Wall clock time and date at job start Mon Mar 30 2020 06:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86804 * 120.00142 * 2 1 4 4 H 1.48502 * 109.47013 * 239.99707 * 3 2 1 5 5 H 1.48498 * 109.46932 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47215 * 119.99497 * 3 2 1 7 7 C 1.37873 * 120.00113 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00249 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99874 * 0.02562 * 7 2 1 10 10 C 1.53009 * 109.47044 * 179.97438 * 9 7 2 11 11 C 1.50708 * 109.46915 * 179.97438 * 10 9 7 12 12 C 1.38342 * 119.99749 * 270.02532 * 11 10 9 13 13 C 1.37736 * 119.51306 * 180.34127 * 12 11 10 14 14 C 1.39627 * 120.62401 * 0.05347 * 13 12 11 15 15 C 1.38178 * 119.97541 * 359.26482 * 14 13 12 16 16 C 1.37772 * 119.99151 * 89.99955 * 11 10 9 17 17 C 1.50038 * 124.75291 * 181.12443 * 15 14 13 18 18 C 1.51886 * 113.55698 * 336.78776 * 17 15 14 19 19 C 1.53520 * 108.96713 * 60.55889 * 18 17 15 20 20 S 1.76671 * 117.70547 * 178.58368 * 14 13 12 21 21 H 0.97002 * 119.99668 * 0.02562 * 1 2 3 22 22 H 1.08999 * 109.47269 * 60.00068 * 9 7 2 23 23 H 1.09005 * 109.47102 * 299.99635 * 9 7 2 24 24 H 1.08994 * 109.46901 * 60.00537 * 10 9 7 25 25 H 1.08993 * 109.47466 * 299.99617 * 10 9 7 26 26 H 1.07996 * 120.24010 * 0.36308 * 12 11 10 27 27 H 1.07998 * 119.68944 * 180.02562 * 13 12 11 28 28 H 1.07995 * 119.47159 * 359.94382 * 16 11 10 29 29 H 1.08995 * 108.67016 * 215.72854 * 17 15 14 30 30 H 1.09001 * 108.66930 * 97.83569 * 17 15 14 31 31 H 1.09001 * 109.54921 * 300.71041 * 18 17 15 32 32 H 1.09003 * 109.64060 * 180.45938 * 18 17 15 33 33 H 1.09002 * 109.88799 * 46.86958 * 19 18 17 34 34 H 1.09000 * 109.88593 * 167.88791 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4917 -4.9672 0.0012 12 6 1.1458 -5.5656 1.1996 13 6 0.4633 -6.7619 1.1885 14 6 0.1201 -7.3738 -0.0187 15 6 0.4520 -6.7712 -1.2170 16 6 1.1470 -5.5640 -1.1918 17 6 0.1157 -7.3200 -2.5723 18 6 -0.1184 -8.8207 -2.5786 19 6 -1.2978 -9.1456 -1.6510 20 16 -0.7211 -8.9256 0.0570 21 1 -0.4850 0.8401 -0.0004 22 1 0.6247 -2.5570 -0.8897 23 1 0.6240 -2.5566 0.8904 24 1 2.8718 -3.6043 0.8905 25 1 2.8719 -3.6044 -0.8894 26 1 1.4087 -5.0979 2.1368 27 1 0.1915 -7.2313 2.1224 28 1 1.4202 -5.0886 -2.1222 29 1 0.9349 -7.0919 -3.2542 30 1 -0.7849 -6.8250 -2.9356 31 1 0.7768 -9.3310 -2.2231 32 1 -0.3489 -9.1514 -3.5913 33 1 -2.1263 -8.4667 -1.8530 34 1 -1.6173 -10.1763 -1.8046 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259075063.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:55 Heat of formation + Delta-G solvation = -21.883131 kcal Electronic energy + Delta-G solvation = -15144.181740 eV Core-core repulsion = 12744.868495 eV Total energy + Delta-G solvation = -2399.313245 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.53719 -36.97357 -35.62491 -33.81884 -31.94647 -30.61132 -27.88099 -26.98979 -23.97458 -23.78338 -22.43760 -20.78798 -18.54786 -18.49137 -16.84307 -16.54307 -16.44075 -16.13399 -15.28853 -14.79080 -14.65306 -14.54965 -14.31671 -13.94060 -13.84483 -13.55856 -12.97310 -12.83397 -12.77889 -12.49830 -12.32955 -12.23790 -11.84967 -11.66308 -11.48413 -11.14743 -10.95782 -10.56452 -10.29224 -9.68291 -8.30387 -8.18412 -6.32926 0.24917 0.38475 0.67210 1.40211 1.43474 1.46072 1.51465 2.40491 2.69577 3.12502 3.62885 3.80149 3.82875 3.96026 4.07014 4.34499 4.37642 4.43208 4.57738 4.60939 4.70921 4.74616 4.85019 4.93401 4.97122 5.10446 5.14127 5.19740 5.32561 5.45047 5.48241 5.54335 5.82122 5.86104 5.98534 6.21547 6.83728 7.36776 8.91102 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.044101 B = 0.004365 C = 0.004228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.747926 B = 6413.843114 C = 6621.612316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.000 4.000 3 Si 0.967 3.033 4 H -0.265 1.265 5 H -0.283 1.283 6 H -0.266 1.266 7 C -0.546 4.546 8 H 0.064 0.936 9 C 0.038 3.962 10 C -0.065 4.065 11 C -0.078 4.078 12 C -0.119 4.119 13 C -0.104 4.104 14 C -0.101 4.101 15 C -0.083 4.083 16 C -0.123 4.123 17 C -0.089 4.089 18 C -0.114 4.114 19 C -0.097 4.097 20 S -0.154 6.154 21 H 0.264 0.736 22 H -0.012 1.012 23 H -0.012 1.012 24 H 0.065 0.935 25 H 0.065 0.935 26 H 0.130 0.870 27 H 0.138 0.862 28 H 0.125 0.875 29 H 0.092 0.908 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.113 0.887 33 H 0.092 0.908 34 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.551 -19.038 -4.536 19.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.197 4.197 3 Si 0.791 3.209 4 H -0.190 1.190 5 H -0.209 1.209 6 H -0.191 1.191 7 C -0.584 4.584 8 H 0.082 0.918 9 C 0.001 3.999 10 C -0.102 4.102 11 C -0.080 4.080 12 C -0.139 4.139 13 C -0.126 4.126 14 C -0.212 4.212 15 C -0.089 4.089 16 C -0.143 4.143 17 C -0.126 4.126 18 C -0.152 4.152 19 C -0.245 4.245 20 S 0.087 5.913 21 H 0.072 0.928 22 H 0.007 0.993 23 H 0.007 0.993 24 H 0.083 0.917 25 H 0.083 0.917 26 H 0.148 0.852 27 H 0.155 0.845 28 H 0.143 0.857 29 H 0.111 0.889 30 H 0.100 0.900 31 H 0.092 0.908 32 H 0.132 0.868 33 H 0.111 0.889 34 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -0.935 -19.771 -3.651 20.127 hybrid contribution 0.341 2.183 -0.699 2.317 sum -0.594 -17.589 -4.350 18.128 Atomic orbital electron populations 1.70109 1.07943 1.27874 1.51505 1.26000 0.95726 1.03437 0.94572 0.85479 0.78248 0.77902 0.79295 1.19003 1.20887 1.19070 1.21680 0.93677 0.92147 1.50854 0.91809 1.18897 0.93956 0.92365 0.94659 1.20572 0.97274 0.90571 1.01813 1.20190 0.98022 0.95926 0.93880 1.21093 0.99273 0.95422 0.98113 1.21039 0.99136 0.95357 0.97087 1.21420 1.04815 0.99555 0.95455 1.19879 0.98634 0.95430 0.94943 1.21290 0.99679 0.95379 0.97917 1.20347 1.03431 0.96814 0.92031 1.21597 0.97420 0.94583 1.01624 1.23912 1.01161 1.07567 0.91848 1.85360 1.66932 1.20464 1.18526 0.92761 0.99320 0.99341 0.91667 0.91656 0.85177 0.84469 0.85676 0.88916 0.90008 0.90781 0.86847 0.88923 0.84582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.80 13.29 21.44 0.28 -57.52 16 2 C 0.00 0.02 5.46 84.65 0.46 0.49 16 3 Si 0.97 44.42 29.54 68.60 2.03 46.44 16 4 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 5 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 6 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 7 C -0.55 -31.42 9.11 25.60 0.23 -31.19 16 8 H 0.06 3.48 7.74 -2.91 -0.02 3.45 16 9 C 0.04 2.08 4.96 29.85 0.15 2.23 16 10 C -0.06 -2.78 5.28 29.85 0.16 -2.62 16 11 C -0.08 -2.99 5.12 -19.95 -0.10 -3.09 16 12 C -0.12 -4.21 9.72 22.18 0.22 -3.99 16 13 C -0.10 -3.28 9.65 22.49 0.22 -3.06 16 14 C -0.10 -3.02 6.06 22.59 0.14 -2.89 16 15 C -0.08 -2.46 5.77 -19.82 -0.11 -2.58 16 16 C -0.12 -4.23 9.13 22.42 0.20 -4.02 16 17 C -0.09 -1.88 5.28 29.27 0.15 -1.73 16 18 C -0.11 -1.75 5.84 30.40 0.18 -1.57 16 19 C -0.10 -1.56 6.52 72.16 0.47 -1.09 16 20 S -0.15 -3.67 22.01 -56.49 -1.24 -4.91 16 21 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 22 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 23 H -0.01 -0.70 8.14 -2.38 -0.02 -0.72 16 24 H 0.06 2.67 8.08 -2.39 -0.02 2.65 16 25 H 0.06 2.66 8.08 -2.39 -0.02 2.64 16 26 H 0.13 4.32 8.06 -2.91 -0.02 4.30 16 27 H 0.14 3.77 8.05 -2.91 -0.02 3.74 16 28 H 0.13 4.07 8.01 -2.91 -0.02 4.04 16 29 H 0.09 1.75 8.00 -2.39 -0.02 1.73 16 30 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.07 1.24 8.03 -2.39 -0.02 1.22 16 32 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.09 1.50 8.08 -2.39 -0.02 1.48 16 34 H 0.14 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -67.00 295.21 4.49 -62.51 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: 1.06 Total: 8.59 kcal Atomic # 6 Polarization: -57.47 SS G_CDS: 2.36 Total: -55.11 kcal Atomic # 7 Polarization: -57.80 SS G_CDS: 0.28 Total: -57.52 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.44 kcal Atomic # 16 Polarization: -3.67 SS G_CDS: -1.24 Total: -4.91 kcal Total: -67.00 4.49 -62.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259075063.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.624 kcal (2) G-P(sol) polarization free energy of solvation -67.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds