Wall clock time and date at job start Mon Mar 30 2020 05:35:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.33003 * 125.00473 * 2 1 4 4 C 1.39520 * 114.91512 * 180.19480 * 3 2 1 5 5 C 1.47870 * 122.80770 * 179.80661 * 4 3 2 6 6 C 1.35919 * 125.92256 * 180.02562 * 5 4 3 7 7 C 1.41061 * 106.73896 * 180.14742 * 6 5 4 8 8 C 1.50706 * 126.48725 * 179.84092 * 7 6 5 9 9 C 1.50699 * 109.46817 * 269.71314 * 8 7 6 10 10 H 1.08003 * 119.99962 * 359.97438 * 9 8 7 11 11 C 1.37874 * 120.00270 * 180.02562 * 9 8 7 12 12 N 1.31522 * 119.99835 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 120.00390 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47229 * 89.99960 * 13 11 9 15 15 H 1.48500 * 109.46876 * 209.99800 * 13 11 9 16 16 H 1.48493 * 109.46859 * 329.99458 * 13 11 9 17 17 C 1.34634 * 107.02678 * 359.57615 * 7 6 5 18 18 O 1.34434 * 108.66674 * 0.26111 * 17 7 6 19 19 C 1.34774 * 114.38130 * 359.52760 * 4 3 2 20 20 S 1.75795 * 125.00766 * 179.71149 * 2 1 3 21 21 H 1.09003 * 109.46853 * 180.26554 * 1 2 3 22 22 H 1.08998 * 109.47178 * 300.26269 * 1 2 3 23 23 H 1.08995 * 109.47191 * 60.26575 * 1 2 3 24 24 H 1.08007 * 122.54548 * 359.97438 * 3 2 1 25 25 H 1.07991 * 126.63278 * 0.02736 * 6 5 4 26 26 H 1.09000 * 109.47318 * 29.70694 * 8 7 6 27 27 H 1.09000 * 109.47161 * 149.71324 * 8 7 6 28 28 H 0.96992 * 120.00038 * 179.97438 * 12 11 9 29 29 H 1.08000 * 125.66937 * 180.22656 * 17 7 6 30 30 H 1.08001 * 125.23457 * 180.24418 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2700 1.0894 0.0000 4 6 3.6436 0.8450 -0.0043 5 6 4.6502 1.9283 -0.0092 6 6 5.9993 1.7632 -0.0140 7 6 6.5666 3.0547 -0.0140 8 6 8.0363 3.3879 -0.0151 9 6 8.5258 3.5054 1.4053 10 1 7.8410 3.3543 2.2267 11 6 9.8476 3.8068 1.6564 12 7 10.6814 3.9912 0.6561 13 14 10.4545 3.9517 3.4171 14 1 10.9256 2.6248 3.8891 15 1 11.5750 4.9244 3.4759 16 1 9.3454 4.4211 4.2858 17 6 5.5465 3.9334 -0.0188 18 8 4.3893 3.2492 -0.0159 19 6 3.9764 -0.4610 0.0023 20 16 2.5156 -1.4399 0.0073 21 1 -0.3633 -1.0277 0.0048 22 1 -0.3633 0.5179 0.8876 23 1 -0.3633 0.5097 -0.8923 24 1 1.8576 2.0876 -0.0004 25 1 6.5336 0.8248 -0.0154 26 1 8.5876 2.5980 -0.5252 27 1 8.1941 4.3339 -0.5332 28 1 11.6112 4.2036 0.8327 29 1 5.6420 5.0092 -0.0235 30 1 4.9850 -0.8470 0.0042 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259674970.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:03 Heat of formation + Delta-G solvation = 30.319894 kcal Electronic energy + Delta-G solvation = -14638.361146 eV Core-core repulsion = 12105.478499 eV Total energy + Delta-G solvation = -2532.882647 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.81811 -37.95455 -33.98972 -32.71201 -31.95988 -29.15196 -27.16585 -26.63264 -23.51356 -23.08458 -20.41104 -19.85523 -18.52263 -16.93811 -16.37629 -16.24799 -15.31575 -14.93739 -14.47931 -14.05742 -13.75647 -13.05815 -12.83223 -12.37404 -12.35243 -12.28846 -12.17932 -11.84842 -11.61589 -11.03367 -10.90249 -10.69588 -10.37858 -9.83745 -9.56350 -9.25603 -8.64911 -8.41524 -8.39819 -7.29777 -6.03216 -4.06565 0.82309 1.54009 1.85422 1.96203 3.10411 3.31026 3.37131 3.41323 3.62535 3.62980 4.45968 4.62403 5.03363 5.14978 5.29805 5.32559 5.32991 5.50232 5.70312 5.75240 5.87640 6.02546 6.21654 6.31636 6.60001 6.71288 6.78734 7.29127 7.54698 7.62077 7.92896 7.94300 8.35236 8.98741 9.57343 11.06824 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.039545 B = 0.004391 C = 0.004235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.886531 B = 6375.675357 C = 6609.253245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.183 4.183 3 C -0.126 4.126 4 C -0.006 4.006 5 C 0.009 3.991 6 C -0.170 4.170 7 C -0.126 4.126 8 C 0.075 3.925 9 C -0.512 4.512 10 H 0.056 0.944 11 C 0.057 3.943 12 N -0.896 5.896 13 Si 0.895 3.105 14 H -0.280 1.280 15 H -0.286 1.286 16 H -0.273 1.273 17 C -0.061 4.061 18 O -0.182 6.182 19 C -0.207 4.207 20 S 0.104 5.896 21 H 0.066 0.934 22 H 0.076 0.924 23 H 0.076 0.924 24 H 0.143 0.857 25 H 0.142 0.858 26 H 0.029 0.971 27 H 0.028 0.972 28 H 0.262 0.738 29 H 0.200 0.800 30 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.772 -8.165 -2.268 19.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.300 4.300 3 C -0.156 4.156 4 C -0.018 4.018 5 C -0.043 4.043 6 C -0.190 4.190 7 C -0.127 4.127 8 C 0.038 3.962 9 C -0.550 4.550 10 H 0.075 0.925 11 C -0.144 4.144 12 N -0.535 5.535 13 Si 0.722 3.278 14 H -0.206 1.206 15 H -0.212 1.212 16 H -0.198 1.198 17 C -0.128 4.128 18 O -0.079 6.079 19 C -0.342 4.342 20 S 0.368 5.632 21 H 0.085 0.915 22 H 0.095 0.905 23 H 0.094 0.906 24 H 0.161 0.839 25 H 0.160 0.840 26 H 0.047 0.953 27 H 0.047 0.953 28 H 0.071 0.929 29 H 0.217 0.783 30 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -18.181 -9.591 -2.300 20.684 hybrid contribution 1.126 1.618 1.002 2.211 sum -17.055 -7.973 -1.299 18.871 Atomic orbital electron populations 1.20318 0.87726 1.02735 1.03062 1.24277 1.00008 0.95634 1.10070 1.20058 0.91924 0.99794 1.03853 1.16710 0.91339 0.90096 1.03660 1.19717 0.92523 0.81365 1.10704 1.21748 0.91912 0.99287 1.06083 1.21191 0.99387 0.91441 1.00695 1.17779 0.83526 0.97361 0.97534 1.21114 0.94347 1.47774 0.91755 0.92542 1.25012 0.96806 0.95342 0.97211 1.69958 1.04501 1.48368 1.30650 0.86545 0.78448 0.77925 0.84853 1.20608 1.21151 1.19831 1.23887 0.81398 0.97729 1.09766 1.83954 1.34347 1.16776 1.72873 1.25516 1.02307 0.95199 1.11222 1.84048 0.96042 1.09166 1.73904 0.91511 0.90542 0.90552 0.83906 0.84026 0.95289 0.95343 0.92863 0.78346 0.81234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.63 10.36 36.01 0.37 -0.26 16 2 C -0.18 -2.09 6.48 -36.12 -0.23 -2.32 16 3 C -0.13 -1.72 9.83 -40.92 -0.40 -2.12 16 4 C -0.01 -0.10 5.79 -106.70 -0.62 -0.71 16 5 C 0.01 0.16 7.10 -36.47 -0.26 -0.10 16 6 C -0.17 -3.46 10.35 -39.34 -0.41 -3.86 16 7 C -0.13 -2.83 5.34 -104.83 -0.56 -3.39 16 8 C 0.07 1.96 5.49 -29.03 -0.16 1.80 16 9 C -0.51 -14.54 9.09 -34.44 -0.31 -14.86 16 10 H 0.06 1.60 7.74 -52.48 -0.41 1.20 16 11 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 12 N -0.90 -26.61 13.29 55.43 0.74 -25.87 16 13 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 14 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 15 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 16 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 17 C -0.06 -1.22 12.00 29.46 0.35 -0.86 16 18 O -0.18 -3.49 10.62 4.40 0.05 -3.44 16 19 C -0.21 -2.84 10.71 29.50 0.32 -2.52 16 20 S 0.10 1.16 23.30 -107.50 -2.51 -1.35 16 21 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 22 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 23 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.14 1.83 8.06 -52.48 -0.42 1.41 16 25 H 0.14 2.65 7.66 -52.49 -0.40 2.25 16 26 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 27 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 29 H 0.20 3.38 8.06 -52.49 -0.42 2.96 16 30 H 0.17 2.13 7.60 -52.49 -0.40 1.73 16 LS Contribution 284.20 15.07 4.28 4.28 Total: -1.00 -30.95 284.20 -7.77 -38.72 By element: Atomic # 1 Polarization: 1.95 SS G_CDS: -3.30 Total: -1.36 kcal Atomic # 6 Polarization: -25.66 SS G_CDS: -2.01 Total: -27.67 kcal Atomic # 7 Polarization: -26.61 SS G_CDS: 0.74 Total: -25.87 kcal Atomic # 8 Polarization: -3.49 SS G_CDS: 0.05 Total: -3.44 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 16 Polarization: 1.16 SS G_CDS: -2.51 Total: -1.35 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -30.95 -7.77 -38.72 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259674970.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.042 kcal (2) G-P(sol) polarization free energy of solvation -30.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds