Wall clock time and date at job start Mon Mar 30 2020 05:51:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86803 * 119.99776 * 2 1 4 4 H 1.48498 * 109.46946 * 240.00546 * 3 2 1 5 5 H 1.48496 * 109.46933 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46921 * 120.00229 * 3 2 1 7 7 C 1.37874 * 119.99835 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99767 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00270 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 11 11 N 1.46899 * 109.47244 * 60.00252 * 9 7 2 12 12 C 1.50706 * 109.46817 * 180.02562 * 9 7 2 13 13 C 1.31838 * 124.29937 * 100.00285 * 12 9 7 14 14 C 1.45408 * 114.88201 * 179.97438 * 13 12 9 15 15 C 1.41210 * 129.22106 * 179.97438 * 14 13 12 16 16 C 1.37680 * 120.28428 * 179.97438 * 15 14 13 17 17 N 1.39965 * 119.86156 * 179.97438 * 16 15 14 18 18 C 1.39427 * 120.27436 * 359.97438 * 16 15 14 19 19 C 1.37364 * 120.13344 * 0.02562 * 18 16 15 20 20 C 1.39689 * 111.85637 * 0.02562 * 14 13 12 21 21 S 1.75293 * 124.30367 * 279.69807 * 12 9 7 22 22 H 0.96992 * 120.00038 * 359.97438 * 1 2 3 23 23 H 1.00898 * 110.99862 * 296.04809 * 11 9 7 24 24 H 1.00907 * 110.99802 * 59.99905 * 11 9 7 25 25 H 1.08000 * 122.56364 * 0.02562 * 13 12 9 26 26 H 1.08006 * 119.85595 * 359.97438 * 15 14 13 27 27 H 0.97002 * 120.00172 * 179.97438 * 17 16 15 28 28 H 0.97003 * 120.00052 * 0.02562 * 17 16 15 29 29 H 1.08002 * 119.93634 * 180.02562 * 18 16 15 30 30 H 1.08005 * 119.77382 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6248 -2.5571 0.8897 11 7 0.4061 -2.5768 -1.1997 12 6 2.2305 -3.6446 -0.0005 13 6 2.5695 -4.3322 1.0720 14 6 3.5328 -5.3959 0.8376 15 6 4.0986 -6.3066 1.7566 16 6 5.0042 -7.2516 1.3295 17 7 5.5600 -8.1495 2.2481 18 6 5.3698 -7.3178 -0.0144 19 6 4.8282 -6.4390 -0.9205 20 6 3.9085 -5.4706 -0.5057 21 16 3.0579 -4.2369 -1.4279 22 1 -0.4850 0.8400 0.0004 23 1 -0.3012 -1.8573 -1.1908 24 1 0.9639 -2.5252 -2.0390 25 1 2.1623 -4.1220 2.0500 26 1 3.8198 -6.2615 2.7991 27 1 6.1979 -8.8164 1.9493 28 1 5.3067 -8.1055 3.1834 29 1 6.0804 -8.0616 -0.3436 30 1 5.1159 -6.4952 -1.9600 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238601734.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:58 Heat of formation + Delta-G solvation = 33.169497 kcal Electronic energy + Delta-G solvation = -14961.967367 eV Core-core repulsion = 12461.501039 eV Total energy + Delta-G solvation = -2500.466328 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.068 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.17057 -36.19069 -34.59946 -32.80267 -31.17239 -29.42019 -27.85629 -25.90247 -23.33927 -22.46959 -20.95504 -19.41451 -17.26378 -16.68045 -16.55579 -16.13079 -14.97283 -14.54532 -14.28418 -13.55641 -13.43232 -13.32350 -12.93696 -12.87220 -12.03226 -11.79043 -11.45691 -11.19006 -11.00332 -10.89155 -10.68392 -10.17626 -10.05112 -9.74006 -9.59204 -8.71056 -8.58537 -7.63323 -7.25381 -6.75329 -6.15408 -4.32492 1.33271 1.77512 2.29872 2.86730 3.03697 3.22915 3.27487 3.31943 3.92915 4.17654 4.30116 5.02722 5.08364 5.20728 5.51265 5.68501 5.81115 6.14179 6.29801 6.41491 6.43723 6.53288 6.57035 6.86437 7.03500 7.10740 7.50342 7.59418 7.69176 7.81793 7.97804 8.56243 8.83303 9.01777 9.39208 10.82607 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.037172 B = 0.005635 C = 0.005464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.073413 B = 4967.952429 C = 5123.095310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.068 3.932 3 Si 0.901 3.099 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.547 4.547 8 H 0.059 0.941 9 C 0.263 3.737 10 H 0.059 0.941 11 N -0.848 5.848 12 C -0.057 4.057 13 C -0.184 4.184 14 C -0.004 4.004 15 C -0.178 4.178 16 C 0.208 3.792 17 N -0.885 5.885 18 C -0.188 4.188 19 C -0.035 4.035 20 C -0.204 4.204 21 S 0.078 5.922 22 H 0.268 0.732 23 H 0.360 0.640 24 H 0.312 0.688 25 H 0.136 0.864 26 H 0.118 0.882 27 H 0.394 0.606 28 H 0.395 0.605 29 H 0.120 0.880 30 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.492 -12.320 1.102 15.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.135 4.135 3 Si 0.728 3.272 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.587 4.587 8 H 0.077 0.923 9 C 0.151 3.849 10 H 0.077 0.923 11 N -0.378 5.378 12 C -0.174 4.174 13 C -0.214 4.214 14 C -0.014 4.014 15 C -0.204 4.204 16 C 0.103 3.897 17 N -0.426 5.426 18 C -0.212 4.212 19 C -0.058 4.058 20 C -0.320 4.320 21 S 0.341 5.659 22 H 0.078 0.922 23 H 0.176 0.824 24 H 0.122 0.878 25 H 0.154 0.846 26 H 0.136 0.864 27 H 0.221 0.779 28 H 0.223 0.777 29 H 0.138 0.862 30 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 8.004 -12.406 -0.178 14.765 hybrid contribution 1.053 1.302 1.666 2.362 sum 9.057 -11.103 1.488 14.406 Atomic orbital electron populations 1.69726 1.05869 1.27569 1.50003 1.25006 0.94977 0.99393 0.94086 0.86505 0.79539 0.82248 0.78901 1.20050 1.21101 1.20058 1.21756 0.93810 0.90629 1.52496 0.92295 1.17739 0.88100 0.86578 0.92435 0.92292 1.59533 1.18395 1.56265 1.03636 1.24709 0.99466 0.98944 0.94268 1.20635 1.02768 0.98034 0.99916 1.19042 0.95479 0.94981 0.91864 1.20143 1.02637 0.98707 0.98898 1.17370 0.92823 0.90105 0.89415 1.42416 1.52010 1.38561 1.09574 1.20324 1.05811 1.03417 0.91675 1.20143 0.94179 0.92645 0.98802 1.22603 1.06997 1.04725 0.97665 1.83887 1.41628 1.28892 1.11447 0.92229 0.82352 0.87838 0.84593 0.86437 0.77854 0.77720 0.86216 0.86166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.27 11.54 55.43 0.64 -23.63 16 2 C 0.07 1.82 5.38 -17.82 -0.10 1.73 16 3 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 16 4 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.55 -14.68 8.71 -34.44 -0.30 -14.98 16 8 H 0.06 1.61 7.74 -52.48 -0.41 1.21 16 9 C 0.26 6.60 3.11 -70.01 -0.22 6.38 16 10 H 0.06 1.60 8.10 -51.93 -0.42 1.18 16 11 N -0.85 -20.41 9.10 -6.65 -0.06 -20.47 16 12 C -0.06 -1.28 5.28 -36.20 -0.19 -1.47 16 13 C -0.18 -3.83 10.19 -38.63 -0.39 -4.23 16 14 C 0.00 -0.08 6.04 -105.37 -0.64 -0.71 16 15 C -0.18 -2.82 9.93 -38.66 -0.38 -3.20 16 16 C 0.21 2.81 6.73 -83.90 -0.56 2.25 16 17 N -0.88 -8.40 9.10 32.33 0.29 -8.11 16 18 C -0.19 -2.52 9.87 -39.46 -0.39 -2.91 16 19 C -0.03 -0.53 10.05 -39.30 -0.40 -0.93 16 20 C -0.20 -3.75 6.47 -38.44 -0.25 -4.00 16 21 S 0.08 1.55 22.31 -107.50 -2.40 -0.85 16 22 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 23 H 0.36 9.13 7.08 -39.29 -0.28 8.85 16 24 H 0.31 7.26 8.24 -39.29 -0.32 6.93 16 25 H 0.14 2.67 8.06 -52.49 -0.42 2.24 16 26 H 0.12 1.64 8.06 -52.48 -0.42 1.22 16 27 H 0.39 2.84 8.84 -40.82 -0.36 2.48 16 28 H 0.40 3.13 8.83 -40.82 -0.36 2.77 16 29 H 0.12 1.24 8.06 -52.49 -0.42 0.81 16 30 H 0.12 1.55 8.06 -52.48 -0.42 1.12 16 LS Contribution 274.05 15.07 4.13 4.13 Total: -1.00 -28.54 274.05 -9.21 -37.75 By element: Atomic # 1 Polarization: 20.35 SS G_CDS: -2.98 Total: 17.38 kcal Atomic # 6 Polarization: -18.24 SS G_CDS: -3.82 Total: -22.06 kcal Atomic # 7 Polarization: -53.08 SS G_CDS: 0.87 Total: -52.20 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Atomic # 16 Polarization: 1.55 SS G_CDS: -2.40 Total: -0.85 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -28.54 -9.21 -37.75 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238601734.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.920 kcal (2) G-P(sol) polarization free energy of solvation -28.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds