Wall clock time and date at job start Mon Mar 30 2020 05:47:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99858 * 2 1 4 4 H 1.48500 * 109.46922 * 240.00274 * 3 2 1 5 5 H 1.48500 * 109.47191 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47083 * 120.00221 * 3 2 1 7 7 C 1.37875 * 119.99832 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99643 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00419 * 359.97438 * 7 2 1 10 10 C 1.50697 * 109.47417 * 180.02562 * 9 7 2 11 11 C 1.30871 * 121.79747 * 85.01659 * 10 9 7 12 12 S 1.75798 * 109.97753 * 180.02562 * 11 10 9 13 13 C 1.75975 * 90.73867 * 359.97438 * 12 11 10 14 14 C 1.36271 * 143.25060 * 180.02562 * 13 12 11 15 15 N 1.33761 * 107.82694 * 179.74983 * 14 13 12 16 16 C 1.30385 * 109.48549 * 0.37644 * 15 14 13 17 17 C 1.50702 * 125.56405 * 179.89052 * 16 15 14 18 18 C 1.53000 * 117.49604 * 299.68830 * 17 16 15 19 19 C 1.52997 * 117.49669 * 8.31270 * 17 16 15 20 20 N 1.36069 * 109.32114 * 0.02562 * 13 12 11 21 21 H 0.97002 * 120.00321 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.46646 * 60.00372 * 9 7 2 23 23 H 1.08998 * 109.47215 * 300.01042 * 9 7 2 24 24 H 1.07996 * 125.00806 * 359.96001 * 11 10 9 25 25 H 1.08001 * 126.08260 * 0.02562 * 14 13 12 26 26 H 1.09002 * 115.56044 * 153.99651 * 17 16 15 27 27 H 1.08990 * 117.49990 * 359.97438 * 18 17 16 28 28 H 1.09004 * 117.49237 * 214.97804 * 18 17 16 29 29 H 1.08999 * 117.49685 * 145.02383 * 19 17 16 30 30 H 1.08999 * 117.52022 * 359.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2303 -3.6446 -0.0005 11 6 2.7519 -4.1059 1.1076 12 16 3.8468 -5.4337 0.7488 13 6 3.5126 -5.2744 -0.9716 14 6 3.8148 -5.7926 -2.1952 15 7 3.1191 -5.1108 -3.1119 16 6 2.4070 -4.1915 -2.5222 17 6 1.4905 -3.2149 -3.2134 18 6 2.1134 -2.2669 -4.2400 19 6 1.2300 -3.4259 -4.7062 20 7 2.6246 -4.2619 -1.1659 21 1 -0.4851 0.8400 0.0004 22 1 0.6241 -2.5567 -0.8904 23 1 0.6246 -2.5571 0.8896 24 1 2.5415 -3.7262 2.0964 25 1 4.4919 -6.6113 -2.3896 26 1 0.6687 -2.8321 -2.6082 27 1 3.1860 -2.3491 -4.4152 28 1 1.7014 -1.2601 -4.3103 29 1 0.2369 -3.1816 -5.0831 30 1 1.7216 -4.2706 -5.1888 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259429654.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:28 Heat of formation + Delta-G solvation = 108.323143 kcal Electronic energy + Delta-G solvation = -15655.464815 eV Core-core repulsion = 13158.257394 eV Total energy + Delta-G solvation = -2497.207421 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.068 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.23720 -37.00731 -36.23148 -33.12820 -30.45756 -29.28097 -27.68510 -23.95015 -23.39744 -22.01747 -21.50497 -20.99697 -18.47631 -17.36464 -16.67811 -15.62313 -15.36284 -14.71568 -14.44730 -14.13184 -13.69614 -13.55814 -12.60460 -12.37357 -11.90899 -11.53351 -11.51364 -11.15500 -11.03927 -10.87022 -10.60369 -10.38780 -10.13867 -9.96137 -9.86083 -9.64880 -9.47103 -8.63837 -8.58489 -6.78734 -6.25082 -4.31911 1.53890 1.69116 2.25010 2.79443 3.10962 3.20694 3.25323 3.26781 3.30866 4.27765 4.35085 4.66352 5.09235 5.09475 5.19874 5.34993 5.44093 5.70701 5.85659 5.90297 5.98723 6.16260 6.24679 6.46934 6.51509 6.70589 6.79454 7.11138 7.23053 7.66674 7.67858 7.97220 8.24892 8.70154 9.33489 10.83270 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.018678 B = 0.009591 C = 0.007045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.762466 B = 2918.641115 C = 3973.349383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.067 3.933 3 Si 0.898 3.102 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.519 4.519 8 H 0.058 0.942 9 C 0.069 3.931 10 C 0.131 3.869 11 C -0.240 4.240 12 S 0.077 5.923 13 C -0.087 4.087 14 C 0.001 3.999 15 N -0.461 5.461 16 C 0.263 3.737 17 C -0.079 4.079 18 C -0.152 4.152 19 C -0.158 4.158 20 N -0.389 5.389 21 H 0.266 0.734 22 H 0.040 0.960 23 H 0.050 0.950 24 H 0.184 0.816 25 H 0.175 0.825 26 H 0.133 0.867 27 H 0.094 0.906 28 H 0.102 0.898 29 H 0.098 0.902 30 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.442 -7.099 -2.679 8.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.136 4.136 3 Si 0.725 3.275 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.557 4.557 8 H 0.076 0.924 9 C 0.029 3.971 10 C 0.023 3.977 11 C -0.375 4.375 12 S 0.332 5.668 13 C -0.312 4.312 14 C -0.157 4.157 15 N -0.177 5.177 16 C 0.001 3.999 17 C -0.098 4.098 18 C -0.191 4.191 19 C -0.196 4.196 20 N -0.067 5.067 21 H 0.076 0.924 22 H 0.058 0.942 23 H 0.068 0.932 24 H 0.201 0.799 25 H 0.192 0.808 26 H 0.150 0.850 27 H 0.112 0.888 28 H 0.120 0.880 29 H 0.116 0.884 30 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 4.058 -7.904 -2.625 9.264 hybrid contribution -0.271 1.917 0.333 1.965 sum 3.787 -5.987 -2.292 7.445 Atomic orbital electron populations 1.69918 1.05987 1.27457 1.49320 1.24929 0.94895 0.99257 0.94557 0.86544 0.79585 0.82394 0.78981 1.19961 1.20997 1.20010 1.20845 0.92978 0.89185 1.52680 0.92422 1.18399 0.91376 0.87488 0.99818 1.20220 0.99391 0.96187 0.81894 1.24484 1.06611 1.04087 1.02309 1.83991 1.51938 1.38350 0.92477 1.24496 1.04964 1.00823 1.00913 1.21567 1.05318 1.03979 0.84838 1.69982 1.09618 1.06764 1.31323 1.22451 1.01506 0.99020 0.76921 1.20276 0.99633 0.98473 0.91467 1.22943 0.99563 0.95296 1.01287 1.22981 1.01159 1.00984 0.94440 1.43929 1.31493 1.24208 1.07058 0.92401 0.94197 0.93215 0.79855 0.80824 0.84957 0.88761 0.87998 0.88409 0.87786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.28 13.29 55.43 0.74 -23.54 16 2 C 0.07 1.75 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 20.53 29.54 -169.99 -5.02 15.51 16 4 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.52 -13.56 9.09 -34.44 -0.31 -13.88 16 8 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 9 C 0.07 1.64 5.15 -29.04 -0.15 1.49 16 10 C 0.13 2.80 5.94 -81.67 -0.49 2.32 16 11 C -0.24 -4.51 10.80 29.05 0.31 -4.20 16 12 S 0.08 1.28 23.36 -107.50 -2.51 -1.23 16 13 C -0.09 -1.66 7.83 -16.38 -0.13 -1.79 16 14 C 0.00 0.02 11.93 -17.42 -0.21 -0.19 16 15 N -0.46 -8.96 10.76 -9.97 -0.11 -9.07 16 16 C 0.26 5.36 7.70 -153.17 -1.18 4.18 16 17 C -0.08 -1.46 5.93 -91.77 -0.54 -2.01 16 18 C -0.15 -2.52 10.23 -26.73 -0.27 -2.79 16 19 C -0.16 -2.36 10.13 -26.73 -0.27 -2.64 16 20 N -0.39 -8.22 3.19 -55.50 -0.18 -8.39 16 21 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 22 H 0.04 0.99 5.52 -51.93 -0.29 0.70 16 23 H 0.05 1.22 8.13 -51.93 -0.42 0.80 16 24 H 0.18 3.09 8.06 -52.49 -0.42 2.67 16 25 H 0.17 2.47 8.06 -52.49 -0.42 2.05 16 26 H 0.13 2.65 5.86 -51.93 -0.30 2.35 16 27 H 0.09 1.57 8.14 -51.93 -0.42 1.14 16 28 H 0.10 1.61 8.14 -51.93 -0.42 1.18 16 29 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 30 H 0.10 1.55 7.88 -51.93 -0.41 1.14 16 LS Contribution 275.63 15.07 4.15 4.15 Total: -1.00 -28.17 275.63 -9.34 -37.51 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: -3.08 Total: 2.90 kcal Atomic # 6 Polarization: -14.51 SS G_CDS: -3.34 Total: -17.84 kcal Atomic # 7 Polarization: -41.46 SS G_CDS: 0.45 Total: -41.00 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Atomic # 16 Polarization: 1.28 SS G_CDS: -2.51 Total: -1.23 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -28.17 -9.34 -37.51 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259429654.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.835 kcal (2) G-P(sol) polarization free energy of solvation -28.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds