Wall clock time and date at job start Mon Mar 30 2020 06:00:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.40080 * 126.43314 * 2 1 4 4 C 1.35297 * 107.84114 * 180.29060 * 3 2 1 5 5 N 1.36041 * 108.80384 * 359.73864 * 4 3 2 6 6 C 1.46503 * 125.68393 * 180.02562 * 5 4 3 7 7 C 1.37458 * 108.63186 * 0.02562 * 5 4 3 8 8 C 1.46883 * 126.20184 * 179.97438 * 7 5 4 9 9 N 1.30210 * 125.07579 * 180.24707 * 8 7 5 10 10 C 1.32699 * 115.94240 * 180.20100 * 9 8 7 11 11 C 1.41150 * 122.76490 * 179.80629 * 10 9 8 12 12 H 1.08001 * 119.99805 * 22.56335 * 11 10 9 13 13 C 1.39530 * 120.00440 * 202.56974 * 11 10 9 14 14 N 1.31123 * 119.99937 * 199.42578 * 13 11 10 15 15 Si 1.86800 * 119.99982 * 19.14289 * 13 11 10 16 16 H 1.48491 * 109.47482 * 264.24691 * 15 13 11 17 17 H 1.48500 * 109.46739 * 24.24887 * 15 13 11 18 18 H 1.48497 * 109.47042 * 144.24087 * 15 13 11 19 19 C 1.38048 * 114.47944 * 359.53847 * 10 9 8 20 20 S 1.70988 * 108.94053 * 0.24570 * 19 10 9 21 21 H 1.09008 * 109.46760 * 270.15143 * 1 2 3 22 22 H 1.08997 * 109.47716 * 30.15236 * 1 2 3 23 23 H 1.09003 * 109.47389 * 150.15892 * 1 2 3 24 24 H 1.07996 * 126.08417 * 0.04818 * 3 2 1 25 25 H 1.08001 * 125.59883 * 179.76733 * 4 3 2 26 26 H 1.09000 * 109.47395 * 269.97905 * 6 5 4 27 27 H 1.09006 * 109.47017 * 29.97834 * 6 5 4 28 28 H 1.08997 * 109.47383 * 149.97368 * 6 5 4 29 29 H 0.96997 * 119.99612 * 353.33094 * 14 13 11 30 30 H 1.08000 * 125.53128 * 180.22311 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3389 1.1270 0.0000 4 6 3.6212 0.6957 -0.0065 5 7 3.6263 -0.6647 -0.0048 6 6 4.8194 -1.5149 -0.0097 7 6 2.3254 -1.1087 0.0024 8 6 1.8872 -2.5107 0.0060 9 7 0.6469 -2.9069 0.0082 10 6 0.4571 -4.2203 0.0155 11 6 -0.8269 -4.8065 0.0228 12 1 -1.6781 -4.2469 -0.3361 13 6 -0.9966 -6.1089 0.4937 14 7 -2.0670 -6.7909 0.1643 15 14 0.3049 -6.8839 1.5868 16 1 1.2270 -7.6996 0.7566 17 1 1.0728 -5.8156 2.2756 18 1 -0.3506 -7.7523 2.5974 19 6 1.6187 -4.9662 0.0094 20 16 2.9595 -3.9051 0.0009 21 1 -0.3633 0.0027 1.0278 22 1 -0.3634 0.8886 -0.5162 23 1 -0.3634 -0.8914 -0.5114 24 1 2.0145 2.1571 0.0007 25 1 4.4971 1.3276 -0.0118 26 1 5.1099 -1.7274 -1.0386 27 1 5.6345 -1.0001 0.4990 28 1 4.6017 -2.4497 0.5068 29 1 -2.7852 -6.3598 -0.3249 30 1 1.6719 -6.0449 0.0103 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259650851.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:56 Heat of formation + Delta-G solvation = 76.873621 kcal Electronic energy + Delta-G solvation = -15413.353309 eV Core-core repulsion = 12914.782134 eV Total energy + Delta-G solvation = -2498.571175 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.068 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.86272 -38.06915 -33.67810 -33.33663 -30.91712 -28.96714 -27.58026 -25.48489 -25.02326 -23.11788 -20.19977 -19.84701 -18.22298 -17.60258 -16.89079 -15.77992 -15.26670 -14.59675 -14.17639 -13.52575 -13.24785 -13.14716 -12.88503 -12.66437 -12.49035 -12.33292 -11.98197 -11.68652 -11.64637 -11.05257 -10.80718 -10.48084 -9.96093 -9.58066 -9.14471 -8.58994 -8.57088 -8.20218 -8.15870 -7.36490 -6.95113 -4.59045 1.42099 2.40149 2.70478 3.01276 3.13360 3.23324 3.27336 3.34627 3.56811 4.04245 4.09430 4.79404 4.87010 5.19824 5.22571 5.25846 5.52475 5.68751 5.77976 6.06928 6.23714 6.37159 6.45659 6.58839 6.71246 6.90492 7.06519 7.25491 7.41820 7.54322 7.58372 8.07243 8.28062 8.60969 9.13693 10.04757 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.033322 B = 0.007640 C = 0.006450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.083289 B = 3663.847229 C = 4340.306157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.109 4.109 3 C -0.202 4.202 4 C -0.005 4.005 5 N -0.440 5.440 6 C 0.065 3.935 7 C 0.074 3.926 8 C 0.128 3.872 9 N -0.452 5.452 10 C 0.220 3.780 11 C -0.475 4.475 12 H 0.082 0.918 13 C 0.047 3.953 14 N -0.819 5.819 15 Si 1.076 2.924 16 H -0.281 1.281 17 H -0.262 1.262 18 H -0.291 1.291 19 C -0.465 4.465 20 S 0.010 5.990 21 H 0.059 0.941 22 H 0.051 0.949 23 H 0.083 0.917 24 H 0.137 0.863 25 H 0.163 0.837 26 H 0.076 0.924 27 H 0.086 0.914 28 H 0.090 0.910 29 H 0.286 0.714 30 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.393 10.178 0.634 15.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.120 4.120 3 C -0.227 4.227 4 C -0.138 4.138 5 N -0.116 5.116 6 C -0.078 4.078 7 C -0.039 4.039 8 C -0.150 4.150 9 N -0.169 5.169 10 C 0.097 3.903 11 C -0.509 4.509 12 H 0.100 0.900 13 C -0.172 4.172 14 N -0.443 5.443 15 Si 0.904 3.096 16 H -0.208 1.208 17 H -0.187 1.187 18 H -0.219 1.219 19 C -0.603 4.603 20 S 0.261 5.739 21 H 0.078 0.922 22 H 0.070 0.930 23 H 0.102 0.898 24 H 0.154 0.846 25 H 0.180 0.820 26 H 0.095 0.905 27 H 0.105 0.895 28 H 0.108 0.892 29 H 0.097 0.903 30 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 12.616 8.633 1.332 15.345 hybrid contribution -1.222 0.803 -0.885 1.709 sum 11.394 9.436 0.447 14.801 Atomic orbital electron populations 1.20229 0.89549 1.02436 1.01713 1.19851 0.95702 0.90501 1.05929 1.20672 0.91853 0.98291 1.11929 1.21734 0.99122 0.82141 1.10759 1.43825 1.05039 1.06236 1.56505 1.22219 0.86104 0.95676 1.03756 1.17696 0.82779 0.89744 1.13710 1.24356 0.91754 0.93249 1.05657 1.67210 1.17182 1.16510 1.15984 1.17940 0.94457 0.84304 0.93636 1.19861 0.92833 1.00034 1.38219 0.89960 1.27074 1.01134 0.93423 0.95591 1.70656 1.07214 1.37137 1.29257 0.83489 0.73832 0.76115 0.76213 1.20834 1.18667 1.21908 1.25545 0.94062 1.02374 1.38300 1.82376 1.14506 1.00550 1.76500 0.92227 0.92955 0.89814 0.84559 0.81997 0.90506 0.89546 0.89174 0.90252 0.83368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.45 9.92 36.00 0.36 -1.09 16 2 C -0.11 -1.98 6.21 -104.09 -0.65 -2.63 16 3 C -0.20 -2.97 10.77 -39.94 -0.43 -3.40 16 4 C -0.01 -0.07 11.40 -16.73 -0.19 -0.26 16 5 N -0.44 -6.77 3.17 -120.13 -0.38 -7.15 16 6 C 0.06 0.77 10.36 59.85 0.62 1.39 16 7 C 0.07 1.44 6.89 -82.00 -0.56 0.88 16 8 C 0.13 2.87 7.36 -14.74 -0.11 2.76 16 9 N -0.45 -11.55 8.63 -9.36 -0.08 -11.63 16 10 C 0.22 5.97 6.02 -86.46 -0.52 5.45 16 11 C -0.47 -13.46 9.75 -38.00 -0.37 -13.83 16 12 H 0.08 2.42 8.06 -52.49 -0.42 1.99 16 13 C 0.05 1.29 5.45 -17.37 -0.09 1.20 16 14 N -0.82 -22.62 13.67 55.53 0.76 -21.86 16 15 Si 1.08 25.43 24.89 -169.99 -4.23 21.20 16 16 H -0.28 -6.35 6.71 56.52 0.38 -5.97 16 17 H -0.26 -6.23 6.66 56.52 0.38 -5.86 16 18 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 19 C -0.46 -11.72 8.21 30.66 0.25 -11.47 16 20 S 0.01 0.21 19.66 -107.50 -2.11 -1.91 16 21 H 0.06 1.03 8.14 -51.92 -0.42 0.61 16 22 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 23 H 0.08 1.71 6.56 -51.93 -0.34 1.37 16 24 H 0.14 1.64 8.06 -52.49 -0.42 1.22 16 25 H 0.16 1.47 8.06 -52.49 -0.42 1.05 16 26 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.09 1.21 5.19 -40.96 -0.21 1.00 16 29 H 0.29 7.68 8.73 -40.82 -0.36 7.32 16 30 H 0.15 3.71 4.47 -52.49 -0.23 3.48 16 LS Contribution 264.53 15.07 3.99 3.99 Total: -1.00 -30.62 264.53 -6.71 -37.33 By element: Atomic # 1 Polarization: 3.99 SS G_CDS: -2.95 Total: 1.05 kcal Atomic # 6 Polarization: -19.31 SS G_CDS: -1.70 Total: -21.01 kcal Atomic # 7 Polarization: -40.94 SS G_CDS: 0.30 Total: -40.64 kcal Atomic # 14 Polarization: 25.43 SS G_CDS: -4.23 Total: 21.20 kcal Atomic # 16 Polarization: 0.21 SS G_CDS: -2.11 Total: -1.91 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -30.62 -6.71 -37.33 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259650851.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.202 kcal (2) G-P(sol) polarization free energy of solvation -30.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.328 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds