Wall clock time and date at job start Mon Mar 30 2020 06:02:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50711 * 1 3 3 S 1.76172 * 126.06470 * 2 1 4 4 C 1.70908 * 90.45440 * 180.08973 * 3 2 1 5 5 C 1.50699 * 124.72797 * 179.97438 * 4 3 2 6 6 C 1.50702 * 109.47333 * 269.69545 * 5 4 3 7 7 H 1.08001 * 119.99511 * 0.02562 * 6 5 4 8 8 C 1.37878 * 120.00140 * 179.72160 * 6 5 4 9 9 N 1.31515 * 119.99687 * 180.27746 * 8 6 5 10 10 Si 1.86798 * 120.00048 * 0.28258 * 8 6 5 11 11 H 1.48498 * 109.47048 * 89.99273 * 10 8 6 12 12 H 1.48491 * 109.47151 * 209.99452 * 10 8 6 13 13 H 1.48501 * 109.47058 * 329.99426 * 10 8 6 14 14 N 1.28791 * 110.53369 * 359.69175 * 4 3 2 15 15 C 1.32607 * 117.12110 * 0.24175 * 14 4 3 16 16 C 1.47932 * 122.98969 * 180.02562 * 15 14 4 17 17 C 1.36197 * 126.05408 * 321.69398 * 16 15 14 18 18 C 1.40560 * 107.36241 * 179.85044 * 17 16 15 19 19 C 1.34970 * 107.67900 * 0.41565 * 18 17 16 20 20 N 1.36537 * 108.46455 * 359.74641 * 19 18 17 21 21 H 0.97002 * 125.69858 * 179.97438 * 20 19 18 22 22 H 1.09001 * 109.47006 * 265.00455 * 1 2 3 23 23 H 1.08998 * 109.46738 * 25.00114 * 1 2 3 24 24 H 1.08996 * 109.46864 * 145.00500 * 1 2 3 25 25 H 1.09000 * 109.47101 * 149.69810 * 5 4 3 26 26 H 1.08997 * 109.47412 * 29.69654 * 5 4 3 27 27 H 0.97003 * 119.99327 * 180.02562 * 9 8 6 28 28 H 1.08003 * 126.31438 * 359.97438 * 17 16 15 29 29 H 1.07995 * 126.15501 * 180.15995 * 18 17 16 30 30 H 1.07995 * 125.76637 * 179.77694 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 16 2.5442 1.4241 0.0000 4 6 3.9337 0.4289 -0.0027 5 6 5.3528 0.9360 -0.0046 6 6 5.8263 1.0987 -1.4260 7 1 5.1654 0.8593 -2.2460 8 6 7.1009 1.5592 -1.6796 9 7 7.5122 1.7063 -2.9201 10 14 8.2437 1.9738 -0.2614 11 1 9.0223 0.7669 0.1160 12 1 9.1747 3.0540 -0.6754 13 1 7.4425 2.4300 0.9028 14 7 3.5987 -0.8146 0.0031 15 6 2.3019 -1.0914 0.0048 16 6 1.7731 -2.4729 0.0118 17 6 2.2933 -3.5338 -0.6656 18 6 1.4893 -4.6503 -0.3779 19 6 0.5048 -4.2437 0.4511 20 7 0.6691 -2.9107 0.6965 21 1 0.0996 -2.3646 1.2608 22 1 -0.3633 -0.0895 1.0238 23 1 -0.3633 0.9314 -0.4343 24 1 -0.3633 -0.8418 -0.5894 25 1 5.9943 0.2224 0.5126 26 1 5.3955 1.8986 0.5050 27 1 8.4091 2.0299 -3.0985 28 1 3.1642 -3.5201 -1.3042 29 1 1.6313 -5.6520 -0.7557 30 1 -0.2799 -4.8676 0.8528 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259068410.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:02 Heat of formation + Delta-G solvation = 78.614772 kcal Electronic energy + Delta-G solvation = -14960.544976 eV Core-core repulsion = 12462.049304 eV Total energy + Delta-G solvation = -2498.495673 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.068 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.97286 -38.88481 -33.79798 -32.41066 -30.85173 -30.02521 -28.97956 -25.68261 -23.88461 -22.26042 -20.46804 -20.14917 -18.98730 -17.65400 -16.93145 -16.63120 -14.75285 -14.50108 -14.10638 -13.66754 -13.55541 -13.38085 -13.08739 -12.73937 -12.66476 -12.41134 -12.11479 -12.00274 -11.65166 -10.84798 -10.71021 -10.61740 -10.13313 -9.53643 -8.95294 -8.80630 -8.74635 -8.64918 -8.50916 -7.48674 -6.14320 -4.15847 1.10773 1.83530 2.25071 2.33732 3.04625 3.22054 3.26414 3.33538 3.33979 3.72996 4.34820 4.70518 5.07217 5.15898 5.18403 5.24653 5.40798 5.59990 5.62063 5.73807 5.84338 6.04229 6.28976 6.51876 6.57089 6.81337 6.91110 7.11029 7.22488 7.50256 7.62016 8.35338 8.40459 8.87594 9.42492 10.98221 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.029531 B = 0.006046 C = 0.005401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.943392 B = 4630.184384 C = 5183.323213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.263 4.263 3 S 0.108 5.892 4 C 0.129 3.871 5 C 0.051 3.949 6 C -0.517 4.517 7 H 0.076 0.924 8 C 0.076 3.924 9 N -0.893 5.893 10 Si 0.876 3.124 11 H -0.272 1.272 12 H -0.284 1.284 13 H -0.264 1.264 14 N -0.473 5.473 15 C 0.135 3.865 16 C 0.088 3.912 17 C -0.156 4.156 18 C -0.201 4.201 19 C -0.013 4.013 20 N -0.554 5.554 21 H 0.411 0.589 22 H 0.064 0.936 23 H 0.070 0.930 24 H 0.071 0.929 25 H 0.050 0.950 26 H 0.042 0.958 27 H 0.267 0.733 28 H 0.140 0.860 29 H 0.136 0.864 30 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.090 -5.634 8.461 18.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.385 4.385 3 S 0.367 5.633 4 C -0.150 4.150 5 C 0.010 3.990 6 C -0.556 4.556 7 H 0.094 0.906 8 C -0.127 4.127 9 N -0.530 5.530 10 Si 0.703 3.297 11 H -0.198 1.198 12 H -0.209 1.209 13 H -0.189 1.189 14 N -0.186 5.186 15 C 0.003 3.997 16 C -0.026 4.026 17 C -0.181 4.181 18 C -0.226 4.226 19 C -0.144 4.144 20 N -0.150 5.150 21 H 0.247 0.753 22 H 0.083 0.917 23 H 0.089 0.911 24 H 0.090 0.910 25 H 0.068 0.932 26 H 0.060 0.940 27 H 0.077 0.923 28 H 0.158 0.842 29 H 0.154 0.846 30 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -14.745 -4.757 8.447 17.646 hybrid contribution 0.180 -0.423 0.735 0.866 sum -14.565 -5.179 9.181 17.980 Atomic orbital electron populations 1.20122 0.87782 1.03157 1.01605 1.25751 1.00635 0.95503 1.16578 1.83816 0.99136 1.11160 1.69217 1.27450 1.01702 0.89537 0.96356 1.18596 0.83819 0.96381 1.00157 1.20736 0.99933 1.45464 0.89452 0.90581 1.24898 0.97516 0.94613 0.95675 1.69881 1.18763 1.45734 1.18648 0.86830 0.81201 0.78758 0.82938 1.19784 1.20949 1.18867 1.66211 1.15423 1.18827 1.18103 1.17722 0.87814 0.90689 1.03511 1.17667 0.91577 0.91570 1.01781 1.21030 1.01889 0.91290 1.03936 1.20859 0.98209 0.99208 1.04320 1.21822 1.03407 0.83851 1.05340 1.42062 1.23962 1.09329 1.39681 0.75261 0.91717 0.91080 0.90988 0.93190 0.93990 0.92325 0.84205 0.84609 0.81866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.79 9.08 36.01 0.33 -0.46 16 2 C -0.26 -4.34 6.63 -35.45 -0.24 -4.58 16 3 S 0.11 1.96 23.16 -107.50 -2.49 -0.53 16 4 C 0.13 2.85 6.55 -13.55 -0.09 2.76 16 5 C 0.05 1.23 4.62 -29.03 -0.13 1.10 16 6 C -0.52 -14.62 9.65 -34.44 -0.33 -14.95 16 7 H 0.08 2.38 7.98 -52.49 -0.42 1.96 16 8 C 0.08 2.16 5.47 -17.82 -0.10 2.07 16 9 N -0.89 -27.01 13.96 55.43 0.77 -26.23 16 10 Si 0.88 20.87 27.47 -169.99 -4.67 16.20 16 11 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 H -0.26 -5.92 6.54 56.52 0.37 -5.55 16 14 N -0.47 -10.52 10.55 -8.50 -0.09 -10.61 16 15 C 0.14 2.57 6.62 -84.71 -0.56 2.01 16 16 C 0.09 1.46 6.43 -82.28 -0.53 0.93 16 17 C -0.16 -2.61 10.80 -39.44 -0.43 -3.04 16 18 C -0.20 -2.68 10.83 -39.87 -0.43 -3.12 16 19 C -0.01 -0.14 11.93 -16.62 -0.20 -0.34 16 20 N -0.55 -6.85 5.51 -9.42 -0.05 -6.91 16 21 H 0.41 3.92 8.08 -40.82 -0.33 3.59 16 22 H 0.06 0.60 8.01 -51.93 -0.42 0.18 16 23 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 24 H 0.07 0.81 7.58 -51.93 -0.39 0.42 16 25 H 0.05 1.20 7.58 -51.93 -0.39 0.81 16 26 H 0.04 0.95 7.19 -51.93 -0.37 0.58 16 27 H 0.27 7.50 8.31 -40.82 -0.34 7.17 16 28 H 0.14 2.49 8.06 -52.48 -0.42 2.07 16 29 H 0.14 1.51 8.06 -52.49 -0.42 1.09 16 30 H 0.16 1.19 8.06 -52.49 -0.42 0.77 16 LS Contribution 277.05 15.07 4.18 4.18 Total: -1.00 -32.17 277.05 -8.24 -40.41 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: -3.18 Total: 1.11 kcal Atomic # 6 Polarization: -14.91 SS G_CDS: -2.71 Total: -17.62 kcal Atomic # 7 Polarization: -44.38 SS G_CDS: 0.63 Total: -43.75 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -4.67 Total: 16.20 kcal Atomic # 16 Polarization: 1.96 SS G_CDS: -2.49 Total: -0.53 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -32.17 -8.24 -40.41 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259068410.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.023 kcal (2) G-P(sol) polarization free energy of solvation -32.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.408 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds