Wall clock time and date at job start Mon Mar 30 2020 06:19:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36876 * 126.40093 * 2 1 4 4 C 1.34665 * 106.82156 * 180.12098 * 3 2 1 5 5 N 1.34127 * 108.01668 * 359.58498 * 4 3 2 6 6 C 1.30500 * 109.25894 * 0.26753 * 5 4 3 7 7 C 1.50704 * 125.64894 * 179.97438 * 6 5 4 8 8 C 1.53000 * 109.46945 * 90.02092 * 7 6 5 9 9 H 1.08998 * 109.47655 * 305.00107 * 8 7 6 10 10 C 1.50697 * 109.47085 * 184.99577 * 8 7 6 11 11 H 1.08002 * 120.00115 * 0.02562 * 10 8 7 12 12 C 1.37877 * 120.00253 * 179.97438 * 10 8 7 13 13 N 1.31513 * 119.99937 * 0.02562 * 12 10 8 14 14 Si 1.86804 * 120.00023 * 180.02562 * 12 10 8 15 15 H 1.48492 * 109.47191 * 60.00458 * 14 12 10 16 16 H 1.48505 * 109.46900 * 180.02562 * 14 12 10 17 17 H 1.48492 * 109.47172 * 300.00064 * 14 12 10 18 18 C 1.53007 * 109.47158 * 64.99873 * 8 7 6 19 19 F 1.39907 * 109.46932 * 59.99813 * 18 8 7 20 20 F 1.39897 * 109.47175 * 179.97438 * 18 8 7 21 21 F 1.39901 * 109.46996 * 299.99652 * 18 8 7 22 22 H 1.09003 * 109.47232 * 270.34385 * 1 2 3 23 23 H 1.08992 * 109.46613 * 30.34423 * 1 2 3 24 24 H 1.08997 * 109.47054 * 150.34494 * 1 2 3 25 25 H 1.08002 * 126.59064 * 0.02562 * 3 2 1 26 26 H 1.08002 * 125.99463 * 179.85418 * 4 3 2 27 27 H 1.08997 * 109.46911 * 210.01824 * 7 6 5 28 28 H 1.08994 * 109.46872 * 330.02168 * 7 6 5 29 29 H 0.96995 * 120.00174 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2773 1.1017 0.0000 4 6 3.5461 0.6504 -0.0027 5 7 3.5095 -0.6903 0.0049 6 6 2.2663 -1.0870 0.0065 7 6 1.8018 -2.5207 0.0139 8 6 1.6435 -2.9981 1.4588 9 1 2.5779 -2.8412 1.9978 10 6 1.2983 -4.4649 1.4683 11 1 1.2019 -5.0030 0.5369 12 6 1.1066 -5.1204 2.6661 13 7 1.2245 -4.4653 3.8003 14 14 0.6794 -6.9389 2.6778 15 1 1.7660 -7.7068 2.0186 16 1 0.5257 -7.4022 4.0803 17 1 -0.5936 -7.1530 1.9439 18 6 0.5241 -2.2063 2.1378 19 9 -0.6753 -2.4077 1.4461 20 9 0.3790 -2.6432 3.4589 21 9 0.8445 -0.8445 2.1291 22 1 -0.3634 0.0062 1.0277 23 1 -0.3632 0.8868 -0.5191 24 1 -0.3633 -0.8930 -0.5085 25 1 1.9614 2.1345 0.0004 26 1 4.4369 1.2610 -0.0057 27 1 0.8436 -2.5948 -0.5003 28 1 2.5369 -3.1433 -0.4960 29 1 1.0893 -4.9262 4.6430 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259607904.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:37 Heat of formation + Delta-G solvation = -79.533595 kcal Electronic energy + Delta-G solvation = -19578.964090 eV Core-core repulsion = 16089.000978 eV Total energy + Delta-G solvation = -3489.963112 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.083 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -50.55141 -48.10293 -47.72046 -42.84838 -36.47515 -34.80140 -33.83386 -30.39202 -27.93305 -26.93065 -26.33703 -22.87587 -22.18189 -20.58376 -19.32454 -18.75635 -18.64413 -17.70301 -17.44393 -16.69280 -16.36575 -15.46416 -15.24494 -14.95809 -14.70066 -14.56498 -14.33370 -14.17221 -13.97256 -13.83790 -13.62235 -13.37929 -13.19306 -12.87495 -12.70184 -12.51606 -11.94455 -11.78977 -11.30812 -10.84733 -10.58195 -10.40610 -9.15815 -8.14126 -6.41297 1.21454 1.46707 1.48218 1.56285 2.05367 2.26914 2.39520 2.48960 2.99312 3.58887 3.78802 3.88479 3.96337 4.00137 4.04254 4.32327 4.44299 4.62731 4.66863 4.71003 4.83531 5.08279 5.29196 5.49398 5.66807 5.89346 5.98672 6.34474 6.63494 7.28291 7.28764 8.78382 Molecular weight = 248.08amu Principal moments of inertia in cm(-1) A = 0.037086 B = 0.008833 C = 0.008227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.817592 B = 3169.173063 C = 3402.632084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.052 3.948 2 N -0.446 5.446 3 C -0.053 4.053 4 C -0.061 4.061 5 N -0.532 5.532 6 C 0.194 3.806 7 C -0.020 4.020 8 C 0.024 3.976 9 H 0.031 0.969 10 C -0.550 4.550 11 H 0.082 0.918 12 C 0.012 3.988 13 N -0.879 5.879 14 Si 0.970 3.030 15 H -0.264 1.264 16 H -0.286 1.286 17 H -0.266 1.266 18 C 0.431 3.569 19 F -0.199 7.199 20 F -0.158 7.158 21 F -0.212 7.212 22 H 0.079 0.921 23 H 0.116 0.884 24 H 0.086 0.914 25 H 0.210 0.790 26 H 0.188 0.812 27 H 0.090 0.910 28 H 0.099 0.901 29 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.388 8.144 -6.572 11.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 N -0.127 5.127 3 C -0.187 4.187 4 C -0.208 4.208 5 N -0.252 5.252 6 C -0.069 4.069 7 C -0.059 4.059 8 C 0.003 3.997 9 H 0.049 0.951 10 C -0.586 4.586 11 H 0.100 0.900 12 C -0.192 4.192 13 N -0.514 5.514 14 Si 0.795 3.205 15 H -0.189 1.189 16 H -0.212 1.212 17 H -0.191 1.191 18 C 0.376 3.624 19 F -0.181 7.181 20 F -0.139 7.139 21 F -0.194 7.194 22 H 0.098 0.902 23 H 0.134 0.866 24 H 0.105 0.895 25 H 0.227 0.773 26 H 0.205 0.795 27 H 0.109 0.891 28 H 0.118 0.882 29 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.915 7.644 -6.347 10.354 hybrid contribution -0.926 -0.068 0.655 1.136 sum -3.842 7.576 -5.692 10.225 Atomic orbital electron populations 1.22638 0.75705 1.05876 1.04785 1.45405 1.08416 1.06254 1.52645 1.23213 0.90785 0.93630 1.11083 1.22727 0.98016 0.90642 1.09461 1.70151 1.19662 1.13769 1.21624 1.23341 0.86154 0.91707 1.05686 1.19998 1.02421 0.86464 0.97011 1.19722 0.91842 0.95734 0.92433 0.95084 1.21135 1.50916 0.92535 0.94054 0.90010 1.25978 0.94533 1.03503 0.95155 1.70523 1.46046 1.36641 0.98214 0.85406 0.79251 0.78727 0.77165 1.18892 1.21161 1.19109 1.22654 0.84614 0.76088 0.79049 1.92982 1.50268 1.94948 1.79886 1.93376 1.96004 1.87709 1.36784 1.92990 1.92753 1.37142 1.96518 0.90245 0.86584 0.89522 0.77300 0.79506 0.89125 0.88217 0.92695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.37 8.91 127.77 1.14 2.51 15 2 N -0.45 -14.78 2.12 -537.61 -1.14 -15.92 15 3 C -0.05 -1.55 11.58 83.09 0.96 -0.58 15 4 C -0.06 -2.03 11.87 83.52 0.99 -1.03 15 5 N -0.53 -22.20 11.25 -188.13 -2.12 -24.32 15 6 C 0.19 7.72 5.92 138.13 0.82 8.54 15 7 C -0.02 -0.82 4.88 29.85 0.15 -0.67 15 8 C 0.02 1.16 2.02 -11.54 -0.02 1.14 15 9 H 0.03 1.76 8.14 -2.39 -0.02 1.74 15 10 C -0.55 -28.44 8.30 25.60 0.21 -28.23 15 11 H 0.08 3.98 7.74 -2.91 -0.02 3.96 15 12 C 0.01 0.63 5.20 84.65 0.44 1.07 15 13 N -0.88 -49.60 9.50 21.45 0.20 -49.40 15 14 Si 0.97 41.63 29.54 68.60 2.03 43.65 15 15 H -0.26 -10.90 7.11 99.48 0.71 -10.20 15 16 H -0.29 -12.20 7.11 99.48 0.71 -11.50 15 17 H -0.27 -11.01 7.11 99.48 0.71 -10.30 15 18 C 0.43 20.65 2.39 71.98 0.17 20.82 15 19 F -0.20 -8.78 14.75 44.97 0.66 -8.12 15 20 F -0.16 -8.66 12.91 44.97 0.58 -8.08 15 21 F -0.21 -9.36 10.81 44.97 0.49 -8.87 15 22 H 0.08 2.38 5.46 -2.39 -0.01 2.37 15 23 H 0.12 2.10 8.14 -2.39 -0.02 2.08 15 24 H 0.09 2.30 6.59 -2.39 -0.02 2.29 15 25 H 0.21 3.98 8.06 -2.91 -0.02 3.95 15 26 H 0.19 4.93 8.06 -2.91 -0.02 4.91 15 27 H 0.09 3.34 6.59 -2.39 -0.02 3.33 15 28 H 0.10 4.02 8.14 -2.39 -0.02 4.00 15 29 H 0.26 14.22 8.31 -92.71 -0.77 13.45 15 Total: -1.00 -64.15 248.49 6.74 -57.41 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: 1.18 Total: 10.07 kcal Atomic # 6 Polarization: -1.29 SS G_CDS: 4.86 Total: 3.57 kcal Atomic # 7 Polarization: -86.59 SS G_CDS: -3.05 Total: -89.64 kcal Atomic # 9 Polarization: -26.79 SS G_CDS: 1.73 Total: -25.06 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.65 kcal Total: -64.15 6.74 -57.41 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259607904.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.121 kcal (2) G-P(sol) polarization free energy of solvation -64.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds