Wall clock time and date at job start Mon Mar 30 2020 06:14:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35990 * 116.99821 * 2 1 4 4 C 1.38960 * 119.75926 * 359.97438 * 3 2 1 5 5 C 1.37910 * 120.14495 * 179.97438 * 4 3 2 6 6 C 1.39156 * 119.80442 * 0.02659 * 5 4 3 7 7 C 1.47872 * 133.92256 * 180.02562 * 6 5 4 8 8 C 1.40941 * 127.30946 * 359.95641 * 7 6 5 9 9 H 1.08000 * 119.99855 * 6.88984 * 8 7 6 10 10 C 1.39735 * 120.00045 * 186.88856 * 8 7 6 11 11 N 1.31031 * 119.99801 * 10.46089 * 10 8 7 12 12 Si 1.86797 * 120.00015 * 190.45379 * 10 8 7 13 13 H 1.48498 * 109.46866 * 93.99151 * 12 10 8 14 14 H 1.48496 * 109.47191 * 213.99228 * 12 10 8 15 15 H 1.48497 * 109.47352 * 333.99676 * 12 10 8 16 16 C 1.38693 * 105.38625 * 179.97438 * 7 6 5 17 17 O 1.33922 * 109.31539 * 359.97438 * 16 7 6 18 18 C 1.35047 * 111.55225 * 0.02562 * 17 16 7 19 19 C 1.38848 * 119.76067 * 179.72341 * 3 2 1 20 20 O 1.36032 * 120.05303 * 0.02562 * 19 3 2 21 21 C 1.42898 * 117.00347 * 90.00157 * 20 19 3 22 22 H 1.09001 * 109.47844 * 300.00482 * 1 2 3 23 23 H 1.09004 * 109.47175 * 60.00529 * 1 2 3 24 24 H 1.09004 * 109.46961 * 180.02562 * 1 2 3 25 25 H 1.07998 * 119.92670 * 359.97438 * 4 3 2 26 26 H 1.08004 * 120.09850 * 180.02562 * 5 4 3 27 27 H 0.97005 * 119.99574 * 179.97438 * 11 10 8 28 28 H 1.07998 * 125.34165 * 180.02562 * 16 7 6 29 29 H 1.09007 * 109.46777 * 299.99824 * 21 20 19 30 30 H 1.08989 * 109.47253 * 59.99796 * 21 20 19 31 31 H 1.09004 * 109.47158 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 1.2845 2.3739 -0.0005 5 6 1.9023 3.6069 0.0000 6 6 3.2917 3.6844 0.0005 7 6 4.2566 4.8049 0.0016 8 6 3.9645 6.1837 0.0016 9 1 2.9441 6.5196 0.1130 10 6 4.9952 7.1163 -0.1424 11 7 6.1966 6.7177 -0.4809 12 14 4.6601 8.9309 0.1475 13 1 4.9929 9.2774 1.5526 14 1 5.4961 9.7420 -0.7737 15 1 3.2250 9.2160 -0.1060 16 6 5.5100 4.2112 0.0022 17 8 5.3694 2.8794 0.0021 18 6 4.0682 2.5180 0.0010 19 6 3.4332 1.2786 0.0058 20 8 4.1703 0.1354 0.0110 21 6 4.5274 -0.4121 -1.2598 22 1 -0.3635 0.5139 0.8899 23 1 -0.3634 0.5138 -0.8901 24 1 -0.3633 -1.0277 0.0005 25 1 0.2064 2.3114 -0.0014 26 1 1.3095 4.5097 0.0000 27 1 6.9120 7.3652 -0.5812 28 1 6.4517 4.7400 0.0034 29 1 3.6231 -0.6493 -1.8202 30 1 5.1190 0.3153 -1.8155 31 1 5.1121 -1.3203 -1.1128 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259437644.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:41 Heat of formation + Delta-G solvation = -73.560101 kcal Electronic energy + Delta-G solvation = -17751.481663 eV Core-core repulsion = 14771.341570 eV Total energy + Delta-G solvation = -2980.140093 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.088 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.67658 -40.70974 -38.91686 -37.08367 -35.89169 -32.48432 -30.95992 -29.68603 -28.15211 -27.55148 -27.13046 -23.82840 -22.67712 -21.90589 -19.64805 -18.55895 -18.30687 -17.78686 -17.17894 -16.71114 -16.50686 -16.25951 -15.84802 -15.78533 -15.53021 -14.63262 -14.21362 -13.99097 -13.37990 -13.18445 -13.07264 -13.02824 -12.79413 -12.62235 -12.03182 -11.91257 -11.79731 -11.70118 -11.33794 -11.01680 -10.08524 -9.37948 -8.63814 -8.59165 -6.31517 0.06486 0.48226 1.33222 1.41480 1.56046 1.92598 1.96485 2.23441 2.53095 2.89961 2.96438 3.35967 3.92241 4.09576 4.20375 4.26644 4.45304 4.46985 4.48160 4.49671 4.57745 4.73557 4.79100 5.01561 5.14876 5.29938 5.37111 5.45542 5.74740 5.87387 6.15838 6.34710 6.55567 6.71867 6.87596 7.09359 8.40204 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.033864 B = 0.006462 C = 0.005515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.643801 B = 4331.915475 C = 5075.804664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.322 6.322 3 C 0.133 3.867 4 C -0.218 4.218 5 C -0.030 4.030 6 C -0.190 4.190 7 C -0.007 4.007 8 C -0.453 4.453 9 H 0.085 0.915 10 C 0.016 3.984 11 N -0.846 5.846 12 Si 1.000 3.000 13 H -0.265 1.265 14 H -0.270 1.270 15 H -0.254 1.254 16 C -0.207 4.207 17 O -0.215 6.215 18 C 0.043 3.957 19 C 0.020 3.980 20 O -0.340 6.340 21 C 0.032 3.968 22 H 0.067 0.933 23 H 0.069 0.931 24 H 0.124 0.876 25 H 0.176 0.824 26 H 0.145 0.855 27 H 0.288 0.712 28 H 0.207 0.793 29 H 0.054 0.946 30 H 0.028 0.972 31 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.212 -7.006 -0.974 12.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.235 6.235 3 C 0.086 3.914 4 C -0.237 4.237 5 C -0.048 4.048 6 C -0.192 4.192 7 C -0.009 4.009 8 C -0.483 4.483 9 H 0.103 0.897 10 C -0.194 4.194 11 N -0.476 5.476 12 Si 0.820 3.180 13 H -0.190 1.190 14 H -0.194 1.194 15 H -0.178 1.178 16 C -0.272 4.272 17 O -0.118 6.118 18 C -0.007 4.007 19 C -0.025 4.025 20 O -0.256 6.256 21 C -0.062 4.062 22 H 0.086 0.914 23 H 0.087 0.913 24 H 0.142 0.858 25 H 0.193 0.807 26 H 0.162 0.838 27 H 0.099 0.901 28 H 0.223 0.777 29 H 0.072 0.928 30 H 0.047 0.953 31 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -9.638 -7.394 -0.887 12.180 hybrid contribution 0.313 1.095 -0.188 1.154 sum -9.325 -6.299 -1.075 11.305 Atomic orbital electron populations 1.23456 0.75917 1.05833 1.02672 1.86072 1.23764 1.25120 1.88578 1.18606 0.89205 0.85986 0.97556 1.21190 1.01239 0.89743 1.11479 1.20588 0.91209 0.98604 0.94412 1.20357 0.95327 0.93081 1.10435 1.19152 0.89717 0.93171 0.98889 1.19078 0.95731 0.89231 1.44288 0.89735 1.26793 0.93984 1.06478 0.92176 1.69586 1.03198 1.38570 1.36196 0.84909 0.79637 0.74571 0.78873 1.19034 1.19435 1.17792 1.24982 1.00891 0.76278 1.25053 1.83651 1.24113 1.26779 1.77250 1.19990 0.83809 0.94463 1.02454 1.16610 0.87406 0.82228 1.16224 1.86043 1.71014 1.37876 1.30714 1.23140 1.00034 0.98699 0.84369 0.91424 0.91271 0.85787 0.80719 0.83763 0.90083 0.77709 0.92765 0.95349 0.86408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.80 113.37 1.11 1.39 16 2 O -0.32 -9.88 10.26 -79.08 -0.81 -10.70 16 3 C 0.13 4.92 6.69 22.59 0.15 5.07 16 4 C -0.22 -7.21 9.02 22.37 0.20 -7.01 16 5 C -0.03 -1.21 10.08 22.41 0.23 -0.98 16 6 C -0.19 -9.69 6.35 -20.05 -0.13 -9.82 16 7 C -0.01 -0.39 6.10 -19.96 -0.12 -0.51 16 8 C -0.45 -24.65 9.42 23.29 0.22 -24.43 16 9 H 0.08 4.28 7.86 -2.91 -0.02 4.26 16 10 C 0.02 0.81 5.45 85.17 0.46 1.28 16 11 N -0.85 -44.98 10.61 21.80 0.23 -44.75 16 12 Si 1.00 38.36 29.57 68.60 2.03 40.39 16 13 H -0.27 -9.92 7.11 99.48 0.71 -9.21 16 14 H -0.27 -9.89 7.11 99.48 0.71 -9.18 16 15 H -0.25 -9.29 7.11 99.48 0.71 -8.58 16 16 C -0.21 -12.10 11.04 67.93 0.75 -11.35 16 17 O -0.22 -12.21 10.52 -6.34 -0.07 -12.28 16 18 C 0.04 2.24 7.29 22.97 0.17 2.40 16 19 C 0.02 0.92 5.75 22.66 0.13 1.05 16 20 O -0.34 -14.45 10.19 -79.37 -0.81 -15.26 16 21 C 0.03 1.04 11.13 113.37 1.26 2.31 16 22 H 0.07 1.08 7.65 -2.39 -0.02 1.06 16 23 H 0.07 1.06 7.65 -2.38 -0.02 1.04 16 24 H 0.12 1.54 8.14 -2.39 -0.02 1.52 16 25 H 0.18 4.01 6.26 -2.91 -0.02 3.99 16 26 H 0.14 5.06 8.06 -2.91 -0.02 5.04 16 27 H 0.29 13.81 8.30 -92.70 -0.77 13.04 16 28 H 0.21 12.11 5.98 -2.91 -0.02 12.09 16 29 H 0.05 1.60 8.14 -2.38 -0.02 1.59 16 30 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.12 3.02 8.14 -2.38 -0.02 3.00 16 Total: -1.00 -68.75 274.93 6.16 -62.59 By element: Atomic # 1 Polarization: 19.46 SS G_CDS: 1.16 Total: 20.61 kcal Atomic # 6 Polarization: -45.05 SS G_CDS: 4.44 Total: -40.61 kcal Atomic # 7 Polarization: -44.98 SS G_CDS: 0.23 Total: -44.75 kcal Atomic # 8 Polarization: -36.55 SS G_CDS: -1.69 Total: -38.24 kcal Atomic # 14 Polarization: 38.36 SS G_CDS: 2.03 Total: 40.39 kcal Total: -68.75 6.16 -62.59 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259437644.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.970 kcal (2) G-P(sol) polarization free energy of solvation -68.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds