Wall clock time and date at job start Mon Mar 30 2020 06:14:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35950 * 116.99802 * 2 1 4 4 C 1.38309 * 120.07029 * 359.97438 * 3 2 1 5 5 C 1.38697 * 120.62465 * 179.97438 * 4 3 2 6 6 C 1.37733 * 120.32212 * 0.02843 * 5 4 3 7 7 C 1.39515 * 119.70451 * 359.97438 * 6 5 4 8 8 C 1.46776 * 134.29682 * 180.02562 * 7 6 5 9 9 C 1.34021 * 106.18886 * 179.23121 * 8 7 6 10 10 C 1.50695 * 124.93675 * 180.10715 * 9 8 7 11 11 H 1.09000 * 109.47161 * 340.69429 * 10 9 8 12 12 O 1.42901 * 109.46895 * 220.69773 * 10 9 8 13 13 C 1.50699 * 109.47646 * 100.69980 * 10 9 8 14 14 H 1.08004 * 119.99813 * 359.97438 * 13 10 9 15 15 C 1.37868 * 120.00455 * 180.02562 * 13 10 9 16 16 N 1.31521 * 120.00025 * 359.97438 * 15 13 10 17 17 Si 1.86799 * 120.00203 * 179.97438 * 15 13 10 18 18 H 1.48500 * 109.47337 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.47357 * 119.99825 * 17 15 13 20 20 H 1.48503 * 109.47329 * 239.99670 * 17 15 13 21 21 O 1.34423 * 110.12641 * 0.68984 * 9 8 7 22 22 C 1.34900 * 110.87533 * 359.37995 * 21 9 8 23 23 H 1.09001 * 109.46558 * 60.00252 * 1 2 3 24 24 H 1.09001 * 109.47103 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47187 * 300.00204 * 1 2 3 26 26 H 1.07992 * 119.68606 * 0.02991 * 4 3 2 27 27 H 1.07996 * 119.83762 * 180.02562 * 5 4 3 28 28 H 1.08003 * 120.14456 * 179.97438 * 6 5 4 29 29 H 1.08003 * 126.91073 * 359.97438 * 8 7 6 30 30 H 0.96702 * 114.00265 * 299.99468 * 12 10 9 31 31 H 0.97001 * 119.99834 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2943 2.3722 -0.0005 5 6 1.9120 3.6141 0.0000 6 6 3.2861 3.7072 0.0005 7 6 4.0579 2.5449 0.0010 8 6 5.5000 2.2721 0.0020 9 6 5.6279 0.9381 0.0193 10 6 6.9400 0.1970 0.0290 11 1 7.7334 0.8583 -0.3193 12 8 6.8524 -0.9379 -0.8349 13 6 7.2476 -0.2617 1.4311 14 1 6.5617 -0.0385 2.2350 15 6 8.4050 -0.9654 1.6880 16 7 9.2406 -1.2368 0.7092 17 14 8.7866 -1.5333 3.4262 18 1 7.6953 -1.1050 4.3377 19 1 8.8981 -3.0139 3.4500 20 1 10.0695 -0.9331 3.8727 21 8 4.4157 0.3571 0.0138 22 6 3.4375 1.2860 0.0064 23 1 -0.3632 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 0.2161 2.3111 -0.0005 27 1 1.3124 4.5123 0.0000 28 1 3.7641 4.6757 0.0005 29 1 6.2979 3.0000 0.0022 30 1 6.1654 -1.5708 -0.5845 31 1 10.0551 -1.7316 0.8901 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259591321.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:48 Heat of formation + Delta-G solvation = -82.010594 kcal Electronic energy + Delta-G solvation = -17518.519639 eV Core-core repulsion = 14538.013106 eV Total energy + Delta-G solvation = -2980.506533 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.088 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.39317 -40.46886 -38.02473 -37.48295 -34.42029 -33.48084 -31.37879 -30.70144 -28.73058 -27.89145 -25.18750 -23.86722 -22.35748 -22.01859 -19.29562 -19.02124 -18.43951 -17.62555 -17.27768 -16.78955 -16.40542 -16.27612 -16.03944 -15.33425 -15.09877 -14.50205 -14.23658 -13.80477 -13.53841 -13.29638 -13.16477 -13.01194 -12.83895 -12.36487 -12.21016 -12.17216 -12.14192 -11.64084 -10.89804 -10.71074 -10.51693 -9.45718 -8.77978 -8.24799 -6.54516 -0.00771 0.36543 1.36374 1.37911 1.44793 1.53556 1.79160 2.28395 2.35104 2.72154 2.99814 3.51377 3.86192 3.92201 4.07002 4.18354 4.34003 4.39480 4.41167 4.44278 4.55616 4.71856 4.75490 5.09868 5.18574 5.25230 5.41273 5.50081 5.53577 5.74796 5.82143 6.08995 6.48016 6.51986 7.11255 7.27468 8.78497 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.029130 B = 0.005952 C = 0.005618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.987723 B = 4703.064340 C = 4982.459002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.346 6.346 3 C 0.126 3.874 4 C -0.188 4.188 5 C -0.086 4.086 6 C -0.122 4.122 7 C -0.100 4.100 8 C -0.244 4.244 9 C 0.039 3.961 10 C 0.297 3.703 11 H 0.077 0.923 12 O -0.570 6.570 13 C -0.586 4.586 14 H 0.051 0.949 15 C 0.035 3.965 16 N -0.891 5.891 17 Si 0.969 3.031 18 H -0.271 1.271 19 H -0.273 1.273 20 H -0.268 1.268 21 O -0.206 6.206 22 C -0.029 4.029 23 H 0.075 0.925 24 H 0.115 0.885 25 H 0.073 0.927 26 H 0.176 0.824 27 H 0.176 0.824 28 H 0.153 0.847 29 H 0.171 0.829 30 H 0.362 0.638 31 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.325 8.382 -0.329 19.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.261 6.261 3 C 0.081 3.919 4 C -0.207 4.207 5 C -0.103 4.103 6 C -0.140 4.140 7 C -0.101 4.101 8 C -0.263 4.263 9 C -0.010 4.010 10 C 0.239 3.761 11 H 0.095 0.905 12 O -0.374 6.374 13 C -0.624 4.624 14 H 0.069 0.931 15 C -0.169 4.169 16 N -0.527 5.527 17 Si 0.792 3.208 18 H -0.195 1.195 19 H -0.199 1.199 20 H -0.193 1.193 21 O -0.108 6.108 22 C -0.076 4.076 23 H 0.093 0.907 24 H 0.133 0.867 25 H 0.092 0.908 26 H 0.193 0.807 27 H 0.194 0.806 28 H 0.170 0.830 29 H 0.188 0.812 30 H 0.208 0.792 31 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -16.648 8.131 -0.702 18.541 hybrid contribution 0.128 -0.682 1.000 1.217 sum -16.520 7.449 0.298 18.124 Atomic orbital electron populations 1.23437 0.75565 1.05747 1.02954 1.86142 1.24357 1.26625 1.88947 1.18075 0.86000 0.86882 1.00942 1.21353 1.01214 0.90040 1.08081 1.21263 0.93444 0.98183 0.97441 1.20816 0.93951 0.96456 1.02791 1.20079 0.92790 0.93728 1.03502 1.22409 0.95284 0.94833 1.13785 1.24377 0.85812 0.94081 0.96696 1.18244 0.83380 0.83922 0.90508 0.90548 1.86494 1.60085 1.35295 1.55494 1.21694 1.07464 1.39431 0.93769 0.93065 1.25855 0.94909 0.94521 1.01618 1.70172 1.11238 1.37883 1.33396 0.85370 0.78392 0.78264 0.78742 1.19533 1.19880 1.19319 1.83961 1.13900 1.36502 1.76454 1.19544 0.88893 0.88185 1.10987 0.90688 0.86706 0.90843 0.80682 0.80631 0.82963 0.81154 0.79199 0.92144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.81 113.37 1.11 1.40 16 2 O -0.35 -11.02 10.50 -92.99 -0.98 -12.00 16 3 C 0.13 4.22 6.70 22.55 0.15 4.37 16 4 C -0.19 -4.38 9.03 22.40 0.20 -4.18 16 5 C -0.09 -1.82 10.03 22.26 0.22 -1.59 16 6 C -0.12 -3.36 10.10 22.46 0.23 -3.14 16 7 C -0.10 -3.81 6.39 -20.22 -0.13 -3.94 16 8 C -0.24 -10.40 10.99 23.54 0.26 -10.14 16 9 C 0.04 1.92 6.04 24.72 0.15 2.07 16 10 C 0.30 16.23 3.27 29.10 0.10 16.32 16 11 H 0.08 4.33 8.12 -2.39 -0.02 4.31 16 12 O -0.57 -31.72 12.72 -145.62 -1.85 -33.57 16 13 C -0.59 -33.67 8.74 25.60 0.22 -33.45 16 14 H 0.05 2.98 7.74 -2.91 -0.02 2.96 16 15 C 0.04 1.97 5.40 84.65 0.46 2.42 16 16 N -0.89 -52.50 12.84 21.44 0.28 -52.22 16 17 Si 0.97 43.80 29.54 68.60 2.03 45.83 16 18 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 19 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 20 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 21 O -0.21 -10.13 10.46 -6.20 -0.06 -10.20 16 22 C -0.03 -1.23 7.35 23.05 0.17 -1.06 16 23 H 0.07 0.99 7.66 -2.39 -0.02 0.97 16 24 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 25 H 0.07 0.99 7.66 -2.39 -0.02 0.97 16 26 H 0.18 2.51 6.26 -2.91 -0.02 2.49 16 27 H 0.18 2.06 8.06 -2.91 -0.02 2.03 16 28 H 0.15 3.28 8.06 -2.91 -0.02 3.26 16 29 H 0.17 6.37 8.06 -2.91 -0.02 6.35 16 30 H 0.36 18.63 8.93 -74.06 -0.66 17.97 16 31 H 0.27 14.77 8.31 -92.71 -0.77 14.00 16 Total: -1.00 -72.79 278.21 3.05 -69.74 By element: Atomic # 1 Polarization: 22.82 SS G_CDS: 0.50 Total: 23.32 kcal Atomic # 6 Polarization: -34.05 SS G_CDS: 3.14 Total: -30.91 kcal Atomic # 7 Polarization: -52.50 SS G_CDS: 0.28 Total: -52.22 kcal Atomic # 8 Polarization: -52.87 SS G_CDS: -2.89 Total: -55.76 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -72.79 3.05 -69.74 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259591321.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.269 kcal (2) G-P(sol) polarization free energy of solvation -72.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds