8653 2.9759 15 1 6.4052 9.5693 3.4362 16 1 4.8032 11.3336 2.9877 17 1 4.0491 9.2102 3.8838 18 7 3.0421 4.2774 2.1981 19 1 2.9867 4.1219 3.1539 20 6 2.7227 3.3743 1.1994 21 6 2.2608 2.0666 1.1974 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3632 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 1.8934 -0.5139 -0.8899 26 1 1.8934 -0.5138 0.8900 27 1 2.0688 1.5576 -2.1351 28 1 2.8982 3.8669 -2.1635 29 1 5.3873 10.8884 0.3480 30 1 2.0793 1.5553 2.1313 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000212967530.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:18 Heat of formation + Delta-G solvation = 29.290812 kcal Electronic energy + Delta-G solvation = -14767.296165 eV Core-core repulsion = 12266.661645 eV Total energy + Delta-G solvation = -2500.634520 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.068 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.80575 -38.73175 -34.80025 -34.48816 -33.57784 -30.84677 -29.37911 -27.94935 -25.00596 -23.87736 -22.67004 -21.85601 -20.16802 -18.84130 -17.78555 -17.22669 -16.88620 -16.27973 -15.85153 -15.19921 -14.94511 -14.83567 -14.33452 -14.10407 -13.62158 -13.33680 -13.15044 -13.06800 -12.57838 -12.32350 -11.99645 -11.91566 -11.77020 -11.68305 -11.29196 -11.18284 -10.77924 -9.98198 -9.21015 -8.61822 -8.53903 -6.35191 -0.05103 0.47636 0.58138 1.30901 1.35030 1.44624 1.73115 2.01505 2.19249 2.54143 2.82881 2.90457 3.54294 3.92610 4.03715 4.22672 4.40262 4.46407 4.58172 4.63730 4.66273 4.97898 5.11272 5.14833 5.18942 5.43310 5.48562 5.61928 5.71007 5.72647 6.00867 6.32109 6.37239 6.81899 6.93370 8.59975 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.056117 B = 0.004966 C = 0.004640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.835858 B = 5636.771805 C = 6033.640921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.073 4.073 3 C -0.071 4.071 4 C -0.113 4.113 5 C -0.095 4.095 6 C 0.011 3.989 7 N -0.540 5.540 8 C 0.260 3.740 9 S 0.080 5.920 10 C -0.551 4.551 11 H 0.071 0.929 12 C 0.045 3.955 13 N -0.912 5.912 14 Si 0.914 3.086 15 H -0.251 1.251 16 H -0.253 1.253 17 H -0.217 1.217 18 N -0.581 5.581 19 H 0.437 0.563 20 C 0.040 3.960 21 C -0.107 4.107 22 H 0.074 0.926 23 H 0.048 0.952 24 H 0.051 0.949 25 H 0.088 0.912 26 H 0.084 0.916 27 H 0.157 0.843 28 H 0.120 0.880 29 H 0.281 0.719 30 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.274 -18.914 5.393 20.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.110 4.110 3 C -0.074 4.074 4 C -0.133 4.133 5 C -0.115 4.115 6 C -0.110 4.110 7 N -0.266 5.266 8 C -0.113 4.113 9 S 0.313 5.687 10 C -0.699 4.699 11 H 0.089 0.911 12 C -0.161 4.161 13 N -0.548 5.548 14 Si 0.733 3.267 15 H -0.175 1.175 16 H -0.177 1.177 17 H -0.141 1.141 18 N -0.198 5.198 19 H 0.279 0.721 20 C -0.072 4.072 21 C -0.128 4.128 22 H 0.093 0.907 23 H 0.067 0.933 24 H 0.070 0.930 25 H 0.107 0.893 26 H 0.103 0.897 27 H 0.175 0.825 28 H 0.138 0.862 29 H 0.091 0.909 30 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -6.888 -17.805 5.853 19.968 hybrid contribution 0.127 0.320 -0.370 0.506 sum -6.761 -17.485 5.482 19.532 Atomic orbital electron populations 1.21760 0.94276 1.02497 1.01819 1.20537 0.96306 0.89886 1.04300 1.19976 0.98558 0.97583 0.91259 1.21045 1.00084 0.92839 0.99342 1.20474 1.00922 0.95402 0.94750 1.19810 1.04593 0.91168 0.95388 1.70996 1.24645 1.18858 1.12074 1.25890 1.00288 0.93614 0.91518 1.82101 1.78239 0.99165 1.09188 1.22584 1.52234 1.01015 0.94117 0.91125 1.25751 0.92636 0.95200 1.02513 1.70013 1.42566 1.09311 1.32907 0.85944 0.81625 0.80506 0.78651 1.17532 1.17685 1.14068 1.42842 1.57594 1.09973 1.09421 0.72125 1.19248 1.05586 0.94117 0.88262 1.20063 1.03017 0.89604 1.00134 0.90670 0.93274 0.93001 0.89330 0.89713 0.82528 0.86193 0.90909 0.83265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.89 71.98 0.71 -1.21 16 2 C -0.07 -1.04 6.05 29.85 0.18 -0.86 16 3 C -0.07 -1.61 5.14 -19.81 -0.10 -1.71 16 4 C -0.11 -2.89 9.66 22.25 0.21 -2.68 16 5 C -0.09 -3.34 10.10 22.51 0.23 -3.11 16 6 C 0.01 0.47 7.22 39.50 0.29 0.75 16 7 N -0.54 -27.98 9.96 -188.29 -1.88 -29.86 16 8 C 0.26 12.06 8.19 179.55 1.47 13.53 16 9 S 0.08 3.76 19.86 -56.49 -1.12 2.64 16 10 C -0.55 -33.02 9.89 67.94 0.67 -32.35 16 11 H 0.07 4.88 7.08 -2.91 -0.02 4.86 16 12 C 0.05 2.61 5.50 84.85 0.47 3.08 16 13 N -0.91 -55.89 13.96 21.63 0.30 -55.59 16 14 Si 0.91 40.26 27.73 68.60 1.90 42.16 16 15 H -0.25 -10.59 7.11 99.48 0.71 -9.88 16 16 H -0.25 -10.58 7.11 99.48 0.71 -9.87 16 17 H -0.22 -8.72 6.74 99.48 0.67 -8.05 16 18 N -0.58 -20.71 6.28 -187.27 -1.18 -21.89 16 19 H 0.44 11.60 8.96 -92.71 -0.83 10.77 16 20 C 0.04 1.40 7.29 38.78 0.28 1.69 16 21 C -0.11 -2.77 9.70 22.31 0.22 -2.55 16 22 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 23 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 24 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 25 H 0.09 1.02 8.08 -2.39 -0.02 1.00 16 26 H 0.08 0.99 8.08 -2.39 -0.02 0.97 16 27 H 0.16 2.87 8.06 -2.91 -0.02 2.85 16 28 H 0.12 4.17 8.06 -2.91 -0.02 4.15 16 29 H 0.28 15.65 8.31 -92.70 -0.77 14.88 16 30 H 0.15 2.82 8.06 -2.91 -0.02 2.80 16 Total: -1.00 -74.33 276.52 2.95 -71.38 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: 0.29 Total: 16.57 kcal Atomic # 6 Polarization: -30.05 SS G_CDS: 4.63 Total: -25.42 kcal Atomic # 7 Polarization: -104.59 SS G_CDS: -2.75 Total: -107.34 kcal Atomic # 14 Polarization: 40.26 SS G_CDS: 1.90 Total: 42.16 kcal Atomic # 16 Polarization: 3.76 SS G_CDS: -1.12 Total: 2.64 kcal Total: -74.33 2.95 -71.38 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000212967530.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.669 kcal (2) G-P(sol) polarization free energy of solvation -74.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds