Wall clock time and date at job start Mon Mar 30 2020 06:21:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30825 * 1
3 3 Si 1.86800 * 120.00421 * 2 1
4 4 H 1.48505 * 109.46844 * 269.99838 * 3 2 1
5 5 H 1.48494 * 109.47020 * 29.99470 * 3 2 1
6 6 H 1.48497 * 109.47357 * 150.00317 * 3 2 1
7 7 C 1.39946 * 119.99851 * 179.97438 * 2 1 3
8 8 H 1.07998 * 120.00579 * 197.86108 * 7 2 1
9 9 C 1.41398 * 120.00112 * 17.86246 * 7 2 1
10 10 C 1.40740 * 120.24140 * 24.36158 * 9 7 2
11 11 C 1.37595 * 119.74107 * 180.02562 * 10 9 7
12 12 C 1.38659 * 120.25094 * 359.72345 * 11 10 9
13 13 C 1.38610 * 120.49805 * 0.55459 * 12 11 10
14 14 C 1.50699 * 119.87080 * 179.71888 * 13 12 11
15 15 C 1.52579 * 109.22961 * 299.72975 * 14 13 12
16 16 C 1.53103 * 109.87711 * 190.95247 * 15 14 13
17 17 S 1.81754 * 108.83560 * 297.02017 * 16 15 14
18 18 C 1.81747 * 102.21927 * 53.26854 * 17 16 15
19 19 C 1.52410 * 109.08454 * 60.99376 * 14 13 12
20 20 C 1.37633 * 120.25057 * 359.44643 * 13 12 11
21 21 H 0.96999 * 119.99302 * 0.02562 * 1 2 3
22 22 H 1.07996 * 120.12818 * 0.04606 * 10 9 7
23 23 H 1.07999 * 119.87386 * 180.02562 * 11 10 9
24 24 H 1.08000 * 119.75051 * 180.29445 * 12 11 10
25 25 H 1.08999 * 109.18908 * 180.34549 * 14 13 12
26 26 H 1.08990 * 109.39528 * 70.84785 * 15 14 13
27 27 H 1.09006 * 109.38866 * 311.04197 * 15 14 13
28 28 H 1.08996 * 109.57644 * 56.82774 * 16 15 14
29 29 H 1.08999 * 109.57515 * 177.22048 * 16 15 14
30 30 H 1.09000 * 109.57486 * 66.54141 * 18 17 16
31 31 H 1.09000 * 109.57137 * 186.92680 * 18 17 16
32 32 H 1.08999 * 109.42165 * 48.81531 * 19 14 13
33 33 H 1.08999 * 109.33552 * 289.03012 * 19 14 13
34 34 H 1.07998 * 120.12595 * 180.25038 * 20 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3083 0.0000 0.0000
3 14 2.2424 1.6177 0.0000
4 1 2.4899 2.0463 -1.4001
5 1 1.4398 2.6526 0.6999
6 1 3.5399 1.4400 0.6999
7 6 2.0080 -1.2120 0.0005
8 1 3.0489 -1.2345 0.2874
9 6 1.3521 -2.4072 -0.3745
10 6 0.2204 -2.3626 -1.2101
11 6 -0.4102 -3.5319 -1.5682
12 6 0.0687 -4.7513 -1.1138
13 6 1.1789 -4.8067 -0.2859
14 6 1.6835 -6.1392 0.2048
15 6 0.5861 -6.8257 1.0124
16 6 1.1608 -8.0427 1.7424
17 16 1.7488 -9.2423 0.5101
18 6 2.8531 -8.2285 -0.5174
19 6 2.0879 -6.9907 -0.9929
20 6 1.8256 -3.6498 0.0852
21 1 -0.4849 0.8401 -0.0004
22 1 -0.1513 -1.4142 -1.5690
23 1 -1.2785 -3.5002 -2.2096
24 1 -0.4297 -5.6644 -1.4038
25 1 2.5527 -5.9802 0.8430
26 1 -0.2092 -7.1488 0.3408
27 1 0.1810 -6.1243 1.7419
28 1 1.9924 -7.7305 2.3740
29 1 0.3850 -8.5002 2.3562
30 1 3.7177 -7.9200 0.0702
31 1 3.1830 -8.8075 -1.3800
32 1 2.7241 -6.4045 -1.6560
33 1 1.1936 -7.3029 -1.5321
34 1 2.6929 -3.6956 0.7271
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000215940964.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:21:26
Heat of formation + Delta-G solvation = -9.149918 kcal
Electronic energy + Delta-G solvation = -15553.095484 eV
Core-core repulsion = 13154.334392 eV
Total energy + Delta-G solvation = -2398.761092 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 248.093 amu
Computer time = 0.29 seconds
Orbital eigenvalues (eV)
-38.44619 -36.12643 -33.50406 -31.35465 -29.93759 -29.83704 -25.95031 -25.11990
-22.82205 -21.45756 -20.57579 -19.42153 -17.06278 -16.60151 -15.42823 -14.84299
-14.46508 -14.30704 -13.84130 -13.53811 -13.24043 -12.94131 -12.71426 -12.60352
-12.29323 -11.62553 -11.48114 -11.30555 -11.09450 -10.99235 -10.77899 -10.48147
-10.33956 -10.09415 -9.80753 -9.39503 -9.32251 -9.15482 -7.61238 -7.48273
-7.27668 -6.77038 -4.37278 1.88675 2.61945 2.77302 2.95895 3.05953
3.09210 3.21188 3.91926 4.58597 4.85993 4.98410 5.07753 5.17430
5.41931 5.44246 5.61324 5.70408 5.85070 5.88738 6.12477 6.16452
6.21794 6.34193 6.48379 6.52705 6.61560 6.92104 7.05152 7.24287
7.37783 7.58083 7.89803 8.03542 8.09861 8.27727 8.62869 8.88485
8.96614 10.17930
Molecular weight = 248.09amu
Principal moments of inertia in cm(-1)
A = 0.044693 B = 0.004923 C = 0.004774
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 626.352484 B = 5685.901766 C = 5863.353268
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.795 5.795
2 C 0.077 3.923
3 Si 0.907 3.093
4 H -0.268 1.268
5 H -0.278 1.278
6 H -0.263 1.263
7 C -0.466 4.466
8 H 0.076 0.924
9 C 0.110 3.890
10 C -0.165 4.165
11 C -0.106 4.106
12 C -0.231 4.231
13 C -0.058 4.058
14 C -0.046 4.046
15 C -0.110 4.110
16 C -0.075 4.075
17 S -0.289 6.289
18 C -0.075 4.075
19 C -0.109 4.109
20 C -0.218 4.218
21 H 0.280 0.720
22 H 0.116 0.884
23 H 0.086 0.914
24 H 0.085 0.915
25 H 0.066 0.934
26 H 0.074 0.926
27 H 0.076 0.924
28 H 0.081 0.919
29 H 0.099 0.901
30 H 0.080 0.920
31 H 0.099 0.901
32 H 0.075 0.925
33 H 0.075 0.925
34 H 0.089 0.911
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.398 -9.442 0.496 9.754
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.420 5.420
2 C -0.141 4.141
3 Si 0.731 3.269
4 H -0.193 1.193
5 H -0.203 1.203
6 H -0.187 1.187
7 C -0.495 4.495
8 H 0.094 0.906
9 C 0.107 3.893
10 C -0.184 4.184
11 C -0.125 4.125
12 C -0.250 4.250
13 C -0.058 4.058
14 C -0.065 4.065
15 C -0.148 4.148
16 C -0.223 4.223
17 S -0.063 6.063
18 C -0.224 4.224
19 C -0.148 4.148
20 C -0.238 4.238
21 H 0.091 0.909
22 H 0.134 0.866
23 H 0.104 0.896
24 H 0.103 0.897
25 H 0.084 0.916
26 H 0.093 0.907
27 H 0.095 0.905
28 H 0.099 0.901
29 H 0.118 0.882
30 H 0.099 0.901
31 H 0.118 0.882
32 H 0.094 0.906
33 H 0.093 0.907
34 H 0.107 0.893
Dipole moment (debyes) X Y Z Total
from point charges 1.952 -10.371 0.429 10.562
hybrid contribution 0.590 2.096 0.198 2.187
sum 2.542 -8.275 0.627 8.679
Atomic orbital electron populations
1.69831 1.07573 1.29131 1.35490 1.25891 0.94695 1.01249 0.92246
0.86337 0.80506 0.80704 0.79313 1.19288 1.20337 1.18656 1.19566
0.98107 0.91299 1.40567 0.90565 1.17586 0.91181 0.91916 0.88568
1.21335 0.99311 0.96803 1.00967 1.20674 0.98551 0.93378 0.99857
1.20141 1.01109 0.95943 1.07836 1.19075 0.96233 0.92272 0.98269
1.19975 0.97322 0.93667 0.95522 1.21752 0.98585 0.95095 0.99405
1.23492 1.03374 0.97545 0.97915 1.86632 1.60541 1.21783 1.37369
1.23486 0.98950 0.98985 1.00932 1.21722 1.00524 0.94164 0.98381
1.20837 1.03592 0.92363 1.06993 0.90929 0.86579 0.89568 0.89652
0.91605 0.90688 0.90537 0.90072 0.88216 0.90086 0.88238 0.90611
0.90683 0.89277
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.79 -20.54 10.95 55.55 0.61 -19.93 16
2 C 0.08 1.92 5.14 -17.34 -0.09 1.83 16
3 Si 0.91 18.61 29.60 -169.99 -5.03 13.58 16
4 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16
5 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16
6 H -0.26 -5.33 7.11 56.52 0.40 -4.92 16
7 C -0.47 -12.31 9.05 -37.74 -0.34 -12.65 16
8 H 0.08 1.94 7.91 -52.49 -0.42 1.53 16
9 C 0.11 2.90 5.58 -106.82 -0.60 2.30 16
10 C -0.16 -4.27 8.70 -38.87 -0.34 -4.60 16
11 C -0.11 -2.47 10.02 -39.66 -0.40 -2.87 16
12 C -0.23 -4.97 8.89 -39.29 -0.35 -5.32 16
13 C -0.06 -1.23 4.66 -104.71 -0.49 -1.71 16
14 C -0.05 -0.77 2.09 -92.29 -0.19 -0.96 16
15 C -0.11 -1.64 4.73 -26.89 -0.13 -1.77 16
16 C -0.08 -0.96 6.45 37.21 0.24 -0.72 16
17 S -0.29 -3.86 22.33 -107.50 -2.40 -6.26 16
18 C -0.08 -0.94 6.45 37.20 0.24 -0.70 16
19 C -0.11 -1.60 4.72 -26.99 -0.13 -1.73 16
20 C -0.22 -5.21 9.41 -38.88 -0.37 -5.58 16
21 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16
22 H 0.12 3.11 6.16 -52.49 -0.32 2.79 16
23 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16
24 H 0.09 1.66 7.42 -52.49 -0.39 1.27 16
25 H 0.07 1.09 7.78 -51.93 -0.40 0.68 16
26 H 0.07 1.15 7.67 -51.93 -0.40 0.75 16
27 H 0.08 1.21 8.09 -51.93 -0.42 0.79 16
28 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16
29 H 0.10 1.13 8.14 -51.93 -0.42 0.70 16
30 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16
31 H 0.10 1.10 8.14 -51.93 -0.42 0.67 16
32 H 0.08 1.14 8.08 -51.93 -0.42 0.73 16
33 H 0.07 1.13 7.69 -51.93 -0.40 0.73 16
34 H 0.09 2.03 7.93 -52.49 -0.42 1.62 16
LS Contribution 287.74 15.07 4.34 4.34
Total: -1.00 -26.63 287.74 -10.25 -36.88
By element:
Atomic # 1 Polarization: 10.69 SS G_CDS: -4.83 Total: 5.86 kcal
Atomic # 6 Polarization: -31.54 SS G_CDS: -2.93 Total: -34.47 kcal
Atomic # 7 Polarization: -20.54 SS G_CDS: 0.61 Total: -19.93 kcal
Atomic # 14 Polarization: 18.61 SS G_CDS: -5.03 Total: 13.58 kcal
Atomic # 16 Polarization: -3.86 SS G_CDS: -2.40 Total: -6.26 kcal
Total LS contribution 4.34 Total: 4.34 kcal
Total: -26.63 -10.25 -36.88 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000215940964.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 27.733 kcal
(2) G-P(sol) polarization free energy of solvation -26.630 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.102 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.252 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.882 kcal
(6) G-S(sol) free energy of system = (1) + (5) -9.150 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.29 seconds