Wall clock time and date at job start Mon Mar 30 2020 06:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35959 * 116.99885 * 2 1 4 4 C 1.38304 * 120.06753 * 359.97438 * 3 2 1 5 5 C 1.38695 * 120.62677 * 179.97438 * 4 3 2 6 6 C 1.37734 * 120.32127 * 0.02562 * 5 4 3 7 7 C 1.39517 * 119.70026 * 359.97438 * 6 5 4 8 8 C 1.46784 * 134.29462 * 179.97438 * 7 6 5 9 9 C 1.34004 * 106.18741 * 180.02562 * 8 7 6 10 10 C 1.50706 * 124.93198 * 179.97438 * 9 8 7 11 11 H 1.08994 * 109.46815 * 24.99963 * 10 9 8 12 12 O 1.42900 * 109.47081 * 144.99823 * 10 9 8 13 13 C 1.50699 * 109.47018 * 264.99482 * 10 9 8 14 14 H 1.08004 * 120.00040 * 0.02562 * 13 10 9 15 15 C 1.37871 * 120.00104 * 179.97438 * 13 10 9 16 16 N 1.31522 * 120.00013 * 0.02562 * 15 13 10 17 17 Si 1.86800 * 120.00257 * 180.02562 * 15 13 10 18 18 H 1.48500 * 109.47186 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.47194 * 120.00369 * 17 15 13 20 20 H 1.48507 * 109.47043 * 240.00363 * 17 15 13 21 21 O 1.34419 * 110.13575 * 359.97438 * 9 8 7 22 22 C 1.34891 * 110.87362 * 0.02562 * 21 9 8 23 23 H 1.09007 * 109.46921 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47410 * 300.00326 * 1 2 3 25 25 H 1.08996 * 109.47362 * 60.00727 * 1 2 3 26 26 H 1.08001 * 119.68497 * 0.25706 * 4 3 2 27 27 H 1.07996 * 119.83654 * 180.02562 * 5 4 3 28 28 H 1.07998 * 120.14942 * 180.02562 * 6 5 4 29 29 H 1.07997 * 126.90731 * 0.02562 * 8 7 6 30 30 H 0.96704 * 114.00042 * 59.99730 * 12 10 9 31 31 H 0.96996 * 119.99980 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2943 2.3722 -0.0005 5 6 1.9119 3.6141 0.0000 6 6 3.2860 3.7073 0.0005 7 6 4.0578 2.5450 0.0011 8 6 5.5000 2.2722 0.0012 9 6 5.6279 0.9382 0.0013 10 6 6.9401 0.1971 0.0009 11 1 7.7145 0.8294 0.4349 12 8 6.8124 -0.9980 0.7738 13 6 7.3160 -0.1579 -1.4146 14 1 6.6696 0.1252 -2.2322 15 6 8.4857 -0.8432 -1.6660 16 7 9.2731 -1.1876 -0.6704 17 14 8.9520 -1.2827 -3.4207 18 1 7.9063 -0.7852 -4.3502 19 1 10.2541 -0.6540 -3.7590 20 1 9.0668 -2.7579 -3.5477 21 8 4.4157 0.3572 0.0017 22 6 3.4375 1.2860 0.0014 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5137 -0.8900 26 1 0.2160 2.3110 0.0033 27 1 1.3123 4.5123 0.0000 28 1 3.7640 4.6758 0.0014 29 1 6.2978 3.0001 0.0013 30 1 6.1393 -1.6093 0.4446 31 1 10.0958 -1.6700 -0.8473 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259591326.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:50 Heat of formation + Delta-G solvation = -59.348194 kcal Electronic energy + Delta-G solvation = -17515.111111 eV Core-core repulsion = 14535.587293 eV Total energy + Delta-G solvation = -2979.523818 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.088 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.90469 -39.29006 -36.67459 -35.61148 -32.31527 -31.94765 -30.03879 -29.29294 -27.41175 -26.41064 -23.39375 -22.51575 -21.02842 -20.41289 -17.74792 -17.21946 -17.11603 -16.07728 -15.93871 -15.09711 -14.99228 -14.84369 -14.69795 -13.75441 -13.16662 -13.04435 -12.95429 -12.21798 -12.14432 -12.08044 -11.44428 -11.23446 -11.12489 -11.11161 -11.06947 -10.97309 -10.27233 -9.62523 -9.29148 -8.77389 -8.56917 -8.00771 -7.43055 -6.16345 -4.37094 1.30746 1.62091 3.00779 3.20710 3.22604 3.30682 3.35157 3.38395 3.96822 4.30805 4.88350 4.94597 5.06591 5.10016 5.11778 5.16952 5.40926 5.44446 5.52459 5.80535 5.93968 6.12164 6.21348 6.34052 6.52724 6.69840 6.78546 6.97245 7.15607 7.41506 7.68165 7.84324 7.92231 8.64559 9.14883 9.38476 10.86969 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.029561 B = 0.005906 C = 0.005602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.966141 B = 4739.539314 C = 4997.074027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.313 6.313 3 C 0.146 3.854 4 C -0.210 4.210 5 C -0.102 4.102 6 C -0.119 4.119 7 C -0.077 4.077 8 C -0.255 4.255 9 C 0.079 3.921 10 C 0.295 3.705 11 H 0.096 0.904 12 O -0.556 6.556 13 C -0.571 4.571 14 H 0.063 0.937 15 C 0.082 3.918 16 N -0.856 5.856 17 Si 0.900 3.100 18 H -0.271 1.271 19 H -0.280 1.280 20 H -0.280 1.280 21 O -0.178 6.178 22 C 0.011 3.989 23 H 0.098 0.902 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.133 0.867 27 H 0.126 0.874 28 H 0.125 0.875 29 H 0.156 0.844 30 H 0.357 0.643 31 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.638 6.446 1.055 16.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.227 6.227 3 C 0.101 3.899 4 C -0.229 4.229 5 C -0.121 4.121 6 C -0.137 4.137 7 C -0.078 4.078 8 C -0.274 4.274 9 C 0.030 3.970 10 C 0.237 3.763 11 H 0.113 0.887 12 O -0.359 6.359 13 C -0.609 4.609 14 H 0.081 0.919 15 C -0.125 4.125 16 N -0.491 5.491 17 Si 0.726 3.274 18 H -0.195 1.195 19 H -0.206 1.206 20 H -0.206 1.206 21 O -0.079 6.079 22 C -0.036 4.036 23 H 0.117 0.883 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.150 0.850 27 H 0.143 0.857 28 H 0.143 0.857 29 H 0.173 0.827 30 H 0.202 0.798 31 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -13.962 6.157 1.475 15.330 hybrid contribution -0.404 -0.104 -1.352 1.415 sum -14.366 6.053 0.123 15.589 Atomic orbital electron populations 1.23034 0.78652 1.03829 1.01140 1.86183 1.21098 1.26507 1.88893 1.17711 0.86848 0.85206 1.00126 1.20749 0.99295 0.91208 1.11607 1.20638 0.94070 0.96593 1.00750 1.20369 0.92912 0.96761 1.03681 1.19855 0.93707 0.92516 1.01729 1.22075 0.93417 0.95561 1.16313 1.25004 0.86106 0.93429 0.92467 1.18590 0.81703 0.83060 0.92944 0.88721 1.86559 1.61600 1.31751 1.55953 1.21494 1.07581 1.40166 0.91613 0.91906 1.25018 0.95475 0.94446 0.97576 1.70070 1.11888 1.36412 1.30764 0.86428 0.78538 0.78356 0.84056 1.19511 1.20587 1.20587 1.84070 1.13460 1.35065 1.75278 1.18795 0.87721 0.88020 1.09103 0.88327 0.92744 0.92723 0.84957 0.85655 0.85722 0.82663 0.79775 0.92531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.81 101.05 0.99 1.28 16 2 O -0.31 -5.10 10.50 -19.61 -0.21 -5.31 16 3 C 0.15 2.53 6.70 -39.15 -0.26 2.27 16 4 C -0.21 -2.89 9.03 -39.39 -0.36 -3.25 16 5 C -0.10 -1.35 10.03 -39.60 -0.40 -1.75 16 6 C -0.12 -1.83 10.10 -39.29 -0.40 -2.23 16 7 C -0.08 -1.48 6.39 -105.17 -0.67 -2.15 16 8 C -0.25 -5.26 11.00 -37.62 -0.41 -5.67 16 9 C 0.08 1.84 6.07 -35.79 -0.22 1.62 16 10 C 0.30 7.57 3.26 -29.03 -0.09 7.47 16 11 H 0.10 2.50 8.13 -51.93 -0.42 2.08 16 12 O -0.56 -14.55 12.70 -41.57 -0.53 -15.08 16 13 C -0.57 -15.64 8.74 -34.44 -0.30 -15.94 16 14 H 0.06 1.74 7.74 -52.48 -0.41 1.33 16 15 C 0.08 2.25 5.40 -17.82 -0.10 2.15 16 16 N -0.86 -24.50 12.84 55.43 0.71 -23.79 16 17 Si 0.90 20.92 29.54 -169.99 -5.02 15.90 16 18 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 19 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 21 O -0.18 -4.11 10.39 -2.63 -0.03 -4.14 16 22 C 0.01 0.23 7.35 -38.38 -0.28 -0.05 16 23 H 0.10 0.79 8.14 -51.92 -0.42 0.37 16 24 H 0.05 0.46 7.65 -51.93 -0.40 0.07 16 25 H 0.05 0.47 7.66 -51.93 -0.40 0.08 16 26 H 0.13 1.36 6.26 -52.49 -0.33 1.04 16 27 H 0.13 1.22 8.06 -52.49 -0.42 0.79 16 28 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 29 H 0.16 2.85 8.06 -52.49 -0.42 2.42 16 30 H 0.36 8.53 8.88 45.56 0.40 8.93 16 31 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 278.12 15.07 4.19 4.19 Total: -1.00 -31.56 278.12 -5.75 -37.31 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -2.37 Total: 7.15 kcal Atomic # 6 Polarization: -13.74 SS G_CDS: -2.50 Total: -16.24 kcal Atomic # 7 Polarization: -24.50 SS G_CDS: 0.71 Total: -23.79 kcal Atomic # 8 Polarization: -23.77 SS G_CDS: -0.76 Total: -24.53 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -31.56 -5.75 -37.31 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259591326.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.034 kcal (2) G-P(sol) polarization free energy of solvation -31.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds