Wall clock time and date at job start Mon Mar 30 2020 05:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35951 * 117.00132 * 2 1 4 4 C 1.40275 * 119.95949 * 269.97851 * 3 2 1 5 5 S 1.75903 * 130.54687 * 0.03611 * 4 3 2 6 6 C 1.75309 * 92.18133 * 179.97438 * 5 4 3 7 7 C 1.31857 * 111.36596 * 0.02562 * 6 5 4 8 8 C 1.39577 * 119.74402 * 180.02562 * 4 3 2 9 9 C 1.41321 * 118.85826 * 359.97438 * 8 4 3 10 10 C 1.36062 * 120.56243 * 0.02562 * 9 8 4 11 11 C 1.37928 * 119.95882 * 89.99860 * 3 2 1 12 12 C 1.50694 * 119.93560 * 359.97438 * 11 3 2 13 13 C 1.50698 * 109.47455 * 85.01899 * 12 11 3 14 14 H 1.08001 * 120.00188 * 0.02562 * 13 12 11 15 15 C 1.37882 * 120.00387 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00120 * 180.02562 * 15 13 12 17 17 Si 1.86806 * 119.99770 * 359.97438 * 15 13 12 18 18 H 1.48505 * 109.46492 * 90.00283 * 17 15 13 19 19 H 1.48499 * 109.46980 * 210.00014 * 17 15 13 20 20 H 1.48501 * 109.46941 * 330.00382 * 17 15 13 21 21 H 1.08995 * 109.47353 * 179.97438 * 1 2 3 22 22 H 1.09009 * 109.47080 * 300.00151 * 1 2 3 23 23 H 1.09004 * 109.47313 * 59.99584 * 1 2 3 24 24 H 1.07995 * 124.31457 * 179.97438 * 6 5 4 25 25 H 1.07999 * 122.55357 * 179.97438 * 7 6 5 26 26 H 1.07996 * 119.72376 * 179.97438 * 9 8 4 27 27 H 1.07995 * 119.68582 * 179.97438 * 10 9 8 28 28 H 1.09000 * 109.47237 * 205.01704 * 12 11 3 29 29 H 1.08999 * 109.47546 * 325.01869 * 12 11 3 30 30 H 0.96998 * 119.99517 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0461 1.2113 0.0000 4 6 2.3646 1.8353 -1.2153 5 16 2.0979 1.3124 -2.8735 6 6 2.8377 2.7638 -3.5210 7 6 3.2469 3.5654 -2.5573 8 6 2.9988 3.0786 -1.2101 9 6 3.3059 3.6824 0.0302 10 6 2.9892 3.0620 1.1990 11 6 2.3588 1.8250 1.1950 12 6 2.0151 1.1518 2.4986 13 6 3.1129 0.1892 2.8718 14 1 3.9737 0.0765 2.2293 15 6 3.0190 -0.5469 4.0338 16 7 3.9773 -1.3866 4.3597 17 14 1.5311 -0.3504 5.1462 18 1 0.4797 -1.3181 4.7418 19 1 1.9276 -0.6096 6.5536 20 1 1.0033 1.0326 5.0272 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 2.9453 2.9742 -4.5748 25 1 3.7296 4.5113 -2.7539 26 1 3.7969 4.6441 0.0506 27 1 3.2309 3.5361 2.1388 28 1 1.9110 1.9047 3.2800 29 1 1.0765 0.6083 2.3906 30 1 3.9113 -1.9041 5.1774 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259514533.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:14 Heat of formation + Delta-G solvation = -15.178895 kcal Electronic energy + Delta-G solvation = -15464.345771 eV Core-core repulsion = 12929.490148 eV Total energy + Delta-G solvation = -2534.855622 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.10665 -38.73336 -36.46265 -34.85112 -32.41234 -31.22740 -28.94115 -27.75569 -25.20928 -23.90827 -22.57853 -21.39714 -19.12010 -18.98965 -17.66455 -17.27296 -16.53288 -16.39316 -15.52987 -15.50146 -15.37611 -14.58352 -14.46190 -14.36171 -13.68480 -13.58681 -13.10719 -12.99037 -12.62745 -12.55501 -12.07266 -11.92002 -11.73341 -11.61369 -11.47004 -10.92874 -10.77079 -10.42162 -9.30571 -8.54574 -8.28413 -6.32745 -0.19428 0.18377 0.57744 1.12313 1.34770 1.35560 1.37097 1.48291 2.35084 2.58754 2.93172 3.05492 3.70970 4.01856 4.07624 4.30648 4.37201 4.40766 4.45522 4.57553 4.66811 4.78298 4.97488 4.99365 5.04063 5.11867 5.37841 5.49024 5.55635 5.73688 5.81954 6.25125 6.57887 6.71603 7.28738 8.88803 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.033089 B = 0.006968 C = 0.006385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.994177 B = 4017.133957 C = 4383.947022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.349 6.349 3 C 0.101 3.899 4 C -0.178 4.178 5 S 0.067 5.933 6 C -0.189 4.189 7 C -0.116 4.116 8 C -0.094 4.094 9 C -0.080 4.080 10 C -0.115 4.115 11 C -0.071 4.071 12 C 0.031 3.969 13 C -0.509 4.509 14 H 0.020 0.980 15 C 0.007 3.993 16 N -0.951 5.951 17 Si 0.950 3.050 18 H -0.267 1.267 19 H -0.281 1.281 20 H -0.241 1.241 21 H 0.108 0.892 22 H 0.045 0.955 23 H 0.056 0.944 24 H 0.204 0.796 25 H 0.181 0.819 26 H 0.165 0.835 27 H 0.142 0.858 28 H 0.039 0.961 29 H 0.027 0.973 30 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.868 11.870 -13.700 19.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.267 6.267 3 C 0.053 3.947 4 C -0.294 4.294 5 S 0.330 5.670 6 C -0.322 4.322 7 C -0.145 4.145 8 C -0.102 4.102 9 C -0.099 4.099 10 C -0.134 4.134 11 C -0.074 4.074 12 C -0.006 4.006 13 C -0.547 4.547 14 H 0.038 0.962 15 C -0.189 4.189 16 N -0.592 5.592 17 Si 0.772 3.228 18 H -0.192 1.192 19 H -0.206 1.206 20 H -0.164 1.164 21 H 0.126 0.874 22 H 0.064 0.936 23 H 0.074 0.926 24 H 0.221 0.779 25 H 0.198 0.802 26 H 0.183 0.817 27 H 0.160 0.840 28 H 0.057 0.943 29 H 0.045 0.955 30 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.374 10.327 -14.337 19.146 hybrid contribution 0.295 0.564 1.466 1.598 sum -7.079 10.891 -12.872 18.287 Atomic orbital electron populations 1.23137 0.78150 1.04331 1.00802 1.86075 1.21114 1.25184 1.94288 1.17905 1.00026 0.86545 0.90228 1.23211 1.08555 0.99941 0.97649 1.84074 1.64929 1.23597 0.94417 1.25477 1.05078 0.96770 1.04869 1.21193 1.02592 1.02462 0.88264 1.19687 1.01462 0.93303 0.95762 1.21024 0.98823 1.00838 0.89217 1.20809 0.98645 0.94177 0.99818 1.20474 0.97596 0.94520 0.94796 1.18520 0.96139 0.95077 0.90870 1.21008 1.04895 1.22410 1.06367 0.96188 1.25967 0.99602 0.94140 0.99228 1.70066 1.35654 1.27515 1.25942 0.85676 0.79121 0.80456 0.77545 1.19225 1.20614 1.16434 0.87363 0.93612 0.92578 0.77924 0.80158 0.81728 0.83980 0.94275 0.95499 0.92409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.98 10.78 113.37 1.22 2.20 16 2 O -0.35 -15.33 9.66 -92.99 -0.90 -16.23 16 3 C 0.10 4.32 5.72 22.69 0.13 4.45 16 4 C -0.18 -6.50 6.43 23.09 0.15 -6.35 16 5 S 0.07 1.95 23.22 -56.49 -1.31 0.64 16 6 C -0.19 -3.99 11.02 67.01 0.74 -3.25 16 7 C -0.12 -2.59 10.39 23.30 0.24 -2.34 16 8 C -0.09 -2.91 6.04 -20.36 -0.12 -3.03 16 9 C -0.08 -2.37 10.04 22.52 0.23 -2.14 16 10 C -0.11 -4.16 9.58 21.91 0.21 -3.95 16 11 C -0.07 -3.11 5.08 -19.80 -0.10 -3.21 16 12 C 0.03 1.53 3.88 29.10 0.11 1.64 16 13 C -0.51 -30.65 9.65 25.60 0.25 -30.41 16 14 H 0.02 1.36 7.98 -2.91 -0.02 1.34 16 15 C 0.01 0.43 5.47 84.66 0.46 0.89 16 16 N -0.95 -61.24 13.96 21.45 0.30 -60.94 16 17 Si 0.95 44.49 27.47 68.60 1.88 46.37 16 18 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 19 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 20 H -0.24 -10.25 6.54 99.48 0.65 -9.60 16 21 H 0.11 3.07 8.14 -2.39 -0.02 3.05 16 22 H 0.05 1.49 7.15 -2.38 -0.02 1.47 16 23 H 0.06 1.59 8.14 -2.38 -0.02 1.58 16 24 H 0.20 2.59 8.06 -2.91 -0.02 2.56 16 25 H 0.18 2.60 8.06 -2.91 -0.02 2.58 16 26 H 0.17 3.42 8.06 -2.91 -0.02 3.40 16 27 H 0.14 4.65 8.06 -2.91 -0.02 4.62 16 28 H 0.04 1.80 7.11 -2.39 -0.02 1.79 16 29 H 0.03 1.30 5.79 -2.39 -0.01 1.28 16 30 H 0.27 15.93 8.31 -92.71 -0.77 15.16 16 Total: -1.00 -74.50 274.00 4.58 -69.92 By element: Atomic # 1 Polarization: 4.67 SS G_CDS: 1.09 Total: 5.76 kcal Atomic # 6 Polarization: -49.03 SS G_CDS: 3.52 Total: -45.51 kcal Atomic # 7 Polarization: -61.24 SS G_CDS: 0.30 Total: -60.94 kcal Atomic # 8 Polarization: -15.33 SS G_CDS: -0.90 Total: -16.23 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 1.88 Total: 46.37 kcal Atomic # 16 Polarization: 1.95 SS G_CDS: -1.31 Total: 0.64 kcal Total: -74.50 4.58 -69.92 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259514533.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.738 kcal (2) G-P(sol) polarization free energy of solvation -74.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds