Wall clock time and date at job start Mon Mar 30 2020 06:03:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.28560 * 124.51890 * 2 1 4 4 C 1.33384 * 117.14883 * 180.02562 * 3 2 1 5 5 C 1.47091 * 123.26356 * 179.97438 * 4 3 2 6 6 C 1.38809 * 125.80106 * 6.92445 * 5 4 3 7 7 C 1.38478 * 107.89228 * 179.73449 * 6 5 4 8 8 C 1.40009 * 107.53460 * 0.38963 * 7 6 5 9 9 C 1.39658 * 126.09767 * 179.87306 * 8 7 6 10 10 H 1.08000 * 120.00343 * 156.99734 * 9 8 7 11 11 C 1.39944 * 119.99957 * 336.72537 * 9 8 7 12 12 N 1.30945 * 120.00469 * 164.57610 * 11 9 8 13 13 Si 1.86808 * 119.99736 * 344.57673 * 11 9 8 14 14 H 1.48503 * 109.46974 * 92.19252 * 13 11 9 15 15 H 1.48497 * 109.46928 * 212.19003 * 13 11 9 16 16 H 1.48493 * 109.47184 * 332.19055 * 13 11 9 17 17 N 1.37324 * 125.79790 * 186.89701 * 5 4 3 18 18 C 1.46501 * 125.81951 * 359.97438 * 17 5 4 19 19 C 1.36751 * 113.47019 * 0.24594 * 4 3 2 20 20 S 1.70827 * 124.51792 * 180.02562 * 2 1 3 21 21 H 1.08999 * 109.46720 * 90.00533 * 1 2 3 22 22 H 1.08999 * 109.47197 * 210.00146 * 1 2 3 23 23 H 1.08992 * 109.47378 * 330.00086 * 1 2 3 24 24 H 1.08004 * 126.05314 * 359.97348 * 6 5 4 25 25 H 1.07998 * 126.23492 * 180.26871 * 7 6 5 26 26 H 0.96993 * 120.00275 * 179.97438 * 12 11 9 27 27 H 1.08997 * 109.47394 * 277.47734 * 18 17 5 28 28 H 1.09002 * 109.47119 * 37.48043 * 18 17 5 29 29 H 1.08997 * 109.47453 * 157.47327 * 18 17 5 30 30 H 1.07999 * 126.11862 * 179.75563 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2355 1.0593 0.0000 4 6 3.5584 0.8882 -0.0005 5 6 4.5162 2.0044 -0.0012 6 6 4.1970 3.3485 0.1345 7 6 5.3764 4.0727 0.0885 8 6 6.4246 3.1610 -0.0858 9 6 7.7814 3.4766 -0.1856 10 1 8.5277 2.7325 0.0506 11 6 8.1740 4.7552 -0.5972 12 7 9.4065 5.1546 -0.4073 13 14 6.9397 5.8924 -1.4175 14 1 6.2914 6.7443 -0.3883 15 1 7.6398 6.7538 -2.4039 16 1 5.9067 5.0830 -2.1124 17 7 5.8784 1.8939 -0.1355 18 6 6.6249 0.6444 -0.3020 19 6 3.9376 -0.4257 -0.0064 20 16 2.4750 -1.4075 -0.0006 21 1 -0.3633 -0.0001 -1.0277 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3634 0.8899 0.5138 24 1 3.2047 3.7567 0.2581 25 1 5.4704 5.1454 0.1702 26 1 9.6787 6.0406 -0.6929 27 1 6.7890 0.1864 0.6734 28 1 6.0551 -0.0381 -0.9326 29 1 7.5861 0.8551 -0.7707 30 1 4.9523 -0.7954 -0.0116 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259761087.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:24 Heat of formation + Delta-G solvation = 81.782317 kcal Electronic energy + Delta-G solvation = -15278.623445 eV Core-core repulsion = 12780.265127 eV Total energy + Delta-G solvation = -2498.358318 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.068 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.86522 -38.56136 -33.65428 -32.24569 -31.73222 -29.36119 -27.60633 -25.66918 -25.02411 -22.37393 -20.04118 -19.78990 -18.81152 -17.24561 -16.31226 -15.77046 -14.80582 -14.74577 -14.25831 -14.01184 -13.68921 -13.15451 -12.53640 -12.45048 -12.37064 -12.20023 -12.00816 -11.73854 -11.29820 -11.02846 -10.88504 -10.58872 -10.13280 -9.73941 -9.32518 -9.26140 -9.03432 -8.62763 -7.48771 -6.96809 -6.82140 -4.38385 1.03065 1.75908 2.18463 2.63612 3.13384 3.22713 3.37724 3.72504 3.91909 4.04367 4.35994 4.51192 5.08762 5.21986 5.44428 5.52323 5.55157 5.69705 5.88131 5.90309 5.92700 6.14623 6.54879 6.58969 6.67523 6.93714 7.35079 7.40179 7.67914 8.05180 8.18424 8.32611 8.46310 8.75987 8.94482 10.05313 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.043094 B = 0.006058 C = 0.005432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.581500 B = 4621.092504 C = 5153.152110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.055 3.945 3 N -0.464 5.464 4 C 0.193 3.807 5 C -0.064 4.064 6 C -0.081 4.081 7 C -0.343 4.343 8 C 0.247 3.753 9 C -0.447 4.447 10 H 0.089 0.911 11 C 0.097 3.903 12 N -0.810 5.810 13 Si 0.919 3.081 14 H -0.269 1.269 15 H -0.296 1.296 16 H -0.241 1.241 17 N -0.472 5.472 18 C 0.085 3.915 19 C -0.331 4.331 20 S 0.062 5.938 21 H 0.082 0.918 22 H 0.077 0.923 23 H 0.086 0.914 24 H 0.118 0.882 25 H 0.119 0.881 26 H 0.287 0.713 27 H 0.051 0.949 28 H 0.068 0.932 29 H 0.082 0.918 30 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.520 -9.014 -0.697 13.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.226 4.226 3 N -0.179 5.179 4 C 0.066 3.934 5 C -0.168 4.168 6 C -0.108 4.108 7 C -0.365 4.365 8 C 0.134 3.866 9 C -0.481 4.481 10 H 0.107 0.893 11 C -0.123 4.123 12 N -0.436 5.436 13 Si 0.746 3.254 14 H -0.195 1.195 15 H -0.224 1.224 16 H -0.164 1.164 17 N -0.157 5.157 18 C -0.058 4.058 19 C -0.468 4.468 20 S 0.314 5.686 21 H 0.101 0.899 22 H 0.095 0.905 23 H 0.105 0.895 24 H 0.136 0.864 25 H 0.137 0.863 26 H 0.098 0.902 27 H 0.070 0.930 28 H 0.087 0.913 29 H 0.101 0.899 30 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -10.706 -9.797 -0.732 14.530 hybrid contribution 0.416 1.151 -0.235 1.247 sum -10.289 -8.646 -0.967 13.474 Atomic orbital electron populations 1.20407 0.85743 1.03802 1.03526 1.26745 1.01327 0.90986 1.03518 1.66245 1.04616 1.30832 1.16250 1.18296 0.87534 0.90504 0.97110 1.17182 0.81271 0.91060 1.27307 1.20657 0.97109 0.90987 1.02008 1.20737 0.92520 0.97430 1.25794 1.18230 0.93036 0.81211 0.94140 1.18264 0.89461 0.98626 1.41754 0.89278 1.25849 0.96025 0.97626 0.92799 1.69659 1.18631 1.19913 1.35388 0.86218 0.80451 0.79263 0.79513 1.19478 1.22372 1.16438 1.43805 1.04128 1.05636 1.62135 1.21810 0.97404 0.85708 1.00832 1.27275 1.01455 0.95075 1.22967 1.83436 0.99361 1.13738 1.72044 0.89940 0.90460 0.89509 0.86360 0.86350 0.90214 0.93031 0.91336 0.89937 0.80933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.78 10.45 36.01 0.38 -0.41 16 2 C 0.05 0.85 7.33 -13.65 -0.10 0.75 16 3 N -0.46 -9.03 10.44 -8.25 -0.09 -9.11 16 4 C 0.19 4.01 6.75 -84.14 -0.57 3.44 16 5 C -0.06 -1.49 6.89 -81.60 -0.56 -2.05 16 6 C -0.08 -1.95 10.68 -39.28 -0.42 -2.37 16 7 C -0.34 -8.69 8.06 -38.83 -0.31 -9.00 16 8 C 0.25 6.34 6.14 -83.86 -0.52 5.83 16 9 C -0.45 -11.82 9.24 -38.41 -0.35 -12.18 16 10 H 0.09 2.41 7.67 -52.49 -0.40 2.01 16 11 C 0.10 2.52 5.50 -17.29 -0.10 2.43 16 12 N -0.81 -21.20 13.93 55.55 0.77 -20.42 16 13 Si 0.92 21.06 24.58 -169.99 -4.18 16.88 16 14 H -0.27 -6.04 6.69 56.52 0.38 -5.67 16 15 H -0.30 -6.50 7.11 56.52 0.40 -6.10 16 16 H -0.24 -5.76 6.63 56.52 0.37 -5.39 16 17 N -0.47 -11.02 3.22 -117.04 -0.38 -11.39 16 18 C 0.09 1.58 9.36 59.85 0.56 2.14 16 19 C -0.33 -5.88 10.12 30.19 0.31 -5.58 16 20 S 0.06 0.88 23.14 -107.50 -2.49 -1.61 16 21 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 22 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 24 H 0.12 2.64 8.06 -52.48 -0.42 2.21 16 25 H 0.12 2.93 4.62 -52.49 -0.24 2.69 16 26 H 0.29 6.83 8.30 -40.82 -0.34 6.49 16 27 H 0.05 0.88 8.09 -51.93 -0.42 0.46 16 28 H 0.07 1.13 5.80 -51.93 -0.30 0.83 16 29 H 0.08 1.50 7.35 -51.93 -0.38 1.12 16 30 H 0.17 2.82 5.02 -52.49 -0.26 2.55 16 LS Contribution 265.59 15.07 4.00 4.00 Total: -1.00 -29.53 265.59 -6.92 -36.45 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: -2.89 Total: 2.20 kcal Atomic # 6 Polarization: -15.31 SS G_CDS: -1.68 Total: -17.00 kcal Atomic # 7 Polarization: -41.24 SS G_CDS: 0.31 Total: -40.93 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -4.18 Total: 16.88 kcal Atomic # 16 Polarization: 0.88 SS G_CDS: -2.49 Total: -1.61 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -29.53 -6.92 -36.45 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259761087.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.236 kcal (2) G-P(sol) polarization free energy of solvation -29.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds