Wall clock time and date at job start Mon Mar 30 2020 06:02:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.31512 * 122.06793 * 2 1 4 4 C 1.30258 * 116.98094 * 179.97438 * 3 2 1 5 5 C 1.47827 * 125.47950 * 179.97438 * 4 3 2 6 6 C 1.42008 * 126.49332 * 0.02562 * 5 4 3 7 7 C 1.34539 * 107.30842 * 179.73699 * 6 5 4 8 8 N 1.36463 * 108.58601 * 0.22583 * 7 6 5 9 9 H 0.97004 * 125.47459 * 180.02562 * 8 7 6 10 10 C 1.36031 * 109.05254 * 0.02562 * 8 7 6 11 11 S 1.76174 * 109.04160 * 0.25570 * 4 3 2 12 12 C 1.33527 * 122.07586 * 179.97438 * 2 1 3 13 13 C 1.50709 * 125.86285 * 0.02562 * 12 2 1 14 14 C 1.50701 * 109.47034 * 89.99842 * 13 12 2 15 15 H 1.08002 * 120.00188 * 359.97438 * 14 13 12 16 16 C 1.37878 * 119.99765 * 179.97438 * 14 13 12 17 17 N 1.31515 * 120.00118 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 119.99839 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47255 * 0.02562 * 18 16 14 20 20 H 1.48508 * 109.47186 * 120.00019 * 18 16 14 21 21 H 1.48500 * 109.47545 * 240.00200 * 18 16 14 22 22 H 1.08994 * 109.47537 * 90.02775 * 1 2 3 23 23 H 1.09007 * 109.46889 * 210.02468 * 1 2 3 24 24 H 1.08998 * 109.47525 * 330.02242 * 1 2 3 25 25 H 1.08002 * 126.34907 * 0.02562 * 6 5 4 26 26 H 1.08005 * 125.71289 * 180.20796 * 7 6 5 27 27 H 1.08003 * 125.97382 * 180.02562 * 10 8 7 28 28 H 1.08994 * 109.46578 * 209.99768 * 13 12 2 29 29 H 1.08994 * 109.46970 * 329.99855 * 13 12 2 30 30 H 0.97000 * 119.99610 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2051 1.1145 0.0000 4 6 3.5026 0.9990 0.0005 5 6 4.4640 2.1219 0.0001 6 6 4.1460 3.5059 -0.0005 7 6 5.3082 4.1837 0.0052 8 7 6.3355 3.2854 0.0041 9 1 7.2792 3.5096 0.0077 10 6 5.8234 2.0252 -0.0028 11 16 3.9274 -0.7108 -0.0063 12 6 2.2160 -1.1314 0.0005 13 6 1.6499 -2.5282 0.0006 14 6 1.4618 -2.9940 -1.4202 15 1 1.7253 -2.3436 -2.2412 16 6 0.9532 -4.2506 -1.6721 17 7 0.6319 -5.0424 -0.6724 18 14 0.7193 -4.8277 -3.4332 19 1 1.1530 -3.7573 -4.3667 20 1 1.5338 -6.0474 -3.6667 21 1 -0.7142 -5.1376 -3.6664 22 1 -0.3634 -0.0005 -1.0276 23 1 -0.3633 -0.8898 0.5143 24 1 -0.3634 0.8901 0.5135 25 1 3.1548 3.9350 -0.0002 26 1 5.4110 5.2588 0.0095 27 1 6.3944 1.1084 -0.0049 28 1 2.3381 -3.1990 0.5148 29 1 0.6885 -2.5305 0.5140 30 1 0.2744 -5.9266 -0.8496 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259243660.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:24 Heat of formation + Delta-G solvation = 74.057009 kcal Electronic energy + Delta-G solvation = -14791.688399 eV Core-core repulsion = 12292.995087 eV Total energy + Delta-G solvation = -2498.693312 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.068 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.97508 -38.80707 -33.78099 -32.22803 -30.55878 -29.20289 -28.66921 -25.66213 -24.02199 -22.28062 -20.78079 -19.77859 -18.71675 -17.11827 -16.74919 -16.36922 -14.65671 -14.42388 -14.23148 -13.76298 -13.70454 -13.04709 -12.69380 -12.45875 -12.22709 -12.00658 -11.83467 -11.78207 -11.21674 -10.84561 -10.75624 -10.18414 -9.95596 -9.64277 -9.06114 -8.91108 -8.46224 -8.38757 -8.35624 -7.23757 -6.09254 -4.14091 1.27476 2.08061 2.31873 2.57434 3.02032 3.24368 3.27647 3.35463 3.41291 3.88123 4.41006 4.69811 5.11657 5.18758 5.25590 5.61530 5.64195 6.03930 6.08121 6.27090 6.34260 6.37729 6.57995 6.61659 6.85593 6.99008 7.14954 7.42570 7.48241 7.49839 7.85239 8.20717 8.54098 8.89695 9.50128 10.99853 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.037441 B = 0.005315 C = 0.005075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.657123 B = 5266.676669 C = 5515.971587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.019 3.981 3 N -0.457 5.457 4 C 0.112 3.888 5 C -0.088 4.088 6 C -0.156 4.156 7 C -0.025 4.025 8 N -0.555 5.555 9 H 0.416 0.584 10 C 0.009 3.991 11 S 0.038 5.962 12 C -0.130 4.130 13 C 0.084 3.916 14 C -0.511 4.511 15 H 0.058 0.942 16 C 0.061 3.939 17 N -0.893 5.893 18 Si 0.896 3.104 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.282 1.282 22 H 0.068 0.932 23 H 0.076 0.924 24 H 0.058 0.942 25 H 0.142 0.858 26 H 0.166 0.834 27 H 0.169 0.831 28 H 0.032 0.968 29 H 0.047 0.953 30 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.626 14.392 2.204 17.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.110 4.110 3 N -0.171 5.171 4 C -0.164 4.164 5 C -0.099 4.099 6 C -0.183 4.183 7 C -0.154 4.154 8 N -0.150 5.150 9 H 0.253 0.747 10 C -0.127 4.127 11 S 0.294 5.706 12 C -0.251 4.251 13 C 0.045 3.955 14 C -0.550 4.550 15 H 0.077 0.923 16 C -0.141 4.141 17 N -0.531 5.531 18 Si 0.724 3.276 19 H -0.196 1.196 20 H -0.209 1.209 21 H -0.208 1.208 22 H 0.087 0.913 23 H 0.095 0.905 24 H 0.077 0.923 25 H 0.160 0.840 26 H 0.183 0.817 27 H 0.186 0.814 28 H 0.050 0.950 29 H 0.065 0.935 30 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 10.372 14.178 2.241 17.709 hybrid contribution -0.549 -0.414 -0.996 1.210 sum 9.824 13.764 1.245 16.956 Atomic orbital electron populations 1.20211 0.87637 1.02020 1.02454 1.19859 0.98020 0.86044 1.07105 1.66341 1.04209 1.31167 1.15373 1.24597 0.91753 0.93338 1.06679 1.17198 0.90061 0.91133 1.11534 1.20946 0.98064 0.91744 1.07535 1.21762 0.86779 0.95314 1.11571 1.41784 1.08813 1.05798 1.58653 0.74721 1.21824 0.93544 0.88100 1.09233 1.84596 1.10473 1.03420 1.72096 1.26365 0.92312 1.02894 1.03526 1.17944 0.96198 0.83013 0.98329 1.21055 1.43037 0.99871 0.91029 0.92336 1.24979 0.95211 0.96468 0.97412 1.69955 1.43500 1.09001 1.30682 0.86453 0.77890 0.78706 0.84560 1.19622 1.20876 1.20791 0.91340 0.90549 0.92302 0.83975 0.81679 0.81409 0.95011 0.93475 0.92741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.23 10.02 36.00 0.36 -0.87 16 2 C 0.02 0.41 6.69 -84.38 -0.56 -0.15 16 3 N -0.46 -9.64 10.54 -7.56 -0.08 -9.72 16 4 C 0.11 2.17 7.50 -14.30 -0.11 2.07 16 5 C -0.09 -1.41 6.12 -105.23 -0.64 -2.05 16 6 C -0.16 -2.17 10.82 -39.45 -0.43 -2.60 16 7 C -0.02 -0.25 11.90 -16.80 -0.20 -0.45 16 8 N -0.56 -5.10 6.04 -12.63 -0.08 -5.17 16 9 H 0.42 2.18 8.96 -40.82 -0.37 1.81 16 10 C 0.01 0.11 11.73 -16.39 -0.19 -0.08 16 11 S 0.04 0.75 23.23 -107.50 -2.50 -1.74 16 12 C -0.13 -3.00 5.76 -35.95 -0.21 -3.21 16 13 C 0.08 2.18 5.16 -29.03 -0.15 2.03 16 14 C -0.51 -14.26 9.09 -34.44 -0.31 -14.58 16 15 H 0.06 1.66 7.74 -52.49 -0.41 1.25 16 16 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 17 N -0.89 -25.91 13.29 55.43 0.74 -25.18 16 18 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 19 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 23 H 0.08 1.48 6.62 -51.92 -0.34 1.14 16 24 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 25 H 0.14 1.98 8.06 -52.49 -0.42 1.56 16 26 H 0.17 1.09 8.06 -52.48 -0.42 0.66 16 27 H 0.17 1.76 8.06 -52.48 -0.42 1.34 16 28 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.05 1.25 6.67 -51.93 -0.35 0.90 16 30 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 281.11 15.07 4.24 4.24 Total: -1.00 -32.23 281.11 -8.38 -40.61 By element: Atomic # 1 Polarization: 1.95 SS G_CDS: -3.13 Total: -1.19 kcal Atomic # 6 Polarization: -15.74 SS G_CDS: -2.54 Total: -18.28 kcal Atomic # 7 Polarization: -40.66 SS G_CDS: 0.58 Total: -40.08 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: 0.75 SS G_CDS: -2.50 Total: -1.74 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -32.23 -8.38 -40.61 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259243660.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.664 kcal (2) G-P(sol) polarization free energy of solvation -32.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds