Wall clock time and date at job start Mon Mar 30 2020 06:14:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35990 * 116.99821 * 2 1 4 4 C 1.38960 * 119.75926 * 359.97438 * 3 2 1 5 5 C 1.37910 * 120.14495 * 179.97438 * 4 3 2 6 6 C 1.39156 * 119.80442 * 0.02659 * 5 4 3 7 7 C 1.47872 * 133.92256 * 180.02562 * 6 5 4 8 8 C 1.40941 * 127.30946 * 359.95641 * 7 6 5 9 9 H 1.08000 * 119.99855 * 6.88984 * 8 7 6 10 10 C 1.39735 * 120.00045 * 186.88856 * 8 7 6 11 11 N 1.31031 * 119.99801 * 10.46089 * 10 8 7 12 12 Si 1.86797 * 120.00015 * 190.45379 * 10 8 7 13 13 H 1.48498 * 109.46866 * 93.99151 * 12 10 8 14 14 H 1.48496 * 109.47191 * 213.99228 * 12 10 8 15 15 H 1.48497 * 109.47352 * 333.99676 * 12 10 8 16 16 C 1.38693 * 105.38625 * 179.97438 * 7 6 5 17 17 O 1.33922 * 109.31539 * 359.97438 * 16 7 6 18 18 C 1.35047 * 111.55225 * 0.02562 * 17 16 7 19 19 C 1.38848 * 119.76067 * 179.72341 * 3 2 1 20 20 O 1.36032 * 120.05303 * 0.02562 * 19 3 2 21 21 C 1.42898 * 117.00347 * 90.00157 * 20 19 3 22 22 H 1.09001 * 109.47844 * 300.00482 * 1 2 3 23 23 H 1.09004 * 109.47175 * 60.00529 * 1 2 3 24 24 H 1.09004 * 109.46961 * 180.02562 * 1 2 3 25 25 H 1.07998 * 119.92670 * 359.97438 * 4 3 2 26 26 H 1.08004 * 120.09850 * 180.02562 * 5 4 3 27 27 H 0.97005 * 119.99574 * 179.97438 * 11 10 8 28 28 H 1.07998 * 125.34165 * 180.02562 * 16 7 6 29 29 H 1.09007 * 109.46777 * 299.99824 * 21 20 19 30 30 H 1.08989 * 109.47253 * 59.99796 * 21 20 19 31 31 H 1.09004 * 109.47158 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 1.2845 2.3739 -0.0005 5 6 1.9023 3.6069 0.0000 6 6 3.2917 3.6844 0.0005 7 6 4.2566 4.8049 0.0016 8 6 3.9645 6.1837 0.0016 9 1 2.9441 6.5196 0.1130 10 6 4.9952 7.1163 -0.1424 11 7 6.1966 6.7177 -0.4809 12 14 4.6601 8.9309 0.1475 13 1 4.9929 9.2774 1.5526 14 1 5.4961 9.7420 -0.7737 15 1 3.2250 9.2160 -0.1060 16 6 5.5100 4.2112 0.0022 17 8 5.3694 2.8794 0.0021 18 6 4.0682 2.5180 0.0010 19 6 3.4332 1.2786 0.0058 20 8 4.1703 0.1354 0.0110 21 6 4.5274 -0.4121 -1.2598 22 1 -0.3635 0.5139 0.8899 23 1 -0.3634 0.5138 -0.8901 24 1 -0.3633 -1.0277 0.0005 25 1 0.2064 2.3114 -0.0014 26 1 1.3095 4.5097 0.0000 27 1 6.9120 7.3652 -0.5812 28 1 6.4517 4.7400 0.0034 29 1 3.6231 -0.6493 -1.8202 30 1 5.1190 0.3153 -1.8155 31 1 5.1121 -1.3203 -1.1128 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259437644.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:41 Heat of formation + Delta-G solvation = -54.896709 kcal Electronic energy + Delta-G solvation = -17750.672358 eV Core-core repulsion = 14771.341570 eV Total energy + Delta-G solvation = -2979.330787 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.088 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.88371 -39.19620 -37.41832 -35.46290 -33.98706 -30.66340 -29.35916 -28.10699 -26.85463 -26.05359 -25.32427 -22.14929 -21.04353 -20.04513 -17.96546 -16.93563 -16.75204 -15.99138 -15.69423 -15.05319 -14.88283 -14.74859 -14.29355 -14.14194 -14.03779 -13.01718 -12.57240 -12.49443 -11.80553 -11.73758 -11.47415 -11.43894 -11.35714 -11.09677 -10.53772 -10.41559 -10.14918 -9.82217 -9.56469 -9.43896 -8.29722 -7.66422 -6.81286 -6.76194 -4.30918 1.72842 2.15874 2.97017 3.07935 3.11485 3.38534 3.79545 3.93569 4.17839 4.49113 4.62271 5.20893 5.29850 5.31074 5.46784 5.55802 5.64212 5.73210 5.79863 5.92273 5.97460 6.01736 6.33590 6.73883 6.84091 7.01213 7.08237 7.21695 7.52252 7.61260 7.85820 8.12472 8.34019 8.57779 8.84379 9.01895 10.26066 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.033864 B = 0.006462 C = 0.005515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.643801 B = 4331.915475 C = 5075.804664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.312 6.312 3 C 0.116 3.884 4 C -0.242 4.242 5 C -0.026 4.026 6 C -0.159 4.159 7 C 0.014 3.986 8 C -0.421 4.421 9 H 0.076 0.924 10 C 0.059 3.941 11 N -0.820 5.820 12 Si 0.922 3.078 13 H -0.270 1.270 14 H -0.278 1.278 15 H -0.264 1.264 16 C -0.167 4.167 17 O -0.193 6.193 18 C 0.067 3.933 19 C 0.042 3.958 20 O -0.321 6.321 21 C 0.035 3.965 22 H 0.052 0.948 23 H 0.051 0.949 24 H 0.093 0.907 25 H 0.125 0.875 26 H 0.123 0.877 27 H 0.280 0.720 28 H 0.219 0.781 29 H 0.040 0.960 30 H 0.042 0.958 31 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.167 -6.761 -0.931 9.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.225 6.225 3 C 0.071 3.929 4 C -0.262 4.262 5 C -0.044 4.044 6 C -0.161 4.161 7 C 0.011 3.989 8 C -0.452 4.452 9 H 0.095 0.905 10 C -0.153 4.153 11 N -0.449 5.449 12 Si 0.747 3.253 13 H -0.196 1.196 14 H -0.203 1.203 15 H -0.188 1.188 16 C -0.233 4.233 17 O -0.094 6.094 18 C 0.015 3.985 19 C -0.003 4.003 20 O -0.237 6.237 21 C -0.060 4.060 22 H 0.071 0.929 23 H 0.070 0.930 24 H 0.111 0.889 25 H 0.143 0.857 26 H 0.141 0.859 27 H 0.091 0.909 28 H 0.235 0.765 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -6.576 -7.110 -0.835 9.721 hybrid contribution -0.473 1.258 -0.172 1.355 sum -7.048 -5.852 -1.007 9.216 Atomic orbital electron populations 1.22966 0.79280 1.03075 1.01175 1.86055 1.20456 1.26658 1.89374 1.18522 0.89984 0.84363 0.99991 1.20720 0.99000 0.91547 1.14887 1.20261 0.92775 0.96471 0.94918 1.20101 0.93568 0.94046 1.08367 1.18710 0.88858 0.91963 0.99342 1.18715 0.94767 0.88908 1.42772 0.90532 1.25745 0.94589 1.01616 0.93372 1.69490 1.02215 1.36665 1.36514 0.86063 0.79316 0.81036 0.78888 1.19576 1.20346 1.18826 1.25202 1.00846 0.75616 1.21592 1.83740 1.22715 1.27180 1.75727 1.19452 0.84343 0.92993 1.01706 1.16317 0.85998 0.82697 1.15255 1.86104 1.70786 1.38423 1.28391 1.22916 0.99137 0.98109 0.85817 0.92895 0.93010 0.88858 0.85684 0.85920 0.90880 0.76479 0.94170 0.93946 0.89710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 9.80 101.05 0.99 1.35 16 2 O -0.31 -5.35 10.26 -34.73 -0.36 -5.71 16 3 C 0.12 2.30 6.69 -39.09 -0.26 2.04 16 4 C -0.24 -4.43 9.02 -39.43 -0.36 -4.79 16 5 C -0.03 -0.54 10.08 -39.36 -0.40 -0.94 16 6 C -0.16 -3.94 6.35 -104.91 -0.67 -4.61 16 7 C 0.01 0.37 6.10 -104.76 -0.64 -0.27 16 8 C -0.42 -11.14 9.42 -38.00 -0.36 -11.50 16 9 H 0.08 1.92 7.86 -52.49 -0.41 1.51 16 10 C 0.06 1.49 5.45 -17.33 -0.09 1.39 16 11 N -0.82 -21.01 10.61 55.54 0.59 -20.42 16 12 Si 0.92 18.79 29.57 -169.99 -5.03 13.77 16 13 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 14 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 15 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 16 C -0.17 -4.54 11.04 30.90 0.34 -4.19 16 17 O -0.19 -5.09 10.52 4.63 0.05 -5.04 16 18 C 0.07 1.66 7.29 -38.50 -0.28 1.38 16 19 C 0.04 0.95 5.75 -38.98 -0.22 0.72 16 20 O -0.32 -6.82 10.19 -35.05 -0.36 -7.17 16 21 C 0.04 0.59 11.13 101.05 1.13 1.71 16 22 H 0.05 0.57 7.65 -51.93 -0.40 0.17 16 23 H 0.05 0.55 7.65 -51.93 -0.40 0.15 16 24 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.13 1.81 6.26 -52.49 -0.33 1.48 16 26 H 0.12 2.29 8.06 -52.48 -0.42 1.87 16 27 H 0.28 6.54 8.30 -40.82 -0.34 6.20 16 28 H 0.22 5.89 5.98 -52.49 -0.31 5.57 16 29 H 0.04 0.62 8.14 -51.92 -0.42 0.20 16 30 H 0.04 0.73 8.14 -51.94 -0.42 0.30 16 31 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 274.93 15.07 4.14 4.14 Total: -1.00 -29.78 274.93 -4.88 -34.65 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -3.10 Total: 3.48 kcal Atomic # 6 Polarization: -16.88 SS G_CDS: -0.82 Total: -17.70 kcal Atomic # 7 Polarization: -21.01 SS G_CDS: 0.59 Total: -20.42 kcal Atomic # 8 Polarization: -17.26 SS G_CDS: -0.66 Total: -17.92 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -5.03 Total: 13.77 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -29.78 -4.88 -34.65 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259437644.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.243 kcal (2) G-P(sol) polarization free energy of solvation -29.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds