Wall clock time and date at job start Mon Mar 30 2020 06:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86804 * 120.00142 * 2 1 4 4 H 1.48502 * 109.47013 * 239.99707 * 3 2 1 5 5 H 1.48498 * 109.46932 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47215 * 119.99497 * 3 2 1 7 7 C 1.37873 * 120.00113 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00249 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99874 * 0.02562 * 7 2 1 10 10 C 1.53009 * 109.47044 * 179.97438 * 9 7 2 11 11 C 1.50708 * 109.46915 * 179.97438 * 10 9 7 12 12 C 1.38342 * 119.99749 * 270.02532 * 11 10 9 13 13 C 1.37736 * 119.51306 * 180.34127 * 12 11 10 14 14 C 1.39627 * 120.62401 * 0.05347 * 13 12 11 15 15 C 1.38178 * 119.97541 * 359.26482 * 14 13 12 16 16 C 1.37772 * 119.99151 * 89.99955 * 11 10 9 17 17 C 1.50038 * 124.75291 * 181.12443 * 15 14 13 18 18 C 1.51886 * 113.55698 * 336.78776 * 17 15 14 19 19 C 1.53520 * 108.96713 * 60.55889 * 18 17 15 20 20 S 1.76671 * 117.70547 * 178.58368 * 14 13 12 21 21 H 0.97002 * 119.99668 * 0.02562 * 1 2 3 22 22 H 1.08999 * 109.47269 * 60.00068 * 9 7 2 23 23 H 1.09005 * 109.47102 * 299.99635 * 9 7 2 24 24 H 1.08994 * 109.46901 * 60.00537 * 10 9 7 25 25 H 1.08993 * 109.47466 * 299.99617 * 10 9 7 26 26 H 1.07996 * 120.24010 * 0.36308 * 12 11 10 27 27 H 1.07998 * 119.68944 * 180.02562 * 13 12 11 28 28 H 1.07995 * 119.47159 * 359.94382 * 16 11 10 29 29 H 1.08995 * 108.67016 * 215.72854 * 17 15 14 30 30 H 1.09001 * 108.66930 * 97.83569 * 17 15 14 31 31 H 1.09001 * 109.54921 * 300.71041 * 18 17 15 32 32 H 1.09003 * 109.64060 * 180.45938 * 18 17 15 33 33 H 1.09002 * 109.88799 * 46.86958 * 19 18 17 34 34 H 1.09000 * 109.88593 * 167.88791 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4917 -4.9672 0.0012 12 6 1.1458 -5.5656 1.1996 13 6 0.4633 -6.7619 1.1885 14 6 0.1201 -7.3738 -0.0187 15 6 0.4520 -6.7712 -1.2170 16 6 1.1470 -5.5640 -1.1918 17 6 0.1157 -7.3200 -2.5723 18 6 -0.1184 -8.8207 -2.5786 19 6 -1.2978 -9.1456 -1.6510 20 16 -0.7211 -8.9256 0.0570 21 1 -0.4850 0.8401 -0.0004 22 1 0.6247 -2.5570 -0.8897 23 1 0.6240 -2.5566 0.8904 24 1 2.8718 -3.6043 0.8905 25 1 2.8719 -3.6044 -0.8894 26 1 1.4087 -5.0979 2.1368 27 1 0.1915 -7.2313 2.1224 28 1 1.4202 -5.0886 -2.1222 29 1 0.9349 -7.0919 -3.2542 30 1 -0.7849 -6.8250 -2.9356 31 1 0.7768 -9.3310 -2.2231 32 1 -0.3489 -9.1514 -3.5913 33 1 -2.1263 -8.4667 -1.8530 34 1 -1.6173 -10.1763 -1.8046 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259075063.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:55 Heat of formation + Delta-G solvation = -7.040659 kcal Electronic energy + Delta-G solvation = -15143.538122 eV Core-core repulsion = 12744.868495 eV Total energy + Delta-G solvation = -2398.669628 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.29295 -35.86710 -33.84128 -32.01463 -30.83188 -28.90484 -26.92429 -25.11090 -22.84736 -22.21888 -21.02324 -19.47684 -17.41410 -16.35607 -15.64136 -15.48296 -14.90104 -14.48735 -14.16488 -13.70979 -13.57717 -13.06625 -12.80750 -12.40999 -12.33101 -12.23775 -11.71584 -11.40817 -11.23399 -11.02723 -10.89217 -10.74221 -10.46266 -9.97374 -9.83434 -9.73090 -9.14448 -8.90146 -8.45325 -8.34816 -7.17074 -6.00528 -4.04025 1.50514 1.65465 1.70302 2.44244 3.32722 3.37264 3.39512 3.98980 4.45221 4.51200 4.61472 4.75398 5.08237 5.20713 5.27512 5.34915 5.41684 5.48548 5.58799 5.68816 5.81104 5.85185 5.93206 6.13429 6.16132 6.45596 6.57487 6.62882 6.72622 6.96650 7.10300 7.30684 7.66273 7.80102 7.98905 8.39211 9.02783 9.60125 11.10399 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.044101 B = 0.004365 C = 0.004228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.747926 B = 6413.843114 C = 6621.612316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.524 4.524 8 H 0.055 0.945 9 C 0.031 3.969 10 C -0.080 4.080 11 C -0.051 4.051 12 C -0.107 4.107 13 C -0.098 4.098 14 C -0.092 4.092 15 C -0.081 4.081 16 C -0.112 4.112 17 C -0.086 4.086 18 C -0.120 4.120 19 C -0.102 4.102 20 S -0.146 6.146 21 H 0.261 0.739 22 H 0.017 0.983 23 H 0.018 0.982 24 H 0.061 0.939 25 H 0.060 0.940 26 H 0.127 0.873 27 H 0.121 0.879 28 H 0.122 0.878 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.089 0.911 34 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.812 -17.780 -3.514 18.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.562 4.562 8 H 0.074 0.926 9 C -0.007 4.007 10 C -0.118 4.118 11 C -0.053 4.053 12 C -0.127 4.127 13 C -0.120 4.120 14 C -0.204 4.204 15 C -0.086 4.086 16 C -0.132 4.132 17 C -0.123 4.123 18 C -0.159 4.159 19 C -0.250 4.250 20 S 0.094 5.906 21 H 0.071 0.929 22 H 0.035 0.965 23 H 0.036 0.964 24 H 0.079 0.921 25 H 0.078 0.922 26 H 0.145 0.855 27 H 0.139 0.861 28 H 0.140 0.860 29 H 0.100 0.900 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.099 0.901 33 H 0.108 0.892 34 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -1.207 -18.493 -2.630 18.718 hybrid contribution 0.505 1.908 -0.991 2.208 sum -0.702 -16.586 -3.621 16.991 Atomic orbital electron populations 1.69962 1.06077 1.26743 1.50553 1.25018 0.94831 0.99232 0.95256 0.86655 0.79581 0.83108 0.78638 1.20230 1.21276 1.20197 1.21215 0.93022 0.90969 1.50997 0.92627 1.19069 0.93636 0.90411 0.97537 1.20861 0.98364 0.91129 1.01424 1.20320 0.96237 0.96213 0.92497 1.20992 0.98670 0.94625 0.98375 1.20801 0.99568 0.95767 0.95883 1.21074 1.05391 0.98362 0.95569 1.19469 0.99824 0.96242 0.93088 1.21122 0.99244 0.94462 0.98354 1.20229 1.02833 0.95043 0.94199 1.21602 0.97771 0.96594 0.99903 1.23711 1.01059 1.05693 0.94577 1.85343 1.67483 1.22671 1.15058 0.92912 0.96498 0.96394 0.92065 0.92173 0.85481 0.86100 0.86024 0.90025 0.90508 0.90396 0.90149 0.89217 0.87518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.01 13.29 55.43 0.74 -26.28 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.52 -14.78 9.11 -34.44 -0.31 -15.10 16 8 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.03 0.79 4.96 -27.88 -0.14 0.65 16 10 C -0.08 -1.67 5.28 -27.87 -0.15 -1.81 16 11 C -0.05 -0.94 5.12 -104.75 -0.54 -1.48 16 12 C -0.11 -1.83 9.72 -39.73 -0.39 -2.22 16 13 C -0.10 -1.55 9.65 -39.25 -0.38 -1.92 16 14 C -0.09 -1.42 6.06 -39.09 -0.24 -1.66 16 15 C -0.08 -1.23 5.77 -104.56 -0.60 -1.83 16 16 C -0.11 -1.90 9.13 -39.35 -0.36 -2.26 16 17 C -0.09 -1.00 5.28 -28.77 -0.15 -1.15 16 18 C -0.12 -1.13 5.84 -27.03 -0.16 -1.29 16 19 C -0.10 -1.00 6.52 37.43 0.24 -0.75 16 20 S -0.15 -1.89 22.01 -107.50 -2.37 -4.26 16 21 H 0.26 7.45 8.31 -40.82 -0.34 7.12 16 22 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 23 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.06 1.22 8.08 -51.93 -0.42 0.80 16 25 H 0.06 1.20 8.08 -51.93 -0.42 0.78 16 26 H 0.13 2.02 8.06 -52.49 -0.42 1.60 16 27 H 0.12 1.69 8.05 -52.49 -0.42 1.26 16 28 H 0.12 1.94 8.01 -52.49 -0.42 1.52 16 29 H 0.08 0.86 8.00 -51.93 -0.42 0.45 16 30 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.08 0.78 8.03 -51.93 -0.42 0.36 16 32 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.09 0.88 8.08 -51.93 -0.42 0.46 16 34 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 295.21 15.07 4.45 4.45 Total: -1.00 -30.54 295.21 -10.48 -41.02 By element: Atomic # 1 Polarization: 2.77 SS G_CDS: -5.01 Total: -2.24 kcal Atomic # 6 Polarization: -26.00 SS G_CDS: -3.26 Total: -29.26 kcal Atomic # 7 Polarization: -27.01 SS G_CDS: 0.74 Total: -26.28 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: -1.89 SS G_CDS: -2.37 Total: -4.26 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -30.54 -10.48 -41.02 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259075063.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.977 kcal (2) G-P(sol) polarization free energy of solvation -30.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds