Wall clock time and date at job start Mon Mar 30 2020 05:46:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35987 * 116.99806 * 2 1 4 4 C 1.37550 * 119.84210 * 359.97438 * 3 2 1 5 5 C 1.41176 * 120.29915 * 179.97438 * 4 3 2 6 6 C 1.45406 * 129.25007 * 180.02562 * 5 4 3 7 7 C 1.31831 * 114.88761 * 179.97438 * 6 5 4 8 8 S 1.75288 * 111.40224 * 359.97438 * 7 6 5 9 9 C 1.39726 * 118.90588 * 0.03872 * 5 4 3 10 10 C 1.39806 * 119.91444 * 0.02562 * 9 5 4 11 11 C 1.37423 * 120.41261 * 359.97438 * 10 9 5 12 12 C 1.50708 * 119.92633 * 180.02562 * 11 10 9 13 13 C 1.50696 * 109.46845 * 264.99904 * 12 11 10 14 14 H 1.08000 * 120.00139 * 359.97438 * 13 12 11 15 15 C 1.37878 * 119.99769 * 180.02562 * 13 12 11 16 16 N 1.31516 * 120.00264 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99934 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47352 * 89.99660 * 17 15 13 19 19 H 1.48500 * 109.46755 * 209.99944 * 17 15 13 20 20 H 1.48497 * 109.47029 * 329.99172 * 17 15 13 21 21 H 1.08992 * 109.47462 * 300.00038 * 1 2 3 22 22 H 1.09001 * 109.46972 * 60.00212 * 1 2 3 23 23 H 1.09004 * 109.46980 * 180.02562 * 1 2 3 24 24 H 1.08007 * 119.84878 * 359.97296 * 4 3 2 25 25 H 1.08004 * 122.55734 * 359.72497 * 6 5 4 26 26 H 1.08004 * 124.29644 * 179.97438 * 7 6 5 27 27 H 1.08000 * 119.79096 * 179.97438 * 10 9 5 28 28 H 1.08996 * 109.46625 * 24.99883 * 12 11 10 29 29 H 1.08999 * 109.47026 * 144.99746 * 12 11 10 30 30 H 0.96995 * 120.00428 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 1.2940 2.3632 -0.0005 5 6 1.9248 3.6261 0.0000 6 6 1.3285 4.9523 0.0001 7 6 2.1918 5.9487 0.0012 8 16 3.8441 5.3636 0.0030 9 6 3.3209 3.6838 0.0003 10 6 4.0675 2.5018 -0.0006 11 6 3.4370 1.2807 -0.0011 12 6 4.2527 0.0134 -0.0014 13 6 4.4206 -0.4754 -1.4169 14 1 3.9804 0.0761 -2.2345 15 6 5.1353 -1.6274 -1.6682 16 7 5.6710 -2.2993 -0.6725 17 14 5.3441 -2.2331 -3.4229 18 1 6.5726 -1.6392 -4.0087 19 1 5.4604 -3.7135 -3.4249 20 1 4.1652 -1.8281 -4.2298 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 0.2157 2.3008 -0.0014 25 1 0.2600 5.1091 -0.0046 26 1 1.9159 6.9929 0.0010 27 1 5.1465 2.5487 -0.0008 28 1 5.2324 0.2119 0.4331 29 1 3.7414 -0.7478 0.5877 30 1 6.1742 -3.1095 -0.8493 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259317308.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:54 Heat of formation + Delta-G solvation = -1.195431 kcal Electronic energy + Delta-G solvation = -15256.784639 eV Core-core repulsion = 12722.535385 eV Total energy + Delta-G solvation = -2534.249254 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.79301 -37.53401 -34.94618 -32.83973 -30.52082 -29.60382 -27.34612 -26.35103 -23.61516 -22.42253 -21.22306 -20.08456 -17.42084 -16.78639 -16.29046 -16.00725 -15.20252 -14.72235 -14.21546 -14.12750 -13.30355 -13.22257 -13.14119 -12.54300 -12.30661 -11.84375 -11.42600 -11.38673 -11.12430 -10.91226 -10.59930 -10.49733 -10.28867 -10.12882 -9.56403 -9.36713 -9.03022 -8.37107 -7.55543 -7.19605 -5.98956 -4.01573 1.12616 1.78014 1.86627 2.30734 2.66261 3.33528 3.39387 3.43960 3.81009 4.19903 4.50306 4.83071 5.14913 5.33394 5.35920 5.43673 5.44711 5.58263 5.74729 5.77958 6.01231 6.07663 6.17157 6.48729 6.59348 6.78713 6.83718 7.18250 7.59365 7.75474 7.95129 7.98411 8.35490 9.01456 9.60766 11.11135 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.024318 B = 0.006821 C = 0.005832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.120440 B = 4103.850053 C = 4800.230042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.290 6.290 3 C 0.138 3.862 4 C -0.189 4.189 5 C -0.069 4.069 6 C -0.114 4.114 7 C -0.203 4.203 8 S 0.056 5.944 9 C -0.155 4.155 10 C -0.066 4.066 11 C -0.036 4.036 12 C 0.056 3.944 13 C -0.503 4.503 14 H 0.055 0.945 15 C 0.059 3.941 16 N -0.895 5.895 17 Si 0.894 3.106 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.274 1.274 21 H 0.048 0.952 22 H 0.050 0.950 23 H 0.096 0.904 24 H 0.124 0.876 25 H 0.137 0.863 26 H 0.160 0.840 27 H 0.131 0.869 28 H 0.030 0.970 29 H 0.039 0.961 30 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.213 11.903 2.297 15.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.202 6.202 3 C 0.091 3.909 4 C -0.210 4.210 5 C -0.076 4.076 6 C -0.145 4.145 7 C -0.336 4.336 8 S 0.318 5.682 9 C -0.270 4.270 10 C -0.089 4.089 11 C -0.039 4.039 12 C 0.019 3.981 13 C -0.542 4.542 14 H 0.073 0.927 15 C -0.142 4.142 16 N -0.534 5.534 17 Si 0.722 3.278 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.199 1.199 21 H 0.067 0.933 22 H 0.068 0.932 23 H 0.114 0.886 24 H 0.142 0.858 25 H 0.155 0.845 26 H 0.178 0.822 27 H 0.149 0.851 28 H 0.048 0.952 29 H 0.057 0.943 30 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.662 12.335 2.338 14.708 hybrid contribution -1.556 -0.833 -1.015 2.037 sum -9.218 11.502 1.323 14.799 Atomic orbital electron populations 1.22998 0.79995 1.03491 1.00495 1.86345 1.19749 1.26052 1.88087 1.18666 0.92140 0.83794 0.96323 1.20770 0.99084 0.90429 1.10702 1.18834 0.91506 0.92893 1.04332 1.20856 1.00103 0.90415 1.03167 1.24874 0.96309 1.02641 1.09786 1.83897 1.06610 0.97400 1.80291 1.22467 0.96339 0.96955 1.11238 1.20223 0.99409 0.88556 1.00684 1.20072 0.90813 0.97408 0.95627 1.18264 0.93771 0.87906 0.98150 1.20976 1.32968 1.08616 0.91621 0.92669 1.24962 0.95661 0.96485 0.97090 1.69951 1.35383 1.17336 1.30728 0.86556 0.78512 0.77859 0.84894 1.20634 1.21174 1.19894 0.93349 0.93177 0.88573 0.85792 0.84520 0.82216 0.85104 0.95192 0.94283 0.92907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 9.80 101.05 0.99 1.35 16 2 O -0.29 -5.85 9.62 -19.70 -0.19 -6.04 16 3 C 0.14 2.81 6.64 -39.46 -0.26 2.55 16 4 C -0.19 -3.28 9.09 -38.72 -0.35 -3.63 16 5 C -0.07 -1.18 6.04 -105.38 -0.64 -1.82 16 6 C -0.11 -1.58 10.39 -38.63 -0.40 -1.98 16 7 C -0.20 -2.59 11.02 28.84 0.32 -2.27 16 8 S 0.06 0.83 23.23 -107.50 -2.50 -1.67 16 9 C -0.16 -2.83 6.47 -38.44 -0.25 -3.08 16 10 C -0.07 -1.35 9.68 -39.29 -0.38 -1.73 16 11 C -0.04 -0.81 5.07 -104.54 -0.53 -1.34 16 12 C 0.06 1.47 4.82 -29.03 -0.14 1.33 16 13 C -0.50 -14.32 9.09 -34.44 -0.31 -14.63 16 14 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 15 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 16 N -0.89 -26.66 13.29 55.43 0.74 -25.92 16 17 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 18 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.27 -6.63 7.11 56.52 0.40 -6.22 16 21 H 0.05 0.57 7.65 -51.93 -0.40 0.17 16 22 H 0.05 0.63 7.64 -51.93 -0.40 0.23 16 23 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 24 H 0.12 1.76 6.22 -52.48 -0.33 1.44 16 25 H 0.14 1.49 8.06 -52.48 -0.42 1.07 16 26 H 0.16 1.51 8.06 -52.48 -0.42 1.08 16 27 H 0.13 2.54 8.06 -52.49 -0.42 2.12 16 28 H 0.03 0.81 8.04 -51.93 -0.42 0.39 16 29 H 0.04 1.09 7.68 -51.93 -0.40 0.69 16 30 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 276.18 15.07 4.16 4.16 Total: -1.00 -31.22 276.18 -8.03 -39.25 By element: Atomic # 1 Polarization: 0.21 SS G_CDS: -3.17 Total: -2.96 kcal Atomic # 6 Polarization: -21.61 SS G_CDS: -2.05 Total: -23.66 kcal Atomic # 7 Polarization: -26.66 SS G_CDS: 0.74 Total: -25.92 kcal Atomic # 8 Polarization: -5.85 SS G_CDS: -0.19 Total: -6.04 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Atomic # 16 Polarization: 0.83 SS G_CDS: -2.50 Total: -1.67 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -31.22 -8.03 -39.25 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259317308.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.059 kcal (2) G-P(sol) polarization free energy of solvation -31.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds