Wall clock time and date at job start Mon Mar 30 2020 06:20:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86797 * 119.99966 * 2 1 4 4 H 1.48499 * 109.47453 * 270.00291 * 3 2 1 5 5 H 1.48496 * 109.47064 * 30.00734 * 3 2 1 6 6 H 1.48503 * 109.46749 * 150.00205 * 3 2 1 7 7 C 1.37878 * 119.99524 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99331 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00666 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47509 * 180.02562 * 9 7 2 11 11 C 1.52994 * 109.46984 * 179.97438 * 10 9 7 12 12 C 1.50707 * 109.46877 * 179.97438 * 11 10 9 13 13 C 1.38742 * 119.87509 * 264.99740 * 12 11 10 14 14 C 1.37819 * 120.71029 * 179.72339 * 13 12 11 15 15 C 1.38966 * 120.00875 * 0.27576 * 14 13 12 16 16 O 1.34832 * 133.40151 * 179.97438 * 15 14 13 17 17 C 1.34472 * 110.89247 * 180.02562 * 16 15 14 18 18 C 1.33974 * 110.13900 * 0.02562 * 17 16 15 19 19 C 1.40427 * 119.33167 * 0.02562 * 15 14 13 20 20 C 1.37946 * 119.88051 * 85.26026 * 12 11 10 21 21 F 1.35107 * 120.22011 * 0.03311 * 20 12 11 22 22 H 0.96997 * 119.99575 * 359.97438 * 1 2 3 23 23 H 1.09003 * 109.46886 * 59.99790 * 9 7 2 24 24 H 1.09005 * 109.46780 * 300.00101 * 9 7 2 25 25 H 1.08995 * 109.46753 * 59.99816 * 10 9 7 26 26 H 1.08998 * 109.46671 * 299.99924 * 10 9 7 27 27 H 1.08995 * 109.47411 * 60.00360 * 11 10 9 28 28 H 1.08998 * 109.47469 * 299.99576 * 11 10 9 29 29 H 1.08002 * 119.64799 * 0.02562 * 13 12 11 30 30 H 1.08007 * 119.99316 * 180.30107 * 14 13 12 31 31 H 1.08000 * 124.92754 * 180.02562 * 17 16 15 32 32 H 1.07999 * 126.90887 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6622 -0.0005 11 6 1.4802 -4.9871 0.0001 12 6 2.4595 -6.1326 -0.0005 13 6 2.8280 -6.7261 -1.1992 14 6 3.7265 -7.7710 -1.2203 15 6 4.2694 -8.2448 -0.0321 16 8 5.1475 -9.2258 0.2589 17 6 5.3613 -9.3002 1.5845 18 6 4.6337 -8.3732 2.2218 19 6 3.8924 -7.6490 1.1823 20 6 2.9821 -6.5907 1.1911 21 9 2.6184 -6.0162 2.3586 22 1 -0.4849 0.8401 0.0004 23 1 0.6240 -2.5567 -0.8903 24 1 0.6247 -2.5571 0.8897 25 1 2.8719 -3.6044 0.8894 26 1 2.8719 -3.6044 -0.8905 27 1 0.8533 -5.0451 -0.8896 28 1 0.8539 -5.0446 0.8903 29 1 2.4100 -6.3623 -2.1262 30 1 4.0089 -8.2213 -2.1605 31 1 6.0234 -10.0050 2.0654 32 1 4.5994 -8.1948 3.2864 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259526841.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:17 Heat of formation + Delta-G solvation = -38.486883 kcal Electronic energy + Delta-G solvation = -16941.975768 eV Core-core repulsion = 13975.729354 eV Total energy + Delta-G solvation = -2966.246414 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.095 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -48.71177 -42.50038 -38.14411 -34.56310 -32.87469 -32.38885 -30.04311 -29.25070 -26.77447 -23.91991 -22.96621 -21.53856 -21.35796 -20.06980 -18.03526 -17.59519 -16.33867 -16.33133 -15.74304 -15.30029 -15.19827 -14.75518 -14.41589 -13.82369 -13.38495 -13.08029 -12.81523 -12.54563 -12.23266 -11.72901 -11.57350 -11.44619 -11.16531 -10.75121 -10.64528 -10.47116 -10.26719 -9.66236 -9.36318 -9.08946 -8.48552 -8.31614 -8.08535 -5.96891 -3.98894 0.75215 1.20950 2.20610 2.63405 3.34141 3.40168 3.44134 3.50737 4.18156 4.28534 4.48871 4.73431 4.82316 4.92954 5.14527 5.30428 5.38894 5.45686 5.68744 5.81225 6.00687 6.03809 6.11116 6.20376 6.29318 6.34836 6.62422 6.78414 6.89380 7.01698 7.15644 7.71013 7.85715 8.03496 8.46519 9.08106 9.64938 11.14503 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.039815 B = 0.004272 C = 0.004198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.077926 B = 6552.340064 C = 6668.979320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.519 4.519 8 H 0.054 0.946 9 C 0.021 3.979 10 C -0.103 4.103 11 C -0.081 4.081 12 C -0.115 4.115 13 C -0.062 4.062 14 C -0.119 4.119 15 C 0.068 3.932 16 O -0.194 6.194 17 C 0.001 3.999 18 C -0.198 4.198 19 C -0.170 4.170 20 C 0.144 3.856 21 F -0.127 7.127 22 H 0.260 0.740 23 H 0.017 0.983 24 H 0.016 0.984 25 H 0.048 0.952 26 H 0.050 0.950 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.147 0.853 30 H 0.137 0.863 31 H 0.209 0.791 32 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.127 -19.172 0.589 20.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.558 4.558 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.141 4.141 11 C -0.118 4.118 12 C -0.116 4.116 13 C -0.080 4.080 14 C -0.137 4.137 15 C 0.021 3.979 16 O -0.096 6.096 17 C -0.063 4.063 18 C -0.217 4.217 19 C -0.171 4.171 20 C 0.125 3.875 21 F -0.106 7.106 22 H 0.070 0.930 23 H 0.035 0.965 24 H 0.035 0.965 25 H 0.067 0.933 26 H 0.069 0.931 27 H 0.094 0.906 28 H 0.091 0.909 29 H 0.165 0.835 30 H 0.154 0.846 31 H 0.226 0.774 32 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 8.079 -19.191 0.443 20.827 hybrid contribution 0.415 1.099 0.524 1.287 sum 8.494 -18.091 0.967 20.009 Atomic orbital electron populations 1.69968 1.06038 1.26539 1.51038 1.25021 0.94842 0.99212 0.95384 0.86605 0.79882 0.83521 0.78077 1.20669 1.21225 1.19898 1.21265 0.93046 0.91112 1.50353 0.92745 1.19113 0.93970 0.91227 0.97288 1.21635 0.99086 0.92806 1.00581 1.20734 0.95831 0.92081 1.03196 1.20173 1.00919 0.99337 0.91136 1.20793 0.95627 0.93722 0.97837 1.19927 0.99798 0.99220 0.94794 1.19352 0.93470 0.90336 0.94779 1.84016 1.52895 1.47223 1.25430 1.23897 1.01501 1.01057 0.79875 1.22448 1.00865 0.98589 0.99831 1.19858 1.02550 1.00124 0.94598 1.16852 0.96262 0.92613 0.81798 1.91505 1.89952 1.83217 1.45903 0.93042 0.96491 0.96517 0.93338 0.93134 0.90584 0.90950 0.83546 0.84551 0.77440 0.82344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.28 13.29 55.43 0.74 -26.55 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.52 -15.03 9.11 -34.44 -0.31 -15.34 16 8 H 0.05 1.54 7.74 -52.48 -0.41 1.13 16 9 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 10 C -0.10 -2.19 5.14 -26.73 -0.14 -2.33 16 11 C -0.08 -1.41 5.12 -27.88 -0.14 -1.56 16 12 C -0.11 -1.79 5.14 -104.54 -0.54 -2.33 16 13 C -0.06 -0.79 9.64 -39.55 -0.38 -1.18 16 14 C -0.12 -1.42 10.06 -39.47 -0.40 -1.82 16 15 C 0.07 0.91 7.41 -38.49 -0.29 0.63 16 16 O -0.19 -2.33 10.58 3.78 0.04 -2.29 16 17 C 0.00 0.01 11.96 29.23 0.35 0.36 16 18 C -0.20 -2.29 11.14 -37.63 -0.42 -2.71 16 19 C -0.17 -2.48 6.38 -105.11 -0.67 -3.15 16 20 C 0.14 2.34 7.28 -39.18 -0.29 2.06 16 21 F -0.13 -2.23 16.56 2.25 0.04 -2.20 16 22 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 23 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 24 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 26 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.08 1.21 8.05 -51.93 -0.42 0.80 16 28 H 0.07 1.30 7.78 -51.93 -0.40 0.89 16 29 H 0.15 1.55 8.06 -52.49 -0.42 1.12 16 30 H 0.14 1.24 8.06 -52.48 -0.42 0.81 16 31 H 0.21 0.94 8.06 -52.49 -0.42 0.52 16 32 H 0.16 1.52 8.06 -52.49 -0.42 1.10 16 LS Contribution 286.77 15.07 4.32 4.32 Total: -1.00 -32.46 286.77 -7.09 -39.54 By element: Atomic # 1 Polarization: -0.65 SS G_CDS: -3.75 Total: -4.40 kcal Atomic # 6 Polarization: -21.95 SS G_CDS: -3.46 Total: -25.41 kcal Atomic # 7 Polarization: -27.28 SS G_CDS: 0.74 Total: -26.55 kcal Atomic # 8 Polarization: -2.33 SS G_CDS: 0.04 Total: -2.29 kcal Atomic # 9 Polarization: -2.23 SS G_CDS: 0.04 Total: -2.20 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -32.46 -7.09 -39.54 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259526841.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.055 kcal (2) G-P(sol) polarization free energy of solvation -32.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds