Wall clock time and date at job start Mon Mar 30 2020 05:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35951 * 117.00132 * 2 1 4 4 C 1.40275 * 119.95949 * 269.97851 * 3 2 1 5 5 S 1.75903 * 130.54687 * 0.03611 * 4 3 2 6 6 C 1.75309 * 92.18133 * 179.97438 * 5 4 3 7 7 C 1.31857 * 111.36596 * 0.02562 * 6 5 4 8 8 C 1.39577 * 119.74402 * 180.02562 * 4 3 2 9 9 C 1.41321 * 118.85826 * 359.97438 * 8 4 3 10 10 C 1.36062 * 120.56243 * 0.02562 * 9 8 4 11 11 C 1.37928 * 119.95882 * 89.99860 * 3 2 1 12 12 C 1.50694 * 119.93560 * 359.97438 * 11 3 2 13 13 C 1.50698 * 109.47455 * 85.01899 * 12 11 3 14 14 H 1.08001 * 120.00188 * 0.02562 * 13 12 11 15 15 C 1.37882 * 120.00387 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00120 * 180.02562 * 15 13 12 17 17 Si 1.86806 * 119.99770 * 359.97438 * 15 13 12 18 18 H 1.48505 * 109.46492 * 90.00283 * 17 15 13 19 19 H 1.48499 * 109.46980 * 210.00014 * 17 15 13 20 20 H 1.48501 * 109.46941 * 330.00382 * 17 15 13 21 21 H 1.08995 * 109.47353 * 179.97438 * 1 2 3 22 22 H 1.09009 * 109.47080 * 300.00151 * 1 2 3 23 23 H 1.09004 * 109.47313 * 59.99584 * 1 2 3 24 24 H 1.07995 * 124.31457 * 179.97438 * 6 5 4 25 25 H 1.07999 * 122.55357 * 179.97438 * 7 6 5 26 26 H 1.07996 * 119.72376 * 179.97438 * 9 8 4 27 27 H 1.07995 * 119.68582 * 179.97438 * 10 9 8 28 28 H 1.09000 * 109.47237 * 205.01704 * 12 11 3 29 29 H 1.08999 * 109.47546 * 325.01869 * 12 11 3 30 30 H 0.96998 * 119.99517 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0461 1.2113 0.0000 4 6 2.3646 1.8353 -1.2153 5 16 2.0979 1.3124 -2.8735 6 6 2.8377 2.7638 -3.5210 7 6 3.2469 3.5654 -2.5573 8 6 2.9988 3.0786 -1.2101 9 6 3.3059 3.6824 0.0302 10 6 2.9892 3.0620 1.1990 11 6 2.3588 1.8250 1.1950 12 6 2.0151 1.1518 2.4986 13 6 3.1129 0.1892 2.8718 14 1 3.9737 0.0765 2.2293 15 6 3.0190 -0.5469 4.0338 16 7 3.9773 -1.3866 4.3597 17 14 1.5311 -0.3504 5.1462 18 1 0.4797 -1.3181 4.7418 19 1 1.9276 -0.6096 6.5536 20 1 1.0033 1.0326 5.0272 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 2.9453 2.9742 -4.5748 25 1 3.7296 4.5113 -2.7539 26 1 3.7969 4.6441 0.0506 27 1 3.2309 3.5361 2.1388 28 1 1.9110 1.9047 3.2800 29 1 1.0765 0.6083 2.3906 30 1 3.9113 -1.9041 5.1774 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259514533.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:14 Heat of formation + Delta-G solvation = 4.870918 kcal Electronic energy + Delta-G solvation = -15463.476346 eV Core-core repulsion = 12929.490148 eV Total energy + Delta-G solvation = -2533.986197 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.72025 -37.37812 -35.04583 -32.86891 -30.68731 -29.89229 -27.36528 -26.33025 -23.62139 -22.39552 -21.14298 -20.08028 -17.79805 -16.79308 -16.34785 -15.88244 -15.06135 -14.55949 -14.35083 -14.15709 -13.87186 -13.19328 -13.09296 -12.60347 -12.04566 -11.92365 -11.71644 -11.61738 -11.25327 -10.82089 -10.55126 -10.35275 -10.23581 -9.95297 -9.48299 -9.34550 -9.15017 -8.55734 -7.92240 -7.27332 -6.04387 -4.02564 1.05680 1.54637 1.78374 2.25490 2.53715 3.28372 3.35864 3.36812 3.92092 4.33913 4.42173 4.81202 5.23227 5.29779 5.38240 5.49656 5.57947 5.65199 5.70071 5.84104 5.98050 6.00389 6.12497 6.36444 6.57351 6.66862 6.81466 6.93482 7.16034 7.36006 7.67727 8.01253 8.51515 9.01216 9.54781 11.08871 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.033089 B = 0.006968 C = 0.006385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.994177 B = 4017.133957 C = 4383.947022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.315 6.315 3 C 0.118 3.882 4 C -0.146 4.146 5 S 0.076 5.924 6 C -0.210 4.210 7 C -0.110 4.110 8 C -0.094 4.094 9 C -0.088 4.088 10 C -0.103 4.103 11 C -0.028 4.028 12 C 0.021 3.979 13 C -0.503 4.503 14 H 0.074 0.926 15 C 0.070 3.930 16 N -0.899 5.899 17 Si 0.875 3.125 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.266 1.266 21 H 0.091 0.909 22 H 0.047 0.953 23 H 0.037 0.963 24 H 0.162 0.838 25 H 0.141 0.859 26 H 0.123 0.877 27 H 0.132 0.868 28 H 0.030 0.970 29 H 0.027 0.973 30 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.813 9.461 -12.184 16.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.231 6.231 3 C 0.069 3.931 4 C -0.261 4.261 5 S 0.339 5.661 6 C -0.343 4.343 7 C -0.140 4.140 8 C -0.101 4.101 9 C -0.108 4.108 10 C -0.123 4.123 11 C -0.031 4.031 12 C -0.016 4.016 13 C -0.541 4.541 14 H 0.092 0.908 15 C -0.131 4.131 16 N -0.538 5.538 17 Si 0.702 3.298 18 H -0.201 1.201 19 H -0.212 1.212 20 H -0.190 1.190 21 H 0.110 0.890 22 H 0.066 0.934 23 H 0.056 0.944 24 H 0.180 0.820 25 H 0.158 0.842 26 H 0.141 0.859 27 H 0.150 0.850 28 H 0.048 0.952 29 H 0.045 0.955 30 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.309 7.901 -12.803 16.314 hybrid contribution -0.112 1.314 1.206 1.787 sum -6.421 9.215 -11.596 16.144 Atomic orbital electron populations 1.22935 0.80165 1.02924 1.00019 1.86162 1.18829 1.24150 1.94001 1.17684 0.99551 0.86648 0.89204 1.22991 1.07481 0.98777 0.96878 1.84060 1.64439 1.21500 0.96078 1.24987 1.07293 0.99079 1.02949 1.20887 1.02130 1.00767 0.90261 1.19094 1.03106 0.94099 0.93794 1.20633 1.00121 0.99719 0.90346 1.20628 0.98574 0.94953 0.98109 1.20548 0.94256 0.92560 0.95733 1.18752 0.98099 0.95925 0.88824 1.20810 1.05060 1.21102 1.07118 0.90790 1.24948 0.95995 0.94746 0.97396 1.69893 1.32942 1.25996 1.24943 0.86856 0.83642 0.79077 0.80224 1.20146 1.21207 1.19033 0.89044 0.93439 0.94392 0.82045 0.84163 0.85891 0.85046 0.95227 0.95496 0.92630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 10.78 101.05 1.09 1.65 16 2 O -0.32 -6.68 9.66 -19.58 -0.19 -6.87 16 3 C 0.12 2.46 5.72 -38.93 -0.22 2.23 16 4 C -0.15 -2.70 6.43 -38.32 -0.25 -2.95 16 5 S 0.08 1.17 23.22 -107.50 -2.50 -1.33 16 6 C -0.21 -2.66 11.02 28.83 0.32 -2.34 16 7 C -0.11 -1.47 10.39 -38.64 -0.40 -1.87 16 8 C -0.09 -1.56 6.04 -105.39 -0.64 -2.20 16 9 C -0.09 -1.41 10.04 -39.19 -0.39 -1.80 16 10 C -0.10 -1.89 9.58 -40.14 -0.38 -2.27 16 11 C -0.03 -0.59 5.08 -104.52 -0.53 -1.12 16 12 C 0.02 0.51 3.88 -29.04 -0.11 0.39 16 13 C -0.50 -14.45 9.65 -34.44 -0.33 -14.79 16 14 H 0.07 2.36 7.98 -52.49 -0.42 1.95 16 15 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 16 N -0.90 -27.80 13.96 55.43 0.77 -27.03 16 17 Si 0.87 21.34 27.47 -169.99 -4.67 16.67 16 18 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 20 H -0.27 -6.12 6.54 56.52 0.37 -5.75 16 21 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 22 H 0.05 0.76 7.15 -51.92 -0.37 0.39 16 23 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.16 1.50 8.06 -52.49 -0.42 1.08 16 25 H 0.14 1.44 8.06 -52.49 -0.42 1.02 16 26 H 0.12 1.54 8.06 -52.49 -0.42 1.11 16 27 H 0.13 2.18 8.06 -52.49 -0.42 1.76 16 28 H 0.03 0.68 7.11 -51.93 -0.37 0.32 16 29 H 0.03 0.64 5.79 -51.93 -0.30 0.34 16 30 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 274.00 15.07 4.13 4.13 Total: -1.00 -32.23 274.00 -7.57 -39.79 By element: Atomic # 1 Polarization: 0.91 SS G_CDS: -3.16 Total: -2.26 kcal Atomic # 6 Polarization: -21.15 SS G_CDS: -1.95 Total: -23.10 kcal Atomic # 7 Polarization: -27.80 SS G_CDS: 0.77 Total: -27.03 kcal Atomic # 8 Polarization: -6.68 SS G_CDS: -0.19 Total: -6.87 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.67 Total: 16.67 kcal Atomic # 16 Polarization: 1.17 SS G_CDS: -2.50 Total: -1.33 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -32.23 -7.57 -39.79 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259514533.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.665 kcal (2) G-P(sol) polarization free energy of solvation -32.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds