Wall clock time and date at job start Mon Mar 30 2020 06:20:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86797 * 119.99966 * 2 1 4 4 H 1.48499 * 109.47453 * 270.00291 * 3 2 1 5 5 H 1.48496 * 109.47064 * 30.00734 * 3 2 1 6 6 H 1.48503 * 109.46749 * 150.00205 * 3 2 1 7 7 C 1.37878 * 119.99524 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99331 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00666 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47509 * 180.02562 * 9 7 2 11 11 C 1.52994 * 109.46984 * 179.97438 * 10 9 7 12 12 C 1.50707 * 109.46877 * 179.97438 * 11 10 9 13 13 C 1.38742 * 119.87509 * 264.99740 * 12 11 10 14 14 C 1.37819 * 120.71029 * 179.72339 * 13 12 11 15 15 C 1.38966 * 120.00875 * 0.27576 * 14 13 12 16 16 O 1.34832 * 133.40151 * 179.97438 * 15 14 13 17 17 C 1.34472 * 110.89247 * 180.02562 * 16 15 14 18 18 C 1.33974 * 110.13900 * 0.02562 * 17 16 15 19 19 C 1.40427 * 119.33167 * 0.02562 * 15 14 13 20 20 C 1.37946 * 119.88051 * 85.26026 * 12 11 10 21 21 F 1.35107 * 120.22011 * 0.03311 * 20 12 11 22 22 H 0.96997 * 119.99575 * 359.97438 * 1 2 3 23 23 H 1.09003 * 109.46886 * 59.99790 * 9 7 2 24 24 H 1.09005 * 109.46780 * 300.00101 * 9 7 2 25 25 H 1.08995 * 109.46753 * 59.99816 * 10 9 7 26 26 H 1.08998 * 109.46671 * 299.99924 * 10 9 7 27 27 H 1.08995 * 109.47411 * 60.00360 * 11 10 9 28 28 H 1.08998 * 109.47469 * 299.99576 * 11 10 9 29 29 H 1.08002 * 119.64799 * 0.02562 * 13 12 11 30 30 H 1.08007 * 119.99316 * 180.30107 * 14 13 12 31 31 H 1.08000 * 124.92754 * 180.02562 * 17 16 15 32 32 H 1.07999 * 126.90887 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6622 -0.0005 11 6 1.4802 -4.9871 0.0001 12 6 2.4595 -6.1326 -0.0005 13 6 2.8280 -6.7261 -1.1992 14 6 3.7265 -7.7710 -1.2203 15 6 4.2694 -8.2448 -0.0321 16 8 5.1475 -9.2258 0.2589 17 6 5.3613 -9.3002 1.5845 18 6 4.6337 -8.3732 2.2218 19 6 3.8924 -7.6490 1.1823 20 6 2.9821 -6.5907 1.1911 21 9 2.6184 -6.0162 2.3586 22 1 -0.4849 0.8401 0.0004 23 1 0.6240 -2.5567 -0.8903 24 1 0.6247 -2.5571 0.8897 25 1 2.8719 -3.6044 0.8894 26 1 2.8719 -3.6044 -0.8905 27 1 0.8533 -5.0451 -0.8896 28 1 0.8539 -5.0446 0.8903 29 1 2.4100 -6.3623 -2.1262 30 1 4.0089 -8.2213 -2.1605 31 1 6.0234 -10.0050 2.0654 32 1 4.5994 -8.1948 3.2864 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259526841.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:16 Heat of formation + Delta-G solvation = -56.462878 kcal Electronic energy + Delta-G solvation = -16942.755266 eV Core-core repulsion = 13975.729354 eV Total energy + Delta-G solvation = -2967.025912 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.095 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.96263 -43.41860 -39.24228 -36.31659 -34.43970 -33.66785 -31.60821 -30.20168 -28.45978 -25.63169 -23.99048 -22.95239 -22.29729 -21.78983 -19.05801 -18.61047 -18.44238 -17.32561 -16.97658 -16.55182 -16.38930 -16.29710 -15.73947 -15.52176 -14.50392 -14.32325 -14.24551 -13.94338 -13.64472 -13.21055 -13.01989 -12.90706 -12.72849 -12.37791 -12.33502 -12.29524 -11.50940 -11.35847 -11.21059 -11.15575 -10.55661 -9.56678 -9.11995 -8.20475 -6.31779 -0.23100 0.13255 1.35350 1.39069 1.40844 1.51998 1.77415 2.40000 2.45727 3.12252 3.13560 3.36789 3.68861 3.80301 3.98861 4.17438 4.28092 4.45910 4.47830 4.53812 4.75931 4.85466 4.91353 5.03380 5.10800 5.18719 5.21421 5.34961 5.37592 5.50319 5.57147 5.74453 5.84797 6.07477 6.24921 6.84460 7.37280 8.91311 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.039815 B = 0.004272 C = 0.004198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.077926 B = 6552.340064 C = 6668.979320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.000 4.000 3 Si 0.965 3.035 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.267 1.267 7 C -0.546 4.546 8 H 0.056 0.944 9 C 0.024 3.976 10 C -0.089 4.089 11 C -0.071 4.071 12 C -0.127 4.127 13 C -0.066 4.066 14 C -0.102 4.102 15 C 0.055 3.945 16 O -0.195 6.195 17 C 0.031 3.969 18 C -0.232 4.232 19 C -0.188 4.188 20 C 0.110 3.890 21 F -0.147 7.147 22 H 0.264 0.736 23 H 0.001 0.999 24 H -0.012 1.012 25 H 0.034 0.966 26 H 0.059 0.941 27 H 0.091 0.909 28 H 0.057 0.943 29 H 0.172 0.828 30 H 0.172 0.828 31 H 0.261 0.739 32 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.157 -20.429 -0.383 22.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.197 4.197 3 Si 0.789 3.211 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.191 1.191 7 C -0.584 4.584 8 H 0.074 0.926 9 C -0.013 4.013 10 C -0.126 4.126 11 C -0.109 4.109 12 C -0.128 4.128 13 C -0.084 4.084 14 C -0.121 4.121 15 C 0.007 3.993 16 O -0.096 6.096 17 C -0.032 4.032 18 C -0.251 4.251 19 C -0.190 4.190 20 C 0.091 3.909 21 F -0.125 7.125 22 H 0.073 0.927 23 H 0.020 0.980 24 H 0.006 0.994 25 H 0.053 0.947 26 H 0.077 0.923 27 H 0.110 0.890 28 H 0.076 0.924 29 H 0.189 0.811 30 H 0.190 0.810 31 H 0.277 0.723 32 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 10.115 -20.463 -0.531 22.832 hybrid contribution -0.177 1.378 0.847 1.627 sum 9.938 -19.085 0.316 21.520 Atomic orbital electron populations 1.70096 1.07746 1.27808 1.51620 1.25975 0.95797 1.03313 0.94643 0.85450 0.78546 0.78411 0.78672 1.19375 1.20588 1.19095 1.21696 0.93434 0.92565 1.50699 0.92558 1.19021 0.94367 0.92831 0.95060 1.21387 0.97953 0.93062 1.00217 1.20511 0.95980 0.91095 1.03273 1.20079 1.01111 0.99305 0.92286 1.21055 0.95877 0.93886 0.97551 1.20320 0.97999 0.97948 0.95792 1.19660 0.93970 0.90770 0.94885 1.84049 1.52293 1.46532 1.26774 1.24859 0.99827 0.99980 0.78581 1.22741 1.02169 0.99794 1.00348 1.20220 1.02365 0.99850 0.96583 1.17186 0.98096 0.94180 0.81485 1.91443 1.90391 1.83766 1.46939 0.92699 0.98035 0.99364 0.94724 0.92267 0.89047 0.92394 0.81086 0.81023 0.72325 0.81248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.80 13.29 21.45 0.28 -57.52 16 2 C 0.00 0.03 5.46 84.65 0.46 0.49 16 3 Si 0.96 45.23 29.54 68.60 2.03 47.26 16 4 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 5 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 6 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 7 C -0.55 -32.24 9.11 25.60 0.23 -32.00 16 8 H 0.06 3.22 7.74 -2.91 -0.02 3.19 16 9 C 0.02 1.33 4.97 29.85 0.15 1.47 16 10 C -0.09 -3.87 5.14 30.59 0.16 -3.71 16 11 C -0.07 -2.56 5.12 29.85 0.15 -2.40 16 12 C -0.13 -3.97 5.14 -19.81 -0.10 -4.08 16 13 C -0.07 -1.58 9.64 22.29 0.21 -1.37 16 14 C -0.10 -2.17 10.06 22.35 0.22 -1.95 16 15 C 0.05 1.36 7.41 22.98 0.17 1.53 16 16 O -0.20 -4.07 10.58 -9.40 -0.10 -4.16 16 17 C 0.03 0.49 11.96 66.85 0.80 1.29 16 18 C -0.23 -5.05 11.14 23.54 0.26 -4.78 16 19 C -0.19 -5.42 6.38 -20.18 -0.13 -5.55 16 20 C 0.11 3.66 7.28 22.53 0.16 3.83 16 21 F -0.15 -5.47 16.56 44.97 0.74 -4.72 16 22 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 23 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 24 H -0.01 -0.72 8.14 -2.38 -0.02 -0.74 16 25 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 26 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 27 H 0.09 2.93 8.05 -2.39 -0.02 2.91 16 28 H 0.06 2.20 7.78 -2.39 -0.02 2.18 16 29 H 0.17 3.16 8.06 -2.91 -0.02 3.13 16 30 H 0.17 2.38 8.06 -2.91 -0.02 2.35 16 31 H 0.26 1.00 8.06 -2.91 -0.02 0.97 16 32 H 0.17 3.13 8.06 -2.91 -0.02 3.11 16 Total: -1.00 -72.28 286.77 6.83 -65.45 By element: Atomic # 1 Polarization: -0.18 SS G_CDS: 1.12 Total: 0.94 kcal Atomic # 6 Polarization: -50.00 SS G_CDS: 2.76 Total: -47.24 kcal Atomic # 7 Polarization: -57.80 SS G_CDS: 0.28 Total: -57.52 kcal Atomic # 8 Polarization: -4.07 SS G_CDS: -0.10 Total: -4.16 kcal Atomic # 9 Polarization: -5.47 SS G_CDS: 0.74 Total: -4.72 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Total: -72.28 6.83 -65.45 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259526841.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.984 kcal (2) G-P(sol) polarization free energy of solvation -72.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds