Wall clock time and date at job start Mon Mar 30 2020 05:51:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86803 * 119.99776 * 2 1 4 4 H 1.48498 * 109.46946 * 240.00546 * 3 2 1 5 5 H 1.48496 * 109.46933 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46921 * 120.00229 * 3 2 1 7 7 C 1.37874 * 119.99835 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99767 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00270 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 11 11 N 1.46899 * 109.47244 * 60.00252 * 9 7 2 12 12 C 1.50706 * 109.46817 * 180.02562 * 9 7 2 13 13 C 1.31838 * 124.29937 * 100.00285 * 12 9 7 14 14 C 1.45408 * 114.88201 * 179.97438 * 13 12 9 15 15 C 1.41210 * 129.22106 * 179.97438 * 14 13 12 16 16 C 1.37680 * 120.28428 * 179.97438 * 15 14 13 17 17 N 1.39965 * 119.86156 * 179.97438 * 16 15 14 18 18 C 1.39427 * 120.27436 * 359.97438 * 16 15 14 19 19 C 1.37364 * 120.13344 * 0.02562 * 18 16 15 20 20 C 1.39689 * 111.85637 * 0.02562 * 14 13 12 21 21 S 1.75293 * 124.30367 * 279.69807 * 12 9 7 22 22 H 0.96992 * 120.00038 * 359.97438 * 1 2 3 23 23 H 1.00898 * 110.99862 * 296.04809 * 11 9 7 24 24 H 1.00907 * 110.99802 * 59.99905 * 11 9 7 25 25 H 1.08000 * 122.56364 * 0.02562 * 13 12 9 26 26 H 1.08006 * 119.85595 * 359.97438 * 15 14 13 27 27 H 0.97002 * 120.00172 * 179.97438 * 17 16 15 28 28 H 0.97003 * 120.00052 * 0.02562 * 17 16 15 29 29 H 1.08002 * 119.93634 * 180.02562 * 18 16 15 30 30 H 1.08005 * 119.77382 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6248 -2.5571 0.8897 11 7 0.4061 -2.5768 -1.1997 12 6 2.2305 -3.6446 -0.0005 13 6 2.5695 -4.3322 1.0720 14 6 3.5328 -5.3959 0.8376 15 6 4.0986 -6.3066 1.7566 16 6 5.0042 -7.2516 1.3295 17 7 5.5600 -8.1495 2.2481 18 6 5.3698 -7.3178 -0.0144 19 6 4.8282 -6.4390 -0.9205 20 6 3.9085 -5.4706 -0.5057 21 16 3.0579 -4.2369 -1.4279 22 1 -0.4850 0.8400 0.0004 23 1 -0.3012 -1.8573 -1.1908 24 1 0.9639 -2.5252 -2.0390 25 1 2.1623 -4.1220 2.0500 26 1 3.8198 -6.2615 2.7991 27 1 6.1979 -8.8164 1.9493 28 1 5.3067 -8.1055 3.1834 29 1 6.0804 -8.0616 -0.3436 30 1 5.1159 -6.4952 -1.9600 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238601734.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:58 Heat of formation + Delta-G solvation = 13.707983 kcal Electronic energy + Delta-G solvation = -14962.811281 eV Core-core repulsion = 12461.501039 eV Total energy + Delta-G solvation = -2501.310242 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.068 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.39933 -37.78312 -36.10515 -34.23447 -32.99749 -30.71670 -29.18986 -27.83462 -24.96847 -23.71306 -22.47668 -20.92286 -18.78104 -18.44066 -17.67316 -17.37991 -16.71079 -16.13799 -15.77603 -15.01660 -14.98154 -14.55010 -14.51226 -14.28036 -13.69227 -13.49005 -12.97317 -12.85411 -12.70451 -12.61005 -12.14266 -12.00447 -11.72559 -11.39527 -10.96408 -10.71617 -9.88329 -9.35520 -8.89616 -8.17067 -8.01795 -6.43698 -0.00711 0.56262 0.83615 1.35405 1.37783 1.38385 1.46545 1.57386 2.35393 2.93543 3.00507 3.04110 3.79706 4.02934 4.27167 4.39960 4.55436 4.61808 4.81482 4.93574 5.04720 5.18945 5.30097 5.36297 5.55820 5.58970 5.69618 5.87298 5.98392 6.53807 6.63632 6.80066 7.00697 7.10471 7.31543 8.77813 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.037172 B = 0.005635 C = 0.005464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.073413 B = 4967.952429 C = 5123.095310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.026 3.974 3 Si 0.962 3.038 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.275 1.275 7 C -0.563 4.563 8 H 0.047 0.953 9 C 0.269 3.731 10 H 0.025 0.975 11 N -0.840 5.840 12 C -0.099 4.099 13 C -0.180 4.180 14 C -0.031 4.031 15 C -0.193 4.193 16 C 0.219 3.781 17 N -0.865 5.865 18 C -0.173 4.173 19 C -0.041 4.041 20 C -0.219 4.219 21 S 0.072 5.928 22 H 0.271 0.729 23 H 0.351 0.649 24 H 0.317 0.683 25 H 0.134 0.866 26 H 0.130 0.870 27 H 0.410 0.590 28 H 0.406 0.594 29 H 0.161 0.839 30 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.886 -14.169 1.240 17.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.175 4.175 3 Si 0.787 3.213 4 H -0.197 1.197 5 H -0.202 1.202 6 H -0.200 1.200 7 C -0.603 4.603 8 H 0.065 0.935 9 C 0.157 3.843 10 H 0.042 0.958 11 N -0.369 5.369 12 C -0.216 4.216 13 C -0.210 4.210 14 C -0.040 4.040 15 C -0.219 4.219 16 C 0.112 3.888 17 N -0.407 5.407 18 C -0.197 4.197 19 C -0.064 4.064 20 C -0.336 4.336 21 S 0.335 5.665 22 H 0.080 0.920 23 H 0.166 0.834 24 H 0.127 0.873 25 H 0.151 0.849 26 H 0.148 0.852 27 H 0.240 0.760 28 H 0.235 0.765 29 H 0.179 0.821 30 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 10.422 -14.299 -0.017 17.694 hybrid contribution 0.421 1.654 1.718 2.422 sum 10.844 -12.646 1.701 16.745 Atomic orbital electron populations 1.69820 1.06894 1.28372 1.50146 1.25728 0.95801 1.02326 0.93610 0.85552 0.78405 0.78570 0.78785 1.19655 1.20243 1.20001 1.21914 0.93332 0.91987 1.53024 0.93484 1.17447 0.88083 0.87532 0.91229 0.95754 1.59485 1.18140 1.55599 1.03695 1.24403 1.01071 0.99763 0.96350 1.20868 1.02559 0.98202 0.99378 1.19085 0.96225 0.95649 0.93020 1.20307 1.03439 0.98964 0.99164 1.17488 0.91495 0.89513 0.90340 1.42394 1.51189 1.37466 1.09611 1.20799 1.04997 1.02871 0.91043 1.20507 0.93352 0.91961 1.00595 1.22765 1.08272 1.05383 0.97134 1.83584 1.42149 1.30079 1.10712 0.92011 0.83403 0.87331 0.84855 0.85215 0.75959 0.76514 0.82142 0.83807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.79 11.54 21.45 0.25 -50.54 16 2 C 0.03 1.43 5.38 84.65 0.46 1.88 16 3 Si 0.96 43.30 29.54 68.60 2.03 45.33 16 4 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 5 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 6 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 7 C -0.56 -31.32 8.71 25.60 0.22 -31.09 16 8 H 0.05 2.67 7.74 -2.91 -0.02 2.64 16 9 C 0.27 14.19 3.11 43.42 0.14 14.33 16 10 H 0.02 1.43 8.10 -2.39 -0.02 1.41 16 11 N -0.84 -42.21 9.10 -174.95 -1.59 -43.81 16 12 C -0.10 -4.66 5.28 24.89 0.13 -4.53 16 13 C -0.18 -7.77 10.19 23.32 0.24 -7.53 16 14 C -0.03 -1.16 6.04 -20.35 -0.12 -1.28 16 15 C -0.19 -5.72 9.93 22.87 0.23 -5.49 16 16 C 0.22 5.09 6.73 38.00 0.26 5.35 16 17 N -0.87 -12.40 9.10 -51.61 -0.47 -12.86 16 18 C -0.17 -3.84 9.87 22.35 0.22 -3.62 16 19 C -0.04 -1.14 10.05 22.45 0.23 -0.91 16 20 C -0.22 -7.90 6.47 23.01 0.15 -7.75 16 21 S 0.07 2.90 22.31 -56.49 -1.26 1.64 16 22 H 0.27 14.26 8.31 -92.71 -0.77 13.49 16 23 H 0.35 18.54 7.08 -89.70 -0.63 17.90 16 24 H 0.32 15.30 8.24 -89.69 -0.74 14.56 16 25 H 0.13 5.55 8.06 -2.91 -0.02 5.52 16 26 H 0.13 3.40 8.06 -2.91 -0.02 3.38 16 27 H 0.41 3.69 8.84 -92.71 -0.82 2.87 16 28 H 0.41 4.70 8.83 -92.71 -0.82 3.88 16 29 H 0.16 2.28 8.06 -2.91 -0.02 2.25 16 30 H 0.14 3.20 8.06 -2.91 -0.02 3.18 16 Total: -1.00 -63.27 274.05 -0.71 -63.98 By element: Atomic # 1 Polarization: 38.72 SS G_CDS: -1.80 Total: 36.92 kcal Atomic # 6 Polarization: -42.79 SS G_CDS: 2.14 Total: -40.65 kcal Atomic # 7 Polarization: -105.40 SS G_CDS: -1.81 Total: -107.21 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Atomic # 16 Polarization: 2.90 SS G_CDS: -1.26 Total: 1.64 kcal Total: -63.27 -0.71 -63.98 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238601734.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.686 kcal (2) G-P(sol) polarization free energy of solvation -63.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds