Wall clock time and date at job start Mon Mar 30 2020 06:02:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 N 1.30107 * 124.94171 * 2 1 4 4 C 1.35793 * 109.64270 * 179.97438 * 3 2 1 5 5 C 1.39671 * 133.56752 * 180.02562 * 4 3 2 6 6 C 1.38491 * 119.55023 * 179.97438 * 5 4 3 7 7 S 1.76200 * 119.83957 * 179.97438 * 6 5 4 8 8 C 1.76200 * 99.99825 * 94.56068 * 7 6 5 9 9 H 1.08007 * 119.99955 * 354.88914 * 8 7 6 10 10 C 1.38694 * 119.99959 * 174.61490 * 8 7 6 11 11 N 1.31657 * 119.99651 * 180.27721 * 10 8 7 12 12 Si 1.86796 * 120.00062 * 0.27380 * 10 8 7 13 13 H 1.48504 * 109.47169 * 89.99795 * 12 10 8 14 14 H 1.48500 * 109.47287 * 210.00340 * 12 10 8 15 15 H 1.48500 * 109.47007 * 329.99982 * 12 10 8 16 16 C 1.39577 * 120.31955 * 0.25207 * 6 5 4 17 17 C 1.36645 * 120.51077 * 359.49419 * 16 6 5 18 18 C 1.38915 * 120.07924 * 0.49618 * 17 16 6 19 19 N 1.36015 * 124.93622 * 179.97438 * 2 1 3 20 20 C 1.46498 * 126.34342 * 0.04062 * 19 2 1 21 21 H 1.08993 * 109.47143 * 90.02074 * 1 2 3 22 22 H 1.08995 * 109.46856 * 210.02049 * 1 2 3 23 23 H 1.09003 * 109.46499 * 330.02146 * 1 2 3 24 24 H 1.07996 * 120.22281 * 359.97438 * 5 4 3 25 25 H 0.96999 * 119.99265 * 180.02562 * 11 10 8 26 26 H 1.07997 * 119.73937 * 179.74132 * 16 6 5 27 27 H 1.08000 * 119.96136 * 180.23566 * 17 16 6 28 28 H 1.09000 * 109.47144 * 90.02780 * 20 19 2 29 29 H 1.09011 * 109.47024 * 210.02651 * 20 19 2 30 30 H 1.09004 * 109.47497 * 330.02175 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2523 1.0665 0.0000 4 6 3.5621 0.7082 0.0006 5 6 4.7576 1.4304 0.0013 6 6 5.9651 0.7523 0.0023 7 16 7.4779 1.6557 0.0025 8 6 7.8105 1.6951 1.7324 9 1 7.0886 1.2971 2.4303 10 6 9.0017 2.2320 2.1975 11 7 9.2525 2.2564 3.4897 12 14 10.2502 2.9202 0.9905 13 1 9.9769 4.3622 0.7640 14 1 11.6178 2.7568 1.5458 15 1 10.1485 2.1888 -0.2978 16 6 5.9896 -0.6433 -0.0027 17 6 4.8247 -1.3575 0.0017 18 6 3.6028 -0.6967 0.0009 19 7 2.2860 -1.1150 0.0005 20 6 1.8158 -2.5025 0.0003 21 1 -0.3633 -0.0004 -1.0276 22 1 -0.3633 -0.8898 0.5141 23 1 -0.3632 0.8902 0.5135 24 1 4.7404 2.5102 0.0010 25 1 10.0854 2.6322 3.8150 26 1 6.9366 -1.1625 -0.0061 27 1 4.8540 -2.4372 0.0017 28 1 1.7003 -2.8468 -1.0274 29 1 2.5417 -3.1322 0.5150 30 1 0.8558 -2.5610 0.5132 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259144260.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:26 Heat of formation + Delta-G solvation = 45.191737 kcal Electronic energy + Delta-G solvation = -14945.383250 eV Core-core repulsion = 12445.438246 eV Total energy + Delta-G solvation = -2499.945004 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.068 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.15326 -38.37233 -35.24852 -34.68456 -32.35278 -31.45804 -28.60466 -27.94703 -27.72232 -23.41927 -23.17818 -21.08158 -19.97819 -18.41361 -18.02389 -17.11561 -16.99894 -16.68698 -15.55276 -15.07697 -14.96395 -14.45155 -14.27328 -14.20673 -13.99998 -13.62417 -13.40052 -13.10229 -13.04381 -12.84241 -12.62361 -12.14519 -11.85148 -11.39151 -11.19597 -11.02700 -10.76716 -9.24666 -9.14668 -9.04415 -8.50468 -6.24333 -0.05650 0.23809 1.10076 1.34027 1.47838 1.61029 1.72928 1.76437 2.25220 2.55593 2.87220 2.98103 3.21521 3.49634 3.85717 4.02982 4.25032 4.35581 4.40336 4.41599 4.59645 4.65222 4.70988 4.74690 4.99236 5.07855 5.34194 5.40767 5.46947 5.72165 5.75993 6.13403 6.22009 6.86231 6.91552 8.63334 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.045557 B = 0.005319 C = 0.005199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.460558 B = 5262.969210 C = 5384.505101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.281 3.719 3 N -0.541 5.541 4 C 0.013 3.987 5 C -0.045 4.045 6 C -0.112 4.112 7 S -0.104 6.104 8 C -0.524 4.524 9 H 0.042 0.958 10 C 0.042 3.958 11 N -0.923 5.923 12 Si 0.920 3.080 13 H -0.262 1.262 14 H -0.257 1.257 15 H -0.222 1.222 16 C -0.074 4.074 17 C -0.105 4.105 18 C 0.047 3.953 19 N -0.491 5.491 20 C 0.068 3.932 21 H 0.108 0.892 22 H 0.112 0.888 23 H 0.094 0.906 24 H 0.118 0.882 25 H 0.278 0.722 26 H 0.142 0.858 27 H 0.162 0.838 28 H 0.093 0.907 29 H 0.091 0.909 30 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.866 -11.852 -9.396 22.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.015 3.985 3 N -0.262 5.262 4 C -0.106 4.106 5 C -0.068 4.068 6 C -0.225 4.225 7 S 0.130 5.870 8 C -0.671 4.671 9 H 0.061 0.939 10 C -0.163 4.163 11 N -0.561 5.561 12 Si 0.740 3.260 13 H -0.186 1.186 14 H -0.181 1.181 15 H -0.145 1.145 16 C -0.096 4.096 17 C -0.128 4.128 18 C -0.063 4.063 19 N -0.182 5.182 20 C -0.072 4.072 21 H 0.126 0.874 22 H 0.131 0.869 23 H 0.113 0.887 24 H 0.136 0.864 25 H 0.087 0.913 26 H 0.160 0.840 27 H 0.179 0.821 28 H 0.112 0.888 29 H 0.110 0.890 30 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -16.430 -10.670 -10.114 22.047 hybrid contribution 0.443 -0.575 1.329 1.514 sum -15.988 -11.244 -8.784 21.429 Atomic orbital electron populations 1.20624 0.80277 1.06150 1.05818 1.24655 0.97620 0.80067 0.96167 1.70336 1.00816 1.29833 1.25229 1.19162 0.91983 0.91956 1.07450 1.20734 0.89064 0.99332 0.97632 1.21736 0.96544 0.97006 1.07186 1.82467 1.23023 1.71589 1.09930 1.22412 1.07315 1.46835 0.90554 0.93926 1.25724 0.99043 0.94466 0.97084 1.70057 1.26423 1.44984 1.14613 0.85795 0.78808 0.80384 0.80976 1.18622 1.18146 1.14509 1.21248 0.98925 0.92152 0.97310 1.19891 0.87679 1.00800 1.04382 1.19101 0.86966 0.94366 1.05865 1.45450 1.03049 1.09374 1.60293 1.22416 1.03089 0.76409 1.05245 0.87379 0.86907 0.88692 0.86409 0.91307 0.83974 0.82094 0.88826 0.89012 0.86331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.88 10.17 71.24 0.72 -0.15 16 2 C 0.28 7.22 7.85 137.93 1.08 8.30 16 3 N -0.54 -19.84 11.27 -179.98 -2.03 -21.87 16 4 C 0.01 0.54 7.23 39.44 0.29 0.83 16 5 C -0.05 -2.05 9.85 22.68 0.22 -1.83 16 6 C -0.11 -5.15 5.45 22.65 0.12 -5.02 16 7 S -0.10 -5.33 19.36 -56.49 -1.09 -6.43 16 8 C -0.52 -32.21 10.00 67.93 0.68 -31.53 16 9 H 0.04 2.92 8.02 -2.91 -0.02 2.90 16 10 C 0.04 2.49 5.50 84.83 0.47 2.96 16 11 N -0.92 -58.02 13.97 21.63 0.30 -57.72 16 12 Si 0.92 44.18 27.74 68.60 1.90 46.08 16 13 H -0.26 -12.26 7.11 99.48 0.71 -11.56 16 14 H -0.26 -11.57 7.11 99.48 0.71 -10.87 16 15 H -0.22 -10.11 6.73 99.48 0.67 -9.44 16 16 C -0.07 -2.89 9.72 22.22 0.22 -2.67 16 17 C -0.11 -3.33 9.98 22.06 0.22 -3.11 16 18 C 0.05 1.57 6.88 38.87 0.27 1.84 16 19 N -0.49 -11.79 3.21 -528.60 -1.70 -13.48 16 20 C 0.07 0.74 10.96 127.77 1.40 2.14 16 21 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 22 H 0.11 0.60 7.01 -2.39 -0.02 0.58 16 23 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 24 H 0.12 5.47 8.06 -2.91 -0.02 5.45 16 25 H 0.28 15.98 8.31 -92.71 -0.77 15.21 16 26 H 0.14 5.19 8.06 -2.91 -0.02 5.17 16 27 H 0.16 3.59 8.06 -2.91 -0.02 3.56 16 28 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.09 0.90 8.14 -2.38 -0.02 0.88 16 30 H 0.12 0.52 6.99 -2.38 -0.02 0.50 16 Total: -1.00 -80.64 277.15 4.18 -76.46 By element: Atomic # 1 Polarization: 4.10 SS G_CDS: 1.11 Total: 5.21 kcal Atomic # 6 Polarization: -33.94 SS G_CDS: 5.69 Total: -28.25 kcal Atomic # 7 Polarization: -89.65 SS G_CDS: -3.42 Total: -93.07 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 1.90 Total: 46.08 kcal Atomic # 16 Polarization: -5.33 SS G_CDS: -1.09 Total: -6.43 kcal Total: -80.64 4.18 -76.46 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259144260.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.651 kcal (2) G-P(sol) polarization free energy of solvation -80.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds