Wall clock time and date at job start Mon Mar 30 2020 06:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86801 * 120.00056 * 2 1 4 4 H 1.48503 * 109.47041 * 240.00039 * 3 2 1 5 5 H 1.48499 * 109.47097 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47379 * 119.99961 * 3 2 1 7 7 C 1.37877 * 120.00125 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00276 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00148 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47504 * 179.97438 * 9 7 2 11 11 C 1.50693 * 109.47281 * 180.02562 * 10 9 7 12 12 N 1.31134 * 126.55164 * 89.99954 * 11 10 9 13 13 C 1.34493 * 105.61402 * 180.02562 * 12 11 10 14 14 C 1.50704 * 126.28445 * 179.97438 * 13 12 11 15 15 C 1.50697 * 109.47062 * 90.00078 * 14 13 12 16 16 C 1.34517 * 125.79067 * 90.00245 * 15 14 13 17 17 C 1.41388 * 106.83576 * 179.97438 * 16 15 14 18 18 C 1.34511 * 106.84442 * 359.97438 * 17 16 15 19 19 O 1.34295 * 108.42007 * 0.27361 * 18 17 16 20 20 N 1.29951 * 107.42728 * 0.24001 * 13 12 11 21 21 O 1.21298 * 110.24657 * 359.58485 * 20 13 12 22 22 H 0.97004 * 120.00422 * 0.02562 * 1 2 3 23 23 H 1.09010 * 109.46716 * 60.00132 * 9 7 2 24 24 H 1.08995 * 109.47141 * 300.00407 * 9 7 2 25 25 H 1.08997 * 109.46733 * 60.00318 * 10 9 7 26 26 H 1.08999 * 109.46856 * 300.00425 * 10 9 7 27 27 H 1.09000 * 109.47169 * 329.99714 * 14 13 12 28 28 H 1.09004 * 109.46626 * 209.99721 * 14 13 12 29 29 H 1.07992 * 126.58259 * 359.93887 * 16 15 14 30 30 H 1.08001 * 126.57171 * 180.02562 * 17 16 15 31 31 H 1.08002 * 125.78644 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6621 0.0015 11 6 1.4918 -4.9672 0.0020 12 7 1.1009 -5.6437 -1.0512 13 6 0.4725 -6.7311 -0.5701 14 6 -0.1620 -7.8282 -1.3856 15 6 0.8565 -8.9049 -1.6580 16 6 1.0931 -9.9784 -0.8826 17 6 2.1207 -10.7188 -1.5109 18 6 2.4502 -10.0539 -2.6328 19 8 1.6853 -8.9531 -2.7138 20 7 0.5081 -6.6593 0.7269 21 8 1.0938 -5.6560 1.0758 22 1 -0.4851 0.8400 -0.0004 23 1 0.6240 -2.5575 -0.8881 24 1 0.6247 -2.5563 0.8919 25 1 2.8725 -3.6040 0.8909 26 1 2.8713 -3.6047 -0.8890 27 1 -0.5192 -7.4185 -2.3303 28 1 -1.0006 -8.2526 -0.8334 29 1 0.5943 -10.2266 0.0425 30 1 2.5568 -11.6417 -1.1580 31 1 3.2056 -10.3521 -3.3448 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259770372.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:06 Heat of formation + Delta-G solvation = 48.545294 kcal Electronic energy + Delta-G solvation = -16821.280476 eV Core-core repulsion = 13878.728022 eV Total energy + Delta-G solvation = -2942.552454 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.095 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -46.61352 -43.55357 -37.33528 -36.43132 -34.74271 -33.99477 -32.91976 -31.63913 -28.20673 -27.74872 -24.88517 -23.88104 -22.73377 -22.32817 -21.34556 -19.26435 -18.69530 -18.40355 -18.06385 -17.14532 -16.50203 -15.97455 -15.64764 -15.43596 -14.79619 -14.47781 -14.26197 -13.79956 -13.72048 -13.59876 -13.39469 -13.00379 -12.77787 -12.73254 -12.42493 -12.12651 -11.91917 -11.84773 -11.36181 -10.92975 -10.82943 -10.55132 -9.53510 -8.19616 -6.31797 0.05682 0.63238 1.14589 1.46918 1.49710 1.57232 1.62450 1.82551 2.06258 2.44518 2.69465 2.98601 3.15764 3.65367 3.93438 4.07159 4.13779 4.29563 4.35490 4.47962 4.52327 4.65433 4.85086 4.89212 4.94566 4.95749 5.12939 5.43414 5.53276 5.53954 5.77906 6.13286 6.13671 6.83498 7.07803 7.38374 8.92620 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.049310 B = 0.003901 C = 0.003812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.699748 B = 7176.517194 C = 7344.201428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.001 3.999 3 Si 0.970 3.030 4 H -0.265 1.265 5 H -0.289 1.289 6 H -0.263 1.263 7 C -0.541 4.541 8 H 0.078 0.922 9 C 0.034 3.966 10 C -0.014 4.014 11 C 0.210 3.790 12 N -0.509 5.509 13 C 0.167 3.833 14 C 0.057 3.943 15 C -0.036 4.036 16 C -0.200 4.200 17 C -0.228 4.228 18 C -0.036 4.036 19 O -0.191 6.191 20 N -0.398 5.398 21 O 0.062 5.938 22 H 0.264 0.736 23 H -0.006 1.006 24 H -0.001 1.001 25 H 0.116 0.884 26 H 0.112 0.888 27 H 0.122 0.878 28 H 0.146 0.854 29 H 0.159 0.841 30 H 0.174 0.826 31 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.087 -18.863 -3.022 19.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.198 4.198 3 Si 0.794 3.206 4 H -0.190 1.190 5 H -0.215 1.215 6 H -0.187 1.187 7 C -0.578 4.578 8 H 0.096 0.904 9 C -0.004 4.004 10 C -0.053 4.053 11 C -0.009 4.009 12 N -0.244 5.244 13 C -0.106 4.106 14 C 0.019 3.981 15 C -0.087 4.087 16 C -0.219 4.219 17 C -0.247 4.247 18 C -0.103 4.103 19 O -0.088 6.088 20 N -0.110 5.110 21 O 0.008 5.992 22 H 0.073 0.927 23 H 0.013 0.987 24 H 0.017 0.983 25 H 0.134 0.866 26 H 0.130 0.870 27 H 0.140 0.860 28 H 0.164 0.836 29 H 0.177 0.823 30 H 0.191 0.809 31 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 3.542 -19.217 -3.144 19.792 hybrid contribution 0.071 0.943 0.228 0.973 sum 3.612 -18.274 -2.916 18.854 Atomic orbital electron populations 1.70104 1.08066 1.28028 1.51268 1.25995 0.95678 1.03580 0.94500 0.85424 0.78115 0.77640 0.79421 1.18987 1.21471 1.18726 1.21540 0.94171 0.91004 1.51120 0.90389 1.18947 0.93960 0.91797 0.95715 1.20532 0.96794 0.81724 1.06278 1.29548 0.94415 0.97082 0.79856 1.71953 1.16900 1.05964 1.29542 1.26082 0.99433 0.96543 0.88569 1.18418 0.93288 0.86290 1.00149 1.21987 0.97659 0.99304 0.89721 1.21957 1.01725 0.96131 1.02116 1.22210 1.01192 1.04025 0.97231 1.24909 0.98006 0.85783 1.01608 1.84047 1.41317 1.41370 1.42049 1.74525 1.16347 1.04205 1.15885 1.85255 1.52317 1.25413 1.36262 0.92738 0.98730 0.98253 0.86569 0.86967 0.85976 0.83587 0.82293 0.80879 0.74451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.77 13.29 21.45 0.28 -55.48 16 2 C 0.00 0.03 5.46 84.66 0.46 0.50 16 3 Si 0.97 42.42 29.54 68.60 2.03 44.45 16 4 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 5 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 6 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 7 C -0.54 -28.74 9.11 25.60 0.23 -28.51 16 8 H 0.08 3.79 7.74 -2.91 -0.02 3.77 16 9 C 0.03 1.72 4.95 29.85 0.15 1.86 16 10 C -0.01 -0.55 5.78 29.85 0.17 -0.38 16 11 C 0.21 8.11 7.77 88.38 0.69 8.79 16 12 N -0.51 -19.78 11.55 -303.20 -3.50 -23.28 16 13 C 0.17 5.67 7.45 138.46 1.03 6.70 16 14 C 0.06 1.41 6.38 29.10 0.19 1.59 16 15 C -0.04 -0.92 6.56 24.83 0.16 -0.76 16 16 C -0.20 -4.50 10.81 22.19 0.24 -4.26 16 17 C -0.23 -4.30 10.91 22.19 0.24 -4.06 16 18 C -0.04 -0.68 12.09 66.97 0.81 0.13 16 19 O -0.19 -4.99 10.65 -2.47 -0.03 -5.02 16 20 N -0.40 -14.28 12.16 -60.32 -0.73 -15.02 16 21 O 0.06 2.34 11.31 74.83 0.85 3.19 16 22 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 23 H -0.01 -0.32 8.14 -2.38 -0.02 -0.34 16 24 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 25 H 0.12 3.85 8.14 -2.39 -0.02 3.83 16 26 H 0.11 4.02 8.14 -2.39 -0.02 4.00 16 27 H 0.12 2.77 8.14 -2.39 -0.02 2.75 16 28 H 0.15 2.76 8.14 -2.38 -0.02 2.74 16 29 H 0.16 3.11 8.06 -2.91 -0.02 3.08 16 30 H 0.17 2.25 8.06 -2.91 -0.02 2.23 16 31 H 0.24 2.30 8.06 -2.91 -0.02 2.28 16 Total: -1.00 -68.04 286.15 4.41 -63.64 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: 1.14 Total: 5.90 kcal Atomic # 6 Polarization: -22.75 SS G_CDS: 4.37 Total: -18.38 kcal Atomic # 7 Polarization: -89.83 SS G_CDS: -3.95 Total: -93.78 kcal Atomic # 8 Polarization: -2.65 SS G_CDS: 0.82 Total: -1.83 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.45 kcal Total: -68.04 4.41 -63.64 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259770372.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.180 kcal (2) G-P(sol) polarization free energy of solvation -68.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.635 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds