Wall clock time and date at job start Mon Mar 30 2020 06:28:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48490 * 109.47339 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47239 * 300.00541 * 3 2 1 6 6 H 1.48504 * 109.46636 * 60.00100 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99806 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99686 * 359.72095 * 7 2 1 10 10 C 1.53001 * 109.46995 * 179.97438 * 9 7 2 11 11 N 1.46498 * 109.47428 * 180.02562 * 10 9 7 12 12 C 1.37303 * 126.29826 * 99.71349 * 11 10 9 13 13 C 1.35884 * 106.80195 * 179.90315 * 12 11 10 14 14 C 1.47815 * 126.10761 * 180.13266 * 13 12 11 15 15 C 1.35944 * 125.93154 * 179.97438 * 14 13 12 16 16 C 1.41018 * 106.74381 * 179.85111 * 15 14 13 17 17 C 1.34667 * 107.02846 * 0.40746 * 16 15 14 18 18 O 1.34407 * 108.67029 * 359.74720 * 17 16 15 19 19 N 1.35763 * 107.78919 * 0.36428 * 13 12 11 20 20 C 1.30873 * 109.12902 * 359.76722 * 19 13 12 21 21 O 1.35480 * 125.56265 * 180.02562 * 20 19 13 22 22 H 0.97000 * 119.99651 * 359.97438 * 1 2 3 23 23 H 1.08998 * 109.47683 * 300.00180 * 9 7 2 24 24 H 1.09001 * 109.47048 * 60.00389 * 9 7 2 25 25 H 1.08998 * 109.47065 * 300.00574 * 10 9 7 26 26 H 1.09006 * 109.46890 * 59.99833 * 10 9 7 27 27 H 1.08007 * 126.59945 * 0.02562 * 12 11 10 28 28 H 1.08006 * 126.62627 * 359.97438 * 15 14 13 29 29 H 1.07997 * 126.48884 * 180.18663 * 16 15 14 30 30 H 1.08003 * 125.66428 * 179.75003 * 17 16 15 31 31 H 0.96705 * 113.99397 * 269.97409 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 0.0052 10 6 2.2452 -3.6621 0.0027 11 7 1.5127 -4.9308 0.0077 12 6 1.2634 -5.7297 -1.0808 13 6 0.5604 -6.8012 -0.6288 14 6 0.0722 -7.9309 -1.4475 15 6 -0.6305 -9.0015 -0.9914 16 6 -0.8885 -9.8236 -2.1078 17 6 -0.3287 -9.2249 -3.1762 18 8 0.2511 -8.0811 -2.7738 19 7 0.3822 -6.6463 0.7081 20 6 0.9498 -5.5307 1.0901 21 8 0.9730 -5.0520 2.3573 22 1 -0.4850 0.8401 0.0004 23 1 0.6281 -2.5552 0.8979 24 1 0.6206 -2.5586 -0.8820 25 1 2.8678 -3.6059 -0.8902 26 1 2.8760 -3.6028 0.8897 27 1 1.5690 -5.5434 -2.0998 28 1 -0.9343 -9.1858 0.0285 29 1 -1.4293 -10.7584 -2.1056 30 1 -0.3433 -9.6013 -4.1885 31 1 0.2259 -4.4776 2.5744 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259716354.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:01 Heat of formation + Delta-G solvation = 8.298376 kcal Electronic energy + Delta-G solvation = -17007.208539 eV Core-core repulsion = 14062.910848 eV Total energy + Delta-G solvation = -2944.297692 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.095 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.48410 -42.88045 -38.26317 -36.55422 -34.71103 -33.83352 -31.78044 -31.26812 -28.70043 -26.86613 -23.83834 -23.54195 -22.76970 -21.81889 -21.08844 -19.34056 -18.70786 -18.36748 -17.34058 -16.93982 -16.67658 -16.29917 -15.92791 -15.37427 -14.98211 -14.88366 -14.32165 -13.73994 -13.70246 -13.49618 -13.33175 -12.95927 -12.86721 -12.64769 -12.19856 -12.03854 -11.47522 -11.16668 -10.96712 -10.69183 -10.64381 -10.13923 -8.71784 -8.27924 -6.40635 0.31739 0.89882 1.41017 1.42290 1.52147 1.55356 1.63532 1.79265 2.24305 2.38240 2.97615 3.08016 3.71863 3.80137 4.03326 4.17806 4.23707 4.37304 4.40040 4.61810 4.86768 4.93787 5.08554 5.14829 5.30275 5.32278 5.52130 5.57949 5.66062 5.73776 6.05287 6.18512 6.61198 6.74678 6.75304 7.30566 8.84058 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.037527 B = 0.004482 C = 0.004218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.940596 B = 6245.120503 C = 6637.000512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.006 3.994 3 Si 0.968 3.032 4 H -0.258 1.258 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.542 4.542 8 H 0.073 0.927 9 C 0.022 3.978 10 C 0.116 3.884 11 N -0.450 5.450 12 C -0.005 4.005 13 C 0.044 3.956 14 C 0.047 3.953 15 C -0.194 4.194 16 C -0.221 4.221 17 C -0.030 4.030 18 O -0.184 6.184 19 N -0.493 5.493 20 C 0.377 3.623 21 O -0.445 6.445 22 H 0.265 0.735 23 H 0.000 1.000 24 H -0.004 1.004 25 H 0.106 0.894 26 H 0.094 0.906 27 H 0.208 0.792 28 H 0.145 0.855 29 H 0.178 0.822 30 H 0.250 0.750 31 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.092 -14.332 -4.876 15.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.193 4.193 3 Si 0.792 3.208 4 H -0.181 1.181 5 H -0.207 1.207 6 H -0.206 1.206 7 C -0.580 4.580 8 H 0.091 0.909 9 C -0.015 4.015 10 C -0.005 4.005 11 N -0.142 5.142 12 C -0.141 4.141 13 C -0.083 4.083 14 C -0.004 4.004 15 C -0.214 4.214 16 C -0.240 4.240 17 C -0.097 4.097 18 O -0.080 6.080 19 N -0.224 5.224 20 C 0.076 3.924 21 O -0.248 6.248 22 H 0.074 0.926 23 H 0.018 0.982 24 H 0.015 0.985 25 H 0.125 0.875 26 H 0.112 0.888 27 H 0.225 0.775 28 H 0.163 0.837 29 H 0.195 0.805 30 H 0.266 0.734 31 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges 1.300 -14.674 -4.334 15.356 hybrid contribution -0.133 1.804 -0.051 1.809 sum 1.167 -12.871 -4.385 13.647 Atomic orbital electron populations 1.70097 1.07924 1.28019 1.50915 1.25924 0.95645 1.03391 0.94297 0.85353 0.79269 0.78555 0.77612 1.18118 1.20657 1.20639 1.21462 0.93953 0.91052 1.51566 0.90899 1.19230 0.94250 0.92194 0.95853 1.22218 0.94733 0.78570 1.04946 1.46462 1.41411 1.19135 1.07147 1.23135 1.04544 0.92723 0.93694 1.17567 1.06388 0.95194 0.89147 1.18841 1.04324 0.96052 0.81180 1.21962 1.03164 0.95045 1.01264 1.22110 1.06677 1.03529 0.91638 1.25016 0.98129 0.84592 1.01964 1.84021 1.62317 1.39578 1.22058 1.70511 1.23249 1.17285 1.11366 1.20248 0.99299 0.90134 0.82720 1.84761 1.52192 1.68217 1.19661 0.92618 0.98211 0.98539 0.87525 0.88768 0.77532 0.83687 0.80498 0.73408 0.72222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.56 13.29 21.45 0.28 -53.27 16 2 C 0.01 0.34 5.46 84.66 0.46 0.80 16 3 Si 0.97 41.42 29.54 68.60 2.03 43.45 16 4 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 5 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 6 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16 7 C -0.54 -27.91 9.11 25.60 0.23 -27.67 16 8 H 0.07 3.51 7.74 -2.92 -0.02 3.49 16 9 C 0.02 1.07 5.29 29.85 0.16 1.23 16 10 C 0.12 4.30 6.05 86.38 0.52 4.82 16 11 N -0.45 -16.43 2.79 -638.87 -1.78 -18.21 16 12 C -0.01 -0.18 11.53 83.29 0.96 0.78 16 13 C 0.04 1.57 6.97 40.52 0.28 1.85 16 14 C 0.05 1.49 7.16 24.27 0.17 1.67 16 15 C -0.19 -5.55 10.83 22.42 0.24 -5.31 16 16 C -0.22 -4.61 10.89 22.13 0.24 -4.37 16 17 C -0.03 -0.57 12.08 67.00 0.81 0.24 16 18 O -0.18 -4.99 10.67 -7.07 -0.08 -5.06 16 19 N -0.49 -19.14 11.31 -303.03 -3.43 -22.57 16 20 C 0.38 14.25 9.03 179.86 1.62 15.87 16 21 O -0.45 -15.09 13.56 -87.80 -1.19 -16.28 16 22 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 23 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 24 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 25 H 0.11 3.52 8.12 -2.39 -0.02 3.50 16 26 H 0.09 3.36 8.14 -2.38 -0.02 3.34 16 27 H 0.21 5.68 8.06 -2.91 -0.02 5.66 16 28 H 0.15 4.18 8.06 -2.91 -0.02 4.15 16 29 H 0.18 2.50 8.06 -2.91 -0.02 2.48 16 30 H 0.25 2.03 8.06 -2.91 -0.02 2.01 16 31 H 0.42 11.18 9.06 -74.05 -0.67 10.50 16 Total: -1.00 -67.56 286.76 2.03 -65.52 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: 0.49 Total: 16.50 kcal Atomic # 6 Polarization: -15.79 SS G_CDS: 5.71 Total: -10.08 kcal Atomic # 7 Polarization: -89.13 SS G_CDS: -4.92 Total: -94.05 kcal Atomic # 8 Polarization: -20.08 SS G_CDS: -1.27 Total: -21.34 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 2.03 Total: 43.45 kcal Total: -67.56 2.03 -65.52 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259716354.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.823 kcal (2) G-P(sol) polarization free energy of solvation -67.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds