Wall clock time and date at job start Mon Mar 30 2020 06:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86800 * 120.00421 * 2 1 4 4 H 1.48505 * 109.46844 * 269.99838 * 3 2 1 5 5 H 1.48494 * 109.47020 * 29.99470 * 3 2 1 6 6 H 1.48497 * 109.47357 * 150.00317 * 3 2 1 7 7 C 1.39946 * 119.99851 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00579 * 197.86108 * 7 2 1 9 9 C 1.41398 * 120.00112 * 17.86246 * 7 2 1 10 10 C 1.40740 * 120.24140 * 24.36158 * 9 7 2 11 11 C 1.37595 * 119.74107 * 180.02562 * 10 9 7 12 12 C 1.38659 * 120.25094 * 359.72345 * 11 10 9 13 13 C 1.38610 * 120.49805 * 0.55459 * 12 11 10 14 14 C 1.50699 * 119.87080 * 179.71888 * 13 12 11 15 15 C 1.52579 * 109.22961 * 299.72975 * 14 13 12 16 16 C 1.53103 * 109.87711 * 190.95247 * 15 14 13 17 17 S 1.81754 * 108.83560 * 297.02017 * 16 15 14 18 18 C 1.81747 * 102.21927 * 53.26854 * 17 16 15 19 19 C 1.52410 * 109.08454 * 60.99376 * 14 13 12 20 20 C 1.37633 * 120.25057 * 359.44643 * 13 12 11 21 21 H 0.96999 * 119.99302 * 0.02562 * 1 2 3 22 22 H 1.07996 * 120.12818 * 0.04606 * 10 9 7 23 23 H 1.07999 * 119.87386 * 180.02562 * 11 10 9 24 24 H 1.08000 * 119.75051 * 180.29445 * 12 11 10 25 25 H 1.08999 * 109.18908 * 180.34549 * 14 13 12 26 26 H 1.08990 * 109.39528 * 70.84785 * 15 14 13 27 27 H 1.09006 * 109.38866 * 311.04197 * 15 14 13 28 28 H 1.08996 * 109.57644 * 56.82774 * 16 15 14 29 29 H 1.08999 * 109.57515 * 177.22048 * 16 15 14 30 30 H 1.09000 * 109.57486 * 66.54141 * 18 17 16 31 31 H 1.09000 * 109.57137 * 186.92680 * 18 17 16 32 32 H 1.08999 * 109.42165 * 48.81531 * 19 14 13 33 33 H 1.08999 * 109.33552 * 289.03012 * 19 14 13 34 34 H 1.07998 * 120.12595 * 180.25038 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.4899 2.0463 -1.4001 5 1 1.4398 2.6526 0.6999 6 1 3.5399 1.4400 0.6999 7 6 2.0080 -1.2120 0.0005 8 1 3.0489 -1.2345 0.2874 9 6 1.3521 -2.4072 -0.3745 10 6 0.2204 -2.3626 -1.2101 11 6 -0.4102 -3.5319 -1.5682 12 6 0.0687 -4.7513 -1.1138 13 6 1.1789 -4.8067 -0.2859 14 6 1.6835 -6.1392 0.2048 15 6 0.5861 -6.8257 1.0124 16 6 1.1608 -8.0427 1.7424 17 16 1.7488 -9.2423 0.5101 18 6 2.8531 -8.2285 -0.5174 19 6 2.0879 -6.9907 -0.9929 20 6 1.8256 -3.6498 0.0852 21 1 -0.4849 0.8401 -0.0004 22 1 -0.1513 -1.4142 -1.5690 23 1 -1.2785 -3.5002 -2.2096 24 1 -0.4297 -5.6644 -1.4038 25 1 2.5527 -5.9802 0.8430 26 1 -0.2092 -7.1488 0.3408 27 1 0.1810 -6.1243 1.7419 28 1 1.9924 -7.7305 2.3740 29 1 0.3850 -8.5002 2.3562 30 1 3.7177 -7.9200 0.0702 31 1 3.1830 -8.8075 -1.3800 32 1 2.7241 -6.4045 -1.6560 33 1 1.1936 -7.3029 -1.5321 34 1 2.6929 -3.6956 0.7271 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000215940964.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:26 Heat of formation + Delta-G solvation = -9.149918 kcal Electronic energy + Delta-G solvation = -15553.095484 eV Core-core repulsion = 13154.334392 eV Total energy + Delta-G solvation = -2398.761092 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.44619 -36.12643 -33.50406 -31.35465 -29.93759 -29.83704 -25.95031 -25.11990 -22.82205 -21.45756 -20.57579 -19.42153 -17.06278 -16.60151 -15.42823 -14.84299 -14.46508 -14.30704 -13.84130 -13.53811 -13.24043 -12.94131 -12.71426 -12.60352 -12.29323 -11.62553 -11.48114 -11.30555 -11.09450 -10.99235 -10.77899 -10.48147 -10.33956 -10.09415 -9.80753 -9.39503 -9.32251 -9.15482 -7.61238 -7.48273 -7.27668 -6.77038 -4.37278 1.88675 2.61945 2.77302 2.95895 3.05953 3.09210 3.21188 3.91926 4.58597 4.85993 4.98410 5.07753 5.17430 5.41931 5.44246 5.61324 5.70408 5.85070 5.88738 6.12477 6.16452 6.21794 6.34193 6.48379 6.52705 6.61560 6.92104 7.05152 7.24287 7.37783 7.58083 7.89803 8.03542 8.09861 8.27727 8.62869 8.88485 8.96614 10.17930 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.044693 B = 0.004923 C = 0.004774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.352484 B = 5685.901766 C = 5863.353268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.077 3.923 3 Si 0.907 3.093 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.466 4.466 8 H 0.076 0.924 9 C 0.110 3.890 10 C -0.165 4.165 11 C -0.106 4.106 12 C -0.231 4.231 13 C -0.058 4.058 14 C -0.046 4.046 15 C -0.110 4.110 16 C -0.075 4.075 17 S -0.289 6.289 18 C -0.075 4.075 19 C -0.109 4.109 20 C -0.218 4.218 21 H 0.280 0.720 22 H 0.116 0.884 23 H 0.086 0.914 24 H 0.085 0.915 25 H 0.066 0.934 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.099 0.901 30 H 0.080 0.920 31 H 0.099 0.901 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.398 -9.442 0.496 9.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.495 4.495 8 H 0.094 0.906 9 C 0.107 3.893 10 C -0.184 4.184 11 C -0.125 4.125 12 C -0.250 4.250 13 C -0.058 4.058 14 C -0.065 4.065 15 C -0.148 4.148 16 C -0.223 4.223 17 S -0.063 6.063 18 C -0.224 4.224 19 C -0.148 4.148 20 C -0.238 4.238 21 H 0.091 0.909 22 H 0.134 0.866 23 H 0.104 0.896 24 H 0.103 0.897 25 H 0.084 0.916 26 H 0.093 0.907 27 H 0.095 0.905 28 H 0.099 0.901 29 H 0.118 0.882 30 H 0.099 0.901 31 H 0.118 0.882 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 1.952 -10.371 0.429 10.562 hybrid contribution 0.590 2.096 0.198 2.187 sum 2.542 -8.275 0.627 8.679 Atomic orbital electron populations 1.69831 1.07573 1.29131 1.35490 1.25891 0.94695 1.01249 0.92246 0.86337 0.80506 0.80704 0.79313 1.19288 1.20337 1.18656 1.19566 0.98107 0.91299 1.40567 0.90565 1.17586 0.91181 0.91916 0.88568 1.21335 0.99311 0.96803 1.00967 1.20674 0.98551 0.93378 0.99857 1.20141 1.01109 0.95943 1.07836 1.19075 0.96233 0.92272 0.98269 1.19975 0.97322 0.93667 0.95522 1.21752 0.98585 0.95095 0.99405 1.23492 1.03374 0.97545 0.97915 1.86632 1.60541 1.21783 1.37369 1.23486 0.98950 0.98985 1.00932 1.21722 1.00524 0.94164 0.98381 1.20837 1.03592 0.92363 1.06993 0.90929 0.86579 0.89568 0.89652 0.91605 0.90688 0.90537 0.90072 0.88216 0.90086 0.88238 0.90611 0.90683 0.89277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.54 10.95 55.55 0.61 -19.93 16 2 C 0.08 1.92 5.14 -17.34 -0.09 1.83 16 3 Si 0.91 18.61 29.60 -169.99 -5.03 13.58 16 4 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 5 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 6 H -0.26 -5.33 7.11 56.52 0.40 -4.92 16 7 C -0.47 -12.31 9.05 -37.74 -0.34 -12.65 16 8 H 0.08 1.94 7.91 -52.49 -0.42 1.53 16 9 C 0.11 2.90 5.58 -106.82 -0.60 2.30 16 10 C -0.16 -4.27 8.70 -38.87 -0.34 -4.60 16 11 C -0.11 -2.47 10.02 -39.66 -0.40 -2.87 16 12 C -0.23 -4.97 8.89 -39.29 -0.35 -5.32 16 13 C -0.06 -1.23 4.66 -104.71 -0.49 -1.71 16 14 C -0.05 -0.77 2.09 -92.29 -0.19 -0.96 16 15 C -0.11 -1.64 4.73 -26.89 -0.13 -1.77 16 16 C -0.08 -0.96 6.45 37.21 0.24 -0.72 16 17 S -0.29 -3.86 22.33 -107.50 -2.40 -6.26 16 18 C -0.08 -0.94 6.45 37.20 0.24 -0.70 16 19 C -0.11 -1.60 4.72 -26.99 -0.13 -1.73 16 20 C -0.22 -5.21 9.41 -38.88 -0.37 -5.58 16 21 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 22 H 0.12 3.11 6.16 -52.49 -0.32 2.79 16 23 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 24 H 0.09 1.66 7.42 -52.49 -0.39 1.27 16 25 H 0.07 1.09 7.78 -51.93 -0.40 0.68 16 26 H 0.07 1.15 7.67 -51.93 -0.40 0.75 16 27 H 0.08 1.21 8.09 -51.93 -0.42 0.79 16 28 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 29 H 0.10 1.13 8.14 -51.93 -0.42 0.70 16 30 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 31 H 0.10 1.10 8.14 -51.93 -0.42 0.67 16 32 H 0.08 1.14 8.08 -51.93 -0.42 0.73 16 33 H 0.07 1.13 7.69 -51.93 -0.40 0.73 16 34 H 0.09 2.03 7.93 -52.49 -0.42 1.62 16 LS Contribution 287.74 15.07 4.34 4.34 Total: -1.00 -26.63 287.74 -10.25 -36.88 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -4.83 Total: 5.86 kcal Atomic # 6 Polarization: -31.54 SS G_CDS: -2.93 Total: -34.47 kcal Atomic # 7 Polarization: -20.54 SS G_CDS: 0.61 Total: -19.93 kcal Atomic # 14 Polarization: 18.61 SS G_CDS: -5.03 Total: 13.58 kcal Atomic # 16 Polarization: -3.86 SS G_CDS: -2.40 Total: -6.26 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -26.63 -10.25 -36.88 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215940964.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.733 kcal (2) G-P(sol) polarization free energy of solvation -26.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds