Wall clock time and date at job start Mon Mar 30 2020 06:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35959 * 116.99885 * 2 1 4 4 C 1.38304 * 120.06753 * 359.97438 * 3 2 1 5 5 C 1.38695 * 120.62677 * 179.97438 * 4 3 2 6 6 C 1.37734 * 120.32127 * 0.02562 * 5 4 3 7 7 C 1.39517 * 119.70026 * 359.97438 * 6 5 4 8 8 C 1.46784 * 134.29462 * 179.97438 * 7 6 5 9 9 C 1.34004 * 106.18741 * 180.02562 * 8 7 6 10 10 C 1.50706 * 124.93198 * 179.97438 * 9 8 7 11 11 H 1.08994 * 109.46815 * 24.99963 * 10 9 8 12 12 O 1.42900 * 109.47081 * 144.99823 * 10 9 8 13 13 C 1.50699 * 109.47018 * 264.99482 * 10 9 8 14 14 H 1.08004 * 120.00040 * 0.02562 * 13 10 9 15 15 C 1.37871 * 120.00104 * 179.97438 * 13 10 9 16 16 N 1.31522 * 120.00013 * 0.02562 * 15 13 10 17 17 Si 1.86800 * 120.00257 * 180.02562 * 15 13 10 18 18 H 1.48500 * 109.47186 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.47194 * 120.00369 * 17 15 13 20 20 H 1.48507 * 109.47043 * 240.00363 * 17 15 13 21 21 O 1.34419 * 110.13575 * 359.97438 * 9 8 7 22 22 C 1.34891 * 110.87362 * 0.02562 * 21 9 8 23 23 H 1.09007 * 109.46921 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47410 * 300.00326 * 1 2 3 25 25 H 1.08996 * 109.47362 * 60.00727 * 1 2 3 26 26 H 1.08001 * 119.68497 * 0.25706 * 4 3 2 27 27 H 1.07996 * 119.83654 * 180.02562 * 5 4 3 28 28 H 1.07998 * 120.14942 * 180.02562 * 6 5 4 29 29 H 1.07997 * 126.90731 * 0.02562 * 8 7 6 30 30 H 0.96704 * 114.00042 * 59.99730 * 12 10 9 31 31 H 0.96996 * 119.99980 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2943 2.3722 -0.0005 5 6 1.9119 3.6141 0.0000 6 6 3.2860 3.7073 0.0005 7 6 4.0578 2.5450 0.0011 8 6 5.5000 2.2722 0.0012 9 6 5.6279 0.9382 0.0013 10 6 6.9401 0.1971 0.0009 11 1 7.7145 0.8294 0.4349 12 8 6.8124 -0.9980 0.7738 13 6 7.3160 -0.1579 -1.4146 14 1 6.6696 0.1252 -2.2322 15 6 8.4857 -0.8432 -1.6660 16 7 9.2731 -1.1876 -0.6704 17 14 8.9520 -1.2827 -3.4207 18 1 7.9063 -0.7852 -4.3502 19 1 10.2541 -0.6540 -3.7590 20 1 9.0668 -2.7579 -3.5477 21 8 4.4157 0.3572 0.0017 22 6 3.4375 1.2860 0.0014 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5137 -0.8900 26 1 0.2160 2.3110 0.0033 27 1 1.3123 4.5123 0.0000 28 1 3.7640 4.6758 0.0014 29 1 6.2978 3.0001 0.0013 30 1 6.1393 -1.6093 0.4446 31 1 10.0958 -1.6700 -0.8473 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259591326.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:50 Heat of formation + Delta-G solvation = -81.922231 kcal Electronic energy + Delta-G solvation = -17516.089995 eV Core-core repulsion = 14535.587293 eV Total energy + Delta-G solvation = -2980.502702 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.088 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.39491 -40.46826 -38.02523 -37.48171 -34.42201 -33.48510 -31.37439 -30.70704 -28.71762 -27.88798 -25.19581 -23.86318 -22.35712 -22.01406 -19.30695 -19.01647 -18.43874 -17.62453 -17.27608 -16.78824 -16.40544 -16.27707 -16.03625 -15.32869 -15.09885 -14.50554 -14.23584 -13.81093 -13.53340 -13.29460 -13.16268 -13.01612 -12.83836 -12.36587 -12.20966 -12.17007 -12.13973 -11.63169 -10.90788 -10.70917 -10.51601 -9.45250 -8.77820 -8.24575 -6.54552 -0.00585 0.36555 1.36647 1.38252 1.45154 1.53867 1.78666 2.28380 2.35381 2.72210 2.99826 3.51403 3.86340 3.92231 4.06003 4.18812 4.34052 4.39872 4.41265 4.44824 4.55705 4.72007 4.76074 5.09892 5.18625 5.25372 5.41454 5.50305 5.53720 5.75173 5.81685 6.08337 6.47505 6.52460 7.11556 7.27545 8.78625 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.029561 B = 0.005906 C = 0.005602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.966141 B = 4739.539314 C = 4997.074027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.346 6.346 3 C 0.127 3.873 4 C -0.189 4.189 5 C -0.086 4.086 6 C -0.122 4.122 7 C -0.100 4.100 8 C -0.244 4.244 9 C 0.039 3.961 10 C 0.297 3.703 11 H 0.076 0.924 12 O -0.570 6.570 13 C -0.586 4.586 14 H 0.052 0.948 15 C 0.035 3.965 16 N -0.891 5.891 17 Si 0.969 3.031 18 H -0.270 1.270 19 H -0.268 1.268 20 H -0.274 1.274 21 O -0.206 6.206 22 C -0.029 4.029 23 H 0.115 0.885 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.176 0.824 27 H 0.176 0.824 28 H 0.152 0.848 29 H 0.170 0.830 30 H 0.363 0.637 31 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.340 8.342 0.192 19.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.261 6.261 3 C 0.081 3.919 4 C -0.207 4.207 5 C -0.103 4.103 6 C -0.140 4.140 7 C -0.101 4.101 8 C -0.263 4.263 9 C -0.010 4.010 10 C 0.240 3.760 11 H 0.094 0.906 12 O -0.374 6.374 13 C -0.623 4.623 14 H 0.070 0.930 15 C -0.169 4.169 16 N -0.527 5.527 17 Si 0.793 3.207 18 H -0.195 1.195 19 H -0.193 1.193 20 H -0.199 1.199 21 O -0.108 6.108 22 C -0.076 4.076 23 H 0.133 0.867 24 H 0.093 0.907 25 H 0.092 0.908 26 H 0.193 0.807 27 H 0.194 0.806 28 H 0.170 0.830 29 H 0.188 0.812 30 H 0.208 0.792 31 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -16.682 8.064 0.616 18.539 hybrid contribution 0.182 -0.605 -1.029 1.208 sum -16.500 7.459 -0.414 18.112 Atomic orbital electron populations 1.23435 0.75566 1.05750 1.02952 1.86143 1.24355 1.26618 1.88950 1.18072 0.85990 0.86880 1.00934 1.21353 1.01216 0.90039 1.08094 1.21261 0.93436 0.98188 0.97435 1.20815 0.93955 0.96454 1.02811 1.20082 0.92782 0.93736 1.03483 1.22378 0.95247 0.94840 1.13839 1.24385 0.85778 0.94119 0.96703 1.18251 0.83186 0.82688 0.91905 0.90645 1.86489 1.62059 1.32474 1.56377 1.21690 1.07790 1.40557 0.92244 0.92963 1.25861 0.95167 0.94062 1.01824 1.70173 1.12420 1.37132 1.32992 0.85361 0.78392 0.78245 0.78718 1.19476 1.19349 1.19900 1.83954 1.13877 1.36496 1.76492 1.19534 0.88884 0.88177 1.11021 0.86698 0.90704 0.90836 0.80677 0.80636 0.82986 0.81226 0.79192 0.92146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.81 113.37 1.11 1.40 16 2 O -0.35 -10.99 10.50 -93.09 -0.98 -11.97 16 3 C 0.13 4.22 6.70 22.55 0.15 4.38 16 4 C -0.19 -4.38 9.03 22.39 0.20 -4.18 16 5 C -0.09 -1.82 10.03 22.26 0.22 -1.59 16 6 C -0.12 -3.38 10.10 22.46 0.23 -3.15 16 7 C -0.10 -3.81 6.39 -20.22 -0.13 -3.94 16 8 C -0.24 -10.43 11.00 23.54 0.26 -10.17 16 9 C 0.04 1.91 6.07 24.72 0.15 2.06 16 10 C 0.30 16.25 3.26 29.10 0.09 16.34 16 11 H 0.08 4.29 8.13 -2.39 -0.02 4.27 16 12 O -0.57 -31.78 12.70 -142.92 -1.82 -33.60 16 13 C -0.59 -33.52 8.74 25.60 0.22 -33.29 16 14 H 0.05 3.02 7.74 -2.91 -0.02 3.00 16 15 C 0.03 1.95 5.40 84.65 0.46 2.41 16 16 N -0.89 -52.49 12.84 21.45 0.28 -52.21 16 17 Si 0.97 43.69 29.54 68.60 2.03 45.71 16 18 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 19 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 20 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 21 O -0.21 -10.11 10.39 -3.36 -0.03 -10.15 16 22 C -0.03 -1.23 7.35 23.05 0.17 -1.07 16 23 H 0.11 1.57 8.14 -2.38 -0.02 1.55 16 24 H 0.07 0.98 7.65 -2.39 -0.02 0.96 16 25 H 0.07 0.99 7.66 -2.39 -0.02 0.97 16 26 H 0.18 2.51 6.26 -2.91 -0.02 2.49 16 27 H 0.18 2.06 8.06 -2.91 -0.02 2.04 16 28 H 0.15 3.29 8.06 -2.91 -0.02 3.27 16 29 H 0.17 6.40 8.06 -2.91 -0.02 6.38 16 30 H 0.36 18.66 8.88 -74.05 -0.66 18.00 16 31 H 0.27 14.76 8.31 -92.71 -0.77 13.99 16 Total: -1.00 -72.64 278.12 3.12 -69.52 By element: Atomic # 1 Polarization: 22.98 SS G_CDS: 0.51 Total: 23.49 kcal Atomic # 6 Polarization: -33.95 SS G_CDS: 3.14 Total: -30.81 kcal Atomic # 7 Polarization: -52.49 SS G_CDS: 0.28 Total: -52.21 kcal Atomic # 8 Polarization: -52.88 SS G_CDS: -2.83 Total: -55.71 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.71 kcal Total: -72.64 3.12 -69.52 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259591326.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.398 kcal (2) G-P(sol) polarization free energy of solvation -72.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds