Wall clock time and date at job start Mon Mar 30 2020 06:02:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31379 * 122.05817 * 2 1 4 4 C 1.30471 * 116.95982 * 179.97438 * 3 2 1 5 5 C 1.47186 * 125.48073 * 179.97438 * 4 3 2 6 6 C 1.36536 * 126.09838 * 0.02562 * 5 4 3 7 7 C 1.40286 * 107.31900 * 179.97438 * 6 5 4 8 8 C 1.35147 * 107.74771 * 359.97438 * 7 6 5 9 9 N 1.36243 * 108.54723 * 359.77388 * 8 7 6 10 10 H 0.96998 * 125.71424 * 180.27176 * 9 8 7 11 11 S 1.76179 * 109.03239 * 0.23166 * 4 3 2 12 12 C 1.33649 * 122.06699 * 179.97438 * 2 1 3 13 13 C 1.50700 * 125.86014 * 0.04546 * 12 2 1 14 14 C 1.50704 * 109.46813 * 90.00810 * 13 12 2 15 15 H 1.07998 * 119.99826 * 359.97438 * 14 13 12 16 16 C 1.37873 * 120.00086 * 180.02562 * 14 13 12 17 17 N 1.31512 * 120.00082 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 119.99963 * 179.97438 * 16 14 13 19 19 H 1.48490 * 109.47314 * 359.97438 * 18 16 14 20 20 H 1.48504 * 109.46772 * 120.00016 * 18 16 14 21 21 H 1.48497 * 109.46938 * 239.99524 * 18 16 14 22 22 H 1.08997 * 109.47160 * 90.02459 * 1 2 3 23 23 H 1.09002 * 109.46954 * 210.01878 * 1 2 3 24 24 H 1.08994 * 109.47433 * 330.02017 * 1 2 3 25 25 H 1.08001 * 126.33923 * 359.94169 * 6 5 4 26 26 H 1.08003 * 126.12396 * 180.02562 * 7 6 5 27 27 H 1.07997 * 125.72354 * 180.02562 * 8 7 6 28 28 H 1.08996 * 109.47470 * 210.00245 * 13 12 2 29 29 H 1.09000 * 109.47746 * 330.01328 * 13 12 2 30 30 H 0.97003 * 120.00525 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2043 1.1135 0.0000 4 6 3.5039 0.9975 0.0005 5 6 4.4613 2.1154 0.0001 6 6 4.1467 3.4440 -0.0004 7 6 5.3537 4.1590 -0.0001 8 6 6.3641 3.2615 0.0012 9 7 5.8304 2.0080 0.0067 10 1 6.3332 1.1785 0.0125 11 16 3.9281 -0.7124 -0.0056 12 6 2.2165 -1.1326 0.0005 13 6 1.6502 -2.5291 0.0002 14 6 1.4626 -2.9947 -1.4208 15 1 1.7267 -2.3442 -2.2415 16 6 0.9530 -4.2507 -1.6732 17 7 0.6310 -5.0426 -0.6738 18 14 0.7198 -4.8274 -3.4346 19 1 1.1541 -3.7570 -4.3676 20 1 1.5331 -6.0479 -3.6675 21 1 -0.7138 -5.1359 -3.6687 22 1 -0.3633 -0.0004 -1.0276 23 1 -0.3633 -0.8898 0.5141 24 1 -0.3634 0.8901 0.5135 25 1 3.1527 3.8663 -0.0015 26 1 5.4569 5.2341 0.0000 27 1 7.4178 3.4983 0.0021 28 1 2.3380 -3.2003 0.5145 29 1 0.6885 -2.5314 0.5131 30 1 0.2727 -5.9264 -0.8513 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259451234.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:22 Heat of formation + Delta-G solvation = 73.388231 kcal Electronic energy + Delta-G solvation = -14827.475862 eV Core-core repulsion = 12328.753550 eV Total energy + Delta-G solvation = -2498.722313 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.068 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.93901 -38.99808 -33.84402 -32.00436 -30.97580 -29.53757 -28.54453 -25.72035 -24.01144 -22.45266 -20.70045 -20.26098 -18.62075 -17.40717 -16.65852 -16.47457 -14.73044 -14.62607 -14.27708 -13.75008 -13.64390 -13.15493 -12.74007 -12.42209 -12.21952 -12.18014 -11.94051 -11.87798 -11.32129 -10.94007 -10.84873 -10.36536 -10.05449 -9.71465 -9.13692 -8.90958 -8.73691 -8.57696 -8.54719 -7.28696 -6.17560 -4.23298 0.98687 1.80627 2.31717 2.41163 3.01818 3.11766 3.22326 3.30477 3.35724 3.64317 4.33894 4.56161 5.10811 5.17464 5.43204 5.46239 5.64952 5.91346 6.04418 6.23814 6.27091 6.31620 6.43127 6.47990 6.86233 6.99544 7.06421 7.30563 7.35868 7.47902 7.76355 8.09550 8.30383 8.80241 9.41617 10.91475 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.037365 B = 0.005369 C = 0.005120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.177017 B = 5214.320512 C = 5467.261664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.021 3.979 3 N -0.440 5.440 4 C 0.092 3.908 5 C 0.087 3.913 6 C -0.142 4.142 7 C -0.205 4.205 8 C 0.001 3.999 9 N -0.553 5.553 10 H 0.415 0.585 11 S 0.037 5.963 12 C -0.117 4.117 13 C 0.083 3.917 14 C -0.515 4.515 15 H 0.059 0.941 16 C 0.063 3.937 17 N -0.891 5.891 18 Si 0.898 3.102 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.281 1.281 22 H 0.070 0.930 23 H 0.078 0.922 24 H 0.061 0.939 25 H 0.143 0.857 26 H 0.139 0.861 27 H 0.168 0.832 28 H 0.033 0.967 29 H 0.051 0.949 30 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.402 12.425 2.169 15.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.108 4.108 3 N -0.155 5.155 4 C -0.183 4.183 5 C -0.028 4.028 6 C -0.170 4.170 7 C -0.230 4.230 8 C -0.132 4.132 9 N -0.149 5.149 10 H 0.251 0.749 11 S 0.293 5.707 12 C -0.238 4.238 13 C 0.044 3.956 14 C -0.553 4.553 15 H 0.077 0.923 16 C -0.140 4.140 17 N -0.530 5.530 18 Si 0.725 3.275 19 H -0.196 1.196 20 H -0.208 1.208 21 H -0.207 1.207 22 H 0.089 0.911 23 H 0.097 0.903 24 H 0.080 0.920 25 H 0.161 0.839 26 H 0.157 0.843 27 H 0.185 0.815 28 H 0.051 0.949 29 H 0.068 0.932 30 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 9.100 12.008 2.211 15.228 hybrid contribution -0.625 -0.887 -0.988 1.467 sum 8.476 11.121 1.223 14.036 Atomic orbital electron populations 1.20241 0.87117 1.02302 1.02731 1.19910 0.98211 0.85676 1.07044 1.66268 1.03500 1.31370 1.14346 1.24160 0.92033 0.92820 1.09281 1.17332 0.81061 0.91995 1.12448 1.20977 0.98984 0.90479 1.06598 1.20854 0.91939 0.99031 1.11134 1.21887 0.99021 0.82855 1.09463 1.41995 1.05464 1.08594 1.58889 0.74855 1.84618 1.11218 1.02995 1.71858 1.26491 0.91678 1.03151 1.02470 1.18001 0.96353 0.82725 0.98553 1.21022 1.43472 1.00031 0.90818 0.92299 1.24977 0.95056 0.96406 0.97536 1.69946 1.43174 1.09061 1.30769 0.86433 0.77987 0.78735 0.84355 1.19607 1.20812 1.20693 0.91084 0.90342 0.92022 0.83909 0.84330 0.81501 0.94860 0.93167 0.92620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.18 10.02 36.01 0.36 -0.82 16 2 C 0.02 0.45 6.69 -84.39 -0.56 -0.12 16 3 N -0.44 -8.90 10.50 -7.70 -0.08 -8.98 16 4 C 0.09 1.71 7.46 -14.50 -0.11 1.61 16 5 C 0.09 1.37 7.08 -82.38 -0.58 0.78 16 6 C -0.14 -2.08 10.76 -39.43 -0.42 -2.50 16 7 C -0.20 -2.40 10.83 -39.91 -0.43 -2.84 16 8 C 0.00 0.01 11.92 -16.69 -0.20 -0.19 16 9 N -0.55 -6.82 6.12 -9.53 -0.06 -6.88 16 10 H 0.41 4.26 8.96 -40.82 -0.37 3.89 16 11 S 0.04 0.70 23.42 -107.50 -2.52 -1.82 16 12 C -0.12 -2.59 5.76 -35.92 -0.21 -2.80 16 13 C 0.08 2.07 5.16 -29.03 -0.15 1.92 16 14 C -0.51 -13.98 9.09 -34.44 -0.31 -14.30 16 15 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 16 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 17 N -0.89 -25.33 13.29 55.43 0.74 -24.60 16 18 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 16 19 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 22 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 23 H 0.08 1.45 6.62 -51.93 -0.34 1.10 16 24 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 25 H 0.14 2.07 8.06 -52.49 -0.42 1.65 16 26 H 0.14 1.28 8.06 -52.48 -0.42 0.86 16 27 H 0.17 1.10 8.06 -52.49 -0.42 0.67 16 28 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.05 1.29 6.67 -51.93 -0.35 0.94 16 30 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 281.34 15.07 4.24 4.24 Total: -1.00 -30.30 281.34 -8.55 -38.85 By element: Atomic # 1 Polarization: 3.92 SS G_CDS: -3.13 Total: 0.78 kcal Atomic # 6 Polarization: -14.91 SS G_CDS: -2.72 Total: -17.63 kcal Atomic # 7 Polarization: -41.05 SS G_CDS: 0.60 Total: -40.46 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 16 Polarization: 0.70 SS G_CDS: -2.52 Total: -1.82 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -30.30 -8.55 -38.85 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259451234.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.238 kcal (2) G-P(sol) polarization free energy of solvation -30.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.850 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds