Wall clock time and date at job start Mon Mar 30 2020 06:03:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.28560 * 124.51890 * 2 1 4 4 C 1.33384 * 117.14883 * 180.02562 * 3 2 1 5 5 C 1.47091 * 123.26356 * 179.97438 * 4 3 2 6 6 C 1.38809 * 125.80106 * 6.92445 * 5 4 3 7 7 C 1.38478 * 107.89228 * 179.73449 * 6 5 4 8 8 C 1.40009 * 107.53460 * 0.38963 * 7 6 5 9 9 C 1.39658 * 126.09767 * 179.87306 * 8 7 6 10 10 H 1.08000 * 120.00343 * 156.99734 * 9 8 7 11 11 C 1.39944 * 119.99957 * 336.72537 * 9 8 7 12 12 N 1.30945 * 120.00469 * 164.57610 * 11 9 8 13 13 Si 1.86808 * 119.99736 * 344.57673 * 11 9 8 14 14 H 1.48503 * 109.46974 * 92.19252 * 13 11 9 15 15 H 1.48497 * 109.46928 * 212.19003 * 13 11 9 16 16 H 1.48493 * 109.47184 * 332.19055 * 13 11 9 17 17 N 1.37324 * 125.79790 * 186.89701 * 5 4 3 18 18 C 1.46501 * 125.81951 * 359.97438 * 17 5 4 19 19 C 1.36751 * 113.47019 * 0.24594 * 4 3 2 20 20 S 1.70827 * 124.51792 * 180.02562 * 2 1 3 21 21 H 1.08999 * 109.46720 * 90.00533 * 1 2 3 22 22 H 1.08999 * 109.47197 * 210.00146 * 1 2 3 23 23 H 1.08992 * 109.47378 * 330.00086 * 1 2 3 24 24 H 1.08004 * 126.05314 * 359.97348 * 6 5 4 25 25 H 1.07998 * 126.23492 * 180.26871 * 7 6 5 26 26 H 0.96993 * 120.00275 * 179.97438 * 12 11 9 27 27 H 1.08997 * 109.47394 * 277.47734 * 18 17 5 28 28 H 1.09002 * 109.47119 * 37.48043 * 18 17 5 29 29 H 1.08997 * 109.47453 * 157.47327 * 18 17 5 30 30 H 1.07999 * 126.11862 * 179.75563 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2355 1.0593 0.0000 4 6 3.5584 0.8882 -0.0005 5 6 4.5162 2.0044 -0.0012 6 6 4.1970 3.3485 0.1345 7 6 5.3764 4.0727 0.0885 8 6 6.4246 3.1610 -0.0858 9 6 7.7814 3.4766 -0.1856 10 1 8.5277 2.7325 0.0506 11 6 8.1740 4.7552 -0.5972 12 7 9.4065 5.1546 -0.4073 13 14 6.9397 5.8924 -1.4175 14 1 6.2914 6.7443 -0.3883 15 1 7.6398 6.7538 -2.4039 16 1 5.9067 5.0830 -2.1124 17 7 5.8784 1.8939 -0.1355 18 6 6.6249 0.6444 -0.3020 19 6 3.9376 -0.4257 -0.0064 20 16 2.4750 -1.4075 -0.0006 21 1 -0.3633 -0.0001 -1.0277 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3634 0.8899 0.5138 24 1 3.2047 3.7567 0.2581 25 1 5.4704 5.1454 0.1702 26 1 9.6787 6.0406 -0.6929 27 1 6.7890 0.1864 0.6734 28 1 6.0551 -0.0381 -0.9326 29 1 7.5861 0.8551 -0.7707 30 1 4.9523 -0.7954 -0.0116 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259761087.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:24 Heat of formation + Delta-G solvation = 62.911303 kcal Electronic energy + Delta-G solvation = -15279.441753 eV Core-core repulsion = 12780.265127 eV Total energy + Delta-G solvation = -2499.176626 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.068 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.57029 -40.04925 -35.53143 -33.77237 -33.19867 -31.06337 -28.94704 -27.34466 -26.68691 -23.84320 -21.89334 -21.24405 -20.40621 -19.00744 -17.89631 -17.51996 -16.39723 -16.17310 -15.63881 -15.50980 -15.48126 -14.53470 -14.03473 -13.94422 -13.87170 -13.59921 -13.45219 -13.18755 -13.00140 -12.65670 -12.41297 -12.25515 -12.01056 -11.59773 -11.17324 -10.56532 -10.33182 -10.08523 -9.30036 -8.88694 -8.60501 -6.32273 -0.30344 0.51784 0.81834 1.00244 1.31618 1.41679 1.53374 1.90017 2.20139 2.26547 2.62572 3.12872 3.27999 4.02113 4.12650 4.23885 4.36015 4.45361 4.61727 4.65518 4.71057 4.78918 4.86901 4.98075 5.07717 5.22128 5.47108 5.58920 5.78276 6.18089 6.39533 6.59616 6.75203 6.95568 7.10359 8.19103 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.043094 B = 0.006058 C = 0.005432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.581500 B = 4621.092504 C = 5153.152110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.047 3.953 3 N -0.503 5.503 4 C 0.156 3.844 5 C -0.050 4.050 6 C -0.116 4.116 7 C -0.358 4.358 8 C 0.218 3.782 9 C -0.472 4.472 10 H 0.068 0.932 11 C 0.067 3.933 12 N -0.846 5.846 13 Si 0.968 3.032 14 H -0.265 1.265 15 H -0.279 1.279 16 H -0.260 1.260 17 N -0.472 5.472 18 C 0.078 3.922 19 C -0.325 4.325 20 S 0.157 5.843 21 H 0.101 0.899 22 H 0.108 0.892 23 H 0.087 0.913 24 H 0.127 0.873 25 H 0.115 0.885 26 H 0.296 0.704 27 H 0.071 0.929 28 H 0.093 0.907 29 H 0.080 0.920 30 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.198 -11.804 -0.946 17.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.232 4.232 3 N -0.220 5.220 4 C 0.027 3.973 5 C -0.156 4.156 6 C -0.142 4.142 7 C -0.380 4.380 8 C 0.104 3.896 9 C -0.506 4.506 10 H 0.086 0.914 11 C -0.150 4.150 12 N -0.474 5.474 13 Si 0.793 3.207 14 H -0.191 1.191 15 H -0.206 1.206 16 H -0.184 1.184 17 N -0.156 5.156 18 C -0.063 4.063 19 C -0.463 4.463 20 S 0.412 5.588 21 H 0.119 0.881 22 H 0.127 0.873 23 H 0.105 0.895 24 H 0.145 0.855 25 H 0.133 0.867 26 H 0.106 0.894 27 H 0.089 0.911 28 H 0.111 0.889 29 H 0.099 0.901 30 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -13.369 -12.614 -0.982 18.407 hybrid contribution 0.918 1.544 -0.120 1.801 sum -12.451 -11.070 -1.102 16.696 Atomic orbital electron populations 1.20667 0.82344 1.05413 1.05208 1.27629 1.03447 0.90910 1.01203 1.66246 1.04190 1.33035 1.18545 1.18249 0.88170 0.90694 1.00191 1.17715 0.81745 0.92079 1.24048 1.20779 0.97177 0.91649 1.04644 1.20832 0.93203 0.97510 1.26462 1.18222 0.92801 0.82479 0.96110 1.18204 0.89529 0.98909 1.44005 0.91358 1.26357 0.97156 0.98432 0.93038 1.69670 1.19591 1.20901 1.37243 0.85468 0.78429 0.77870 0.78913 1.19121 1.20624 1.18408 1.44119 1.04562 1.06395 1.60481 1.22093 0.97334 0.84409 1.02454 1.27753 1.04367 0.95327 1.18843 1.83180 0.95567 1.10830 1.69271 0.88056 0.87328 0.89452 0.85520 0.86707 0.89392 0.91085 0.88863 0.90133 0.79659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.26 10.45 71.24 0.74 -0.51 16 2 C 0.05 1.28 7.33 88.59 0.65 1.93 16 3 N -0.50 -18.47 10.44 -180.01 -1.88 -20.35 16 4 C 0.16 6.18 6.75 40.88 0.28 6.45 16 5 C -0.05 -2.31 6.89 40.74 0.28 -2.03 16 6 C -0.12 -5.71 10.68 22.46 0.24 -5.47 16 7 C -0.36 -18.74 8.06 22.76 0.18 -18.56 16 8 C 0.22 11.56 6.14 38.93 0.24 11.80 16 9 C -0.47 -26.16 9.24 23.03 0.21 -25.95 16 10 H 0.07 3.91 7.67 -2.91 -0.02 3.89 16 11 C 0.07 3.58 5.50 85.24 0.47 4.05 16 12 N -0.85 -45.91 13.93 21.84 0.30 -45.60 16 13 Si 0.97 44.89 24.58 68.60 1.69 46.58 16 14 H -0.27 -11.98 6.69 99.48 0.67 -11.32 16 15 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 16 H -0.26 -12.71 6.63 99.48 0.66 -12.05 16 17 N -0.47 -22.18 3.22 -524.20 -1.69 -23.87 16 18 C 0.08 2.83 9.36 127.77 1.20 4.03 16 19 C -0.32 -10.38 10.12 67.47 0.68 -9.69 16 20 S 0.16 3.68 23.14 -56.49 -1.31 2.38 16 21 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 22 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 23 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 24 H 0.13 5.79 8.06 -2.91 -0.02 5.77 16 25 H 0.12 5.90 4.62 -2.91 -0.01 5.89 16 26 H 0.30 14.46 8.30 -92.71 -0.77 13.69 16 27 H 0.07 2.30 8.09 -2.39 -0.02 2.28 16 28 H 0.09 2.86 5.80 -2.39 -0.01 2.84 16 29 H 0.08 2.95 7.35 -2.39 -0.02 2.93 16 30 H 0.19 5.31 5.02 -2.91 -0.01 5.29 16 Total: -1.00 -66.32 265.59 3.37 -62.96 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: 1.08 Total: 11.86 kcal Atomic # 6 Polarization: -39.13 SS G_CDS: 5.17 Total: -33.96 kcal Atomic # 7 Polarization: -86.55 SS G_CDS: -3.26 Total: -89.82 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 1.69 Total: 46.58 kcal Atomic # 16 Polarization: 3.68 SS G_CDS: -1.31 Total: 2.38 kcal Total: -66.32 3.37 -62.96 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259761087.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.867 kcal (2) G-P(sol) polarization free energy of solvation -66.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds