Wall clock time and date at job start Mon Mar 30 2020 06:02:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31379 * 122.05817 * 2 1 4 4 C 1.30471 * 116.95982 * 179.97438 * 3 2 1 5 5 C 1.47186 * 125.48073 * 179.97438 * 4 3 2 6 6 C 1.36536 * 126.09838 * 0.02562 * 5 4 3 7 7 C 1.40286 * 107.31900 * 179.97438 * 6 5 4 8 8 C 1.35147 * 107.74771 * 359.97438 * 7 6 5 9 9 N 1.36243 * 108.54723 * 359.77388 * 8 7 6 10 10 H 0.96998 * 125.71424 * 180.27176 * 9 8 7 11 11 S 1.76179 * 109.03239 * 0.23166 * 4 3 2 12 12 C 1.33649 * 122.06699 * 179.97438 * 2 1 3 13 13 C 1.50700 * 125.86014 * 0.04546 * 12 2 1 14 14 C 1.50704 * 109.46813 * 90.00810 * 13 12 2 15 15 H 1.07998 * 119.99826 * 359.97438 * 14 13 12 16 16 C 1.37873 * 120.00086 * 180.02562 * 14 13 12 17 17 N 1.31512 * 120.00082 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 119.99963 * 179.97438 * 16 14 13 19 19 H 1.48490 * 109.47314 * 359.97438 * 18 16 14 20 20 H 1.48504 * 109.46772 * 120.00016 * 18 16 14 21 21 H 1.48497 * 109.46938 * 239.99524 * 18 16 14 22 22 H 1.08997 * 109.47160 * 90.02459 * 1 2 3 23 23 H 1.09002 * 109.46954 * 210.01878 * 1 2 3 24 24 H 1.08994 * 109.47433 * 330.02017 * 1 2 3 25 25 H 1.08001 * 126.33923 * 359.94169 * 6 5 4 26 26 H 1.08003 * 126.12396 * 180.02562 * 7 6 5 27 27 H 1.07997 * 125.72354 * 180.02562 * 8 7 6 28 28 H 1.08996 * 109.47470 * 210.00245 * 13 12 2 29 29 H 1.09000 * 109.47746 * 330.01328 * 13 12 2 30 30 H 0.97003 * 120.00525 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2043 1.1135 0.0000 4 6 3.5039 0.9975 0.0005 5 6 4.4613 2.1154 0.0001 6 6 4.1467 3.4440 -0.0004 7 6 5.3537 4.1590 -0.0001 8 6 6.3641 3.2615 0.0012 9 7 5.8304 2.0080 0.0067 10 1 6.3332 1.1785 0.0125 11 16 3.9281 -0.7124 -0.0056 12 6 2.2165 -1.1326 0.0005 13 6 1.6502 -2.5291 0.0002 14 6 1.4626 -2.9947 -1.4208 15 1 1.7267 -2.3442 -2.2415 16 6 0.9530 -4.2507 -1.6732 17 7 0.6310 -5.0426 -0.6738 18 14 0.7198 -4.8274 -3.4346 19 1 1.1541 -3.7570 -4.3676 20 1 1.5331 -6.0479 -3.6675 21 1 -0.7138 -5.1359 -3.6687 22 1 -0.3633 -0.0004 -1.0276 23 1 -0.3633 -0.8898 0.5141 24 1 -0.3634 0.8901 0.5135 25 1 3.1527 3.8663 -0.0015 26 1 5.4569 5.2341 0.0000 27 1 7.4178 3.4983 0.0021 28 1 2.3380 -3.2003 0.5145 29 1 0.6885 -2.5314 0.5131 30 1 0.2727 -5.9264 -0.8513 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259451234.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:22 Heat of formation + Delta-G solvation = 54.996352 kcal Electronic energy + Delta-G solvation = -14828.273394 eV Core-core repulsion = 12328.753550 eV Total energy + Delta-G solvation = -2499.519844 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.068 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.96819 -40.51969 -35.76223 -33.73145 -31.96812 -31.16506 -29.86435 -27.53118 -25.41721 -24.29067 -21.69286 -21.42570 -19.84638 -18.97018 -18.55528 -18.03759 -16.60425 -16.01844 -15.60273 -15.01251 -14.67493 -14.62832 -14.35650 -14.10547 -13.95574 -13.36551 -13.34074 -13.09742 -13.04990 -12.72780 -12.64006 -12.07827 -11.95083 -11.70757 -10.73360 -10.59439 -10.27819 -10.02277 -9.85684 -8.62481 -8.23688 -6.39747 -0.47206 0.29926 0.75577 1.20968 1.37184 1.39017 1.51355 1.91522 2.09664 2.25771 2.37591 3.05724 3.29193 4.02872 4.35358 4.37143 4.40382 4.51104 4.65222 4.76774 4.82773 4.92813 5.16293 5.26119 5.35026 5.40626 5.47007 5.64976 5.91021 6.02189 6.04500 6.58276 6.68345 6.79037 7.29079 8.83085 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.037365 B = 0.005369 C = 0.005120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.177017 B = 5214.320512 C = 5467.261664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.029 3.971 3 N -0.469 5.469 4 C 0.119 3.881 5 C 0.035 3.965 6 C -0.138 4.138 7 C -0.219 4.219 8 C 0.037 3.963 9 N -0.548 5.548 10 H 0.424 0.576 11 S 0.059 5.941 12 C -0.174 4.174 13 C 0.099 3.901 14 C -0.528 4.528 15 H 0.049 0.951 16 C 0.015 3.985 17 N -0.923 5.923 18 Si 0.963 3.037 19 H -0.270 1.270 20 H -0.275 1.275 21 H -0.273 1.273 22 H 0.071 0.929 23 H 0.070 0.930 24 H 0.083 0.917 25 H 0.136 0.864 26 H 0.167 0.833 27 H 0.217 0.783 28 H 0.008 0.992 29 H 0.033 0.967 30 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.407 14.461 1.379 17.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.101 4.101 3 N -0.184 5.184 4 C -0.156 4.156 5 C -0.079 4.079 6 C -0.169 4.169 7 C -0.243 4.243 8 C -0.097 4.097 9 N -0.145 5.145 10 H 0.262 0.738 11 S 0.316 5.684 12 C -0.295 4.295 13 C 0.060 3.940 14 C -0.567 4.567 15 H 0.067 0.933 16 C -0.185 4.185 17 N -0.563 5.563 18 Si 0.787 3.213 19 H -0.194 1.194 20 H -0.200 1.200 21 H -0.198 1.198 22 H 0.090 0.910 23 H 0.089 0.911 24 H 0.102 0.898 25 H 0.154 0.846 26 H 0.184 0.816 27 H 0.233 0.767 28 H 0.026 0.974 29 H 0.051 0.949 30 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 11.094 14.006 1.425 17.924 hybrid contribution -1.052 -1.257 -0.695 1.781 sum 10.042 12.748 0.730 16.245 Atomic orbital electron populations 1.20268 0.86077 1.02982 1.02910 1.20218 0.99244 0.85624 1.05019 1.66365 1.04198 1.30715 1.17126 1.24801 0.92257 0.93367 1.05174 1.17268 0.82285 0.91383 1.17011 1.21233 1.00107 0.90536 1.04996 1.21228 0.90803 1.00692 1.11573 1.22763 1.00983 0.81395 1.04592 1.42098 1.04237 1.09979 1.58227 0.73765 1.84297 1.08891 1.03248 1.71954 1.26113 0.93938 1.02047 1.07374 1.17574 0.95076 0.84267 0.97112 1.21242 1.43480 1.00271 0.91680 0.93256 1.25795 0.94609 0.96441 1.01609 1.70047 1.43860 1.09511 1.32849 0.85429 0.78271 0.78229 0.79350 1.19420 1.20045 1.19800 0.91024 0.91130 0.89779 0.84596 0.81590 0.76692 0.97405 0.94932 0.92272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.37 10.02 71.24 0.71 -1.66 16 2 C 0.03 1.24 6.69 41.58 0.28 1.52 16 3 N -0.47 -19.07 10.50 -178.28 -1.87 -20.95 16 4 C 0.12 4.39 7.46 87.25 0.65 5.04 16 5 C 0.04 1.05 7.08 40.24 0.28 1.33 16 6 C -0.14 -3.76 10.76 22.37 0.24 -3.52 16 7 C -0.22 -4.24 10.83 22.06 0.24 -4.00 16 8 C 0.04 0.59 11.92 83.30 0.99 1.58 16 9 N -0.55 -11.75 6.12 -184.06 -1.13 -12.88 16 10 H 0.42 7.44 8.96 -92.71 -0.83 6.61 16 11 S 0.06 2.25 23.42 -56.49 -1.32 0.93 16 12 C -0.17 -8.01 5.76 24.64 0.14 -7.86 16 13 C 0.10 5.21 5.16 29.10 0.15 5.36 16 14 C -0.53 -29.67 9.09 25.60 0.23 -29.44 16 15 H 0.05 2.80 7.74 -2.91 -0.02 2.78 16 16 C 0.01 0.82 5.46 84.65 0.46 1.28 16 17 N -0.92 -53.80 13.29 21.45 0.28 -53.51 16 18 Si 0.96 43.59 29.54 68.60 2.03 45.61 16 19 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 20 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 21 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 22 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 23 H 0.07 2.74 6.62 -2.39 -0.02 2.72 16 24 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 25 H 0.14 3.79 8.06 -2.91 -0.02 3.77 16 26 H 0.17 2.27 8.06 -2.91 -0.02 2.24 16 27 H 0.22 1.31 8.06 -2.91 -0.02 1.29 16 28 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.03 1.78 6.67 -2.39 -0.02 1.77 16 30 H 0.27 14.61 8.31 -92.71 -0.77 13.83 16 Total: -1.00 -66.98 281.34 2.71 -64.27 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: 0.34 Total: 6.89 kcal Atomic # 6 Polarization: -34.75 SS G_CDS: 4.39 Total: -30.36 kcal Atomic # 7 Polarization: -84.63 SS G_CDS: -2.71 Total: -87.34 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.61 kcal Atomic # 16 Polarization: 2.25 SS G_CDS: -1.32 Total: 0.93 kcal Total: -66.98 2.71 -64.27 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259451234.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.268 kcal (2) G-P(sol) polarization free energy of solvation -66.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.271 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds