Wall clock time and date at job start Mon Mar 30 2020 05:46:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35987 * 116.99806 * 2 1 4 4 C 1.37550 * 119.84210 * 359.97438 * 3 2 1 5 5 C 1.41176 * 120.29915 * 179.97438 * 4 3 2 6 6 C 1.45406 * 129.25007 * 180.02562 * 5 4 3 7 7 C 1.31831 * 114.88761 * 179.97438 * 6 5 4 8 8 S 1.75288 * 111.40224 * 359.97438 * 7 6 5 9 9 C 1.39726 * 118.90588 * 0.03872 * 5 4 3 10 10 C 1.39806 * 119.91444 * 0.02562 * 9 5 4 11 11 C 1.37423 * 120.41261 * 359.97438 * 10 9 5 12 12 C 1.50708 * 119.92633 * 180.02562 * 11 10 9 13 13 C 1.50696 * 109.46845 * 264.99904 * 12 11 10 14 14 H 1.08000 * 120.00139 * 359.97438 * 13 12 11 15 15 C 1.37878 * 119.99769 * 180.02562 * 13 12 11 16 16 N 1.31516 * 120.00264 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99934 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47352 * 89.99660 * 17 15 13 19 19 H 1.48500 * 109.46755 * 209.99944 * 17 15 13 20 20 H 1.48497 * 109.47029 * 329.99172 * 17 15 13 21 21 H 1.08992 * 109.47462 * 300.00038 * 1 2 3 22 22 H 1.09001 * 109.46972 * 60.00212 * 1 2 3 23 23 H 1.09004 * 109.46980 * 180.02562 * 1 2 3 24 24 H 1.08007 * 119.84878 * 359.97296 * 4 3 2 25 25 H 1.08004 * 122.55734 * 359.72497 * 6 5 4 26 26 H 1.08004 * 124.29644 * 179.97438 * 7 6 5 27 27 H 1.08000 * 119.79096 * 179.97438 * 10 9 5 28 28 H 1.08996 * 109.46625 * 24.99883 * 12 11 10 29 29 H 1.08999 * 109.47026 * 144.99746 * 12 11 10 30 30 H 0.96995 * 120.00428 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 1.2940 2.3632 -0.0005 5 6 1.9248 3.6261 0.0000 6 6 1.3285 4.9523 0.0001 7 6 2.1918 5.9487 0.0012 8 16 3.8441 5.3636 0.0030 9 6 3.3209 3.6838 0.0003 10 6 4.0675 2.5018 -0.0006 11 6 3.4370 1.2807 -0.0011 12 6 4.2527 0.0134 -0.0014 13 6 4.4206 -0.4754 -1.4169 14 1 3.9804 0.0761 -2.2345 15 6 5.1353 -1.6274 -1.6682 16 7 5.6710 -2.2993 -0.6725 17 14 5.3441 -2.2331 -3.4229 18 1 6.5726 -1.6392 -4.0087 19 1 5.4604 -3.7135 -3.4249 20 1 4.1652 -1.8281 -4.2298 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 0.2157 2.3008 -0.0014 25 1 0.2600 5.1091 -0.0046 26 1 1.9159 6.9929 0.0010 27 1 5.1465 2.5487 -0.0008 28 1 5.2324 0.2119 0.4331 29 1 3.7414 -0.7478 0.5877 30 1 6.1742 -3.1095 -0.8493 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259317308.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:54 Heat of formation + Delta-G solvation = -19.541225 kcal Electronic energy + Delta-G solvation = -15257.580172 eV Core-core repulsion = 12722.535385 eV Total energy + Delta-G solvation = -2535.044787 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.20446 -38.85922 -36.46799 -34.79846 -32.15367 -31.04134 -28.87306 -27.79828 -25.39818 -23.85416 -22.73844 -21.39687 -18.81049 -18.44466 -18.06730 -17.37431 -16.61686 -16.53547 -15.67124 -15.31371 -14.72441 -14.62797 -14.57983 -14.22037 -13.73019 -13.49338 -13.24792 -12.73342 -12.65440 -12.53263 -12.40241 -12.12280 -11.69058 -11.59934 -11.42096 -11.17354 -10.58974 -10.35742 -9.05918 -8.46014 -8.17605 -6.30304 -0.16405 0.32656 0.65134 1.14896 1.37175 1.39883 1.43737 1.51554 2.39978 2.52244 2.77322 3.12429 3.67050 3.83327 4.17817 4.25232 4.33851 4.43856 4.56494 4.61105 4.72031 4.82470 4.95308 5.01669 5.13380 5.28712 5.34673 5.49754 5.63695 5.74994 5.86277 6.17778 6.61017 6.79552 7.36499 8.91636 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.024318 B = 0.006821 C = 0.005832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.120440 B = 4103.850053 C = 4800.230042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.330 6.330 3 C 0.122 3.878 4 C -0.179 4.179 5 C -0.067 4.067 6 C -0.125 4.125 7 C -0.178 4.178 8 S 0.067 5.933 9 C -0.185 4.185 10 C -0.071 4.071 11 C -0.079 4.079 12 C 0.070 3.930 13 C -0.519 4.519 14 H 0.048 0.952 15 C 0.005 3.995 16 N -0.930 5.930 17 Si 0.964 3.036 18 H -0.270 1.270 19 H -0.277 1.277 20 H -0.268 1.268 21 H 0.071 0.929 22 H 0.065 0.935 23 H 0.111 0.889 24 H 0.161 0.839 25 H 0.176 0.824 26 H 0.204 0.796 27 H 0.122 0.878 28 H 0.004 0.996 29 H 0.007 0.993 30 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.410 14.419 1.289 18.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.243 6.243 3 C 0.075 3.925 4 C -0.199 4.199 5 C -0.075 4.075 6 C -0.154 4.154 7 C -0.312 4.312 8 S 0.329 5.671 9 C -0.299 4.299 10 C -0.094 4.094 11 C -0.083 4.083 12 C 0.033 3.967 13 C -0.557 4.557 14 H 0.066 0.934 15 C -0.193 4.193 16 N -0.571 5.571 17 Si 0.788 3.212 18 H -0.196 1.196 19 H -0.202 1.202 20 H -0.193 1.193 21 H 0.090 0.910 22 H 0.084 0.916 23 H 0.129 0.871 24 H 0.178 0.822 25 H 0.193 0.807 26 H 0.221 0.779 27 H 0.140 0.860 28 H 0.022 0.978 29 H 0.025 0.975 30 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -9.867 14.861 1.335 17.888 hybrid contribution -0.926 -1.459 -0.642 1.843 sum -10.793 13.402 0.693 17.222 Atomic orbital electron populations 1.23352 0.76963 1.05239 1.02299 1.86279 1.23092 1.26617 1.88321 1.18707 0.91545 0.85045 0.97174 1.21063 1.00621 0.89379 1.08859 1.19403 0.91250 0.94584 1.02265 1.21109 1.02188 0.88331 1.03809 1.25422 0.94312 1.04597 1.06840 1.83914 1.08657 0.94660 1.79899 1.22685 0.97279 0.98126 1.11820 1.20139 0.99259 0.89217 1.00739 1.19769 0.92089 0.96287 1.00106 1.17879 0.92740 0.89441 0.96598 1.21249 1.33003 1.08978 0.92487 0.93352 1.25881 0.95140 0.96552 1.01684 1.70078 1.36050 1.17834 1.33094 0.85465 0.78787 0.77560 0.79361 1.19585 1.20234 1.19268 0.91045 0.91602 0.87099 0.82164 0.80711 0.77880 0.85976 0.97815 0.97508 0.92590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 9.80 113.37 1.11 1.53 16 2 O -0.33 -13.67 9.62 -93.40 -0.90 -14.56 16 3 C 0.12 5.12 6.64 22.35 0.15 5.27 16 4 C -0.18 -5.91 9.09 22.83 0.21 -5.70 16 5 C -0.07 -2.15 6.04 -20.35 -0.12 -2.27 16 6 C -0.12 -2.84 10.39 23.33 0.24 -2.59 16 7 C -0.18 -3.66 11.02 67.03 0.74 -2.92 16 8 S 0.07 1.83 23.23 -56.49 -1.31 0.51 16 9 C -0.18 -6.62 6.47 23.01 0.15 -6.47 16 10 C -0.07 -3.05 9.68 22.46 0.22 -2.83 16 11 C -0.08 -3.79 5.07 -19.81 -0.10 -3.89 16 12 C 0.07 4.00 4.82 29.10 0.14 4.14 16 13 C -0.52 -31.06 9.09 25.60 0.23 -30.83 16 14 H 0.05 2.88 7.74 -2.91 -0.02 2.86 16 15 C 0.01 0.31 5.46 84.65 0.46 0.77 16 16 N -0.93 -57.70 13.29 21.45 0.28 -57.41 16 17 Si 0.96 45.74 29.54 68.60 2.03 47.77 16 18 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 19 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 20 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 21 H 0.07 1.53 7.65 -2.39 -0.02 1.51 16 22 H 0.07 1.51 7.64 -2.39 -0.02 1.49 16 23 H 0.11 2.52 8.14 -2.39 -0.02 2.50 16 24 H 0.16 3.97 6.22 -2.91 -0.02 3.96 16 25 H 0.18 2.69 8.06 -2.91 -0.02 2.66 16 26 H 0.20 2.44 8.06 -2.91 -0.02 2.42 16 27 H 0.12 5.15 8.06 -2.91 -0.02 5.12 16 28 H 0.00 0.21 8.04 -2.39 -0.02 0.19 16 29 H 0.01 0.41 7.68 -2.39 -0.02 0.39 16 30 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 Total: -1.00 -71.74 276.18 4.67 -67.06 By element: Atomic # 1 Polarization: 1.29 SS G_CDS: 1.15 Total: 2.44 kcal Atomic # 6 Polarization: -49.23 SS G_CDS: 3.43 Total: -45.80 kcal Atomic # 7 Polarization: -57.70 SS G_CDS: 0.28 Total: -57.41 kcal Atomic # 8 Polarization: -13.67 SS G_CDS: -0.90 Total: -14.56 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal Atomic # 16 Polarization: 1.83 SS G_CDS: -1.31 Total: 0.51 kcal Total: -71.74 4.67 -67.06 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259317308.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.522 kcal (2) G-P(sol) polarization free energy of solvation -71.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds