Wall clock time and date at job start Mon Mar 30 2020 05:56:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99796 * 2 1 4 4 H 1.48501 * 109.47177 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47070 * 300.00041 * 3 2 1 6 6 H 1.48495 * 109.47105 * 60.00029 * 3 2 1 7 7 C 1.37879 * 120.00242 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99872 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99767 * 359.97438 * 7 2 1 10 10 C 1.50704 * 109.46987 * 180.02562 * 9 7 2 11 11 C 1.39867 * 125.89829 * 124.97618 * 10 9 7 12 12 C 1.35315 * 107.92134 * 179.97438 * 11 10 9 13 13 C 1.50701 * 126.13100 * 180.26483 * 12 11 10 14 14 C 1.50697 * 109.46944 * 274.71600 * 13 12 11 15 15 C 1.33392 * 125.20331 * 89.72035 * 14 13 12 16 16 C 1.38431 * 114.91984 * 179.85801 * 15 14 13 17 17 C 1.33388 * 114.91915 * 0.42831 * 16 15 14 18 18 S 1.75883 * 109.59506 * 359.76718 * 17 16 15 19 19 N 1.34954 * 107.74451 * 0.02562 * 12 11 10 20 20 H 0.97001 * 126.03092 * 179.97438 * 19 12 11 21 21 N 1.30834 * 125.89824 * 304.97820 * 10 9 7 22 22 H 0.96996 * 120.00437 * 359.97438 * 1 2 3 23 23 H 1.08993 * 109.47004 * 60.00701 * 9 7 2 24 24 H 1.08998 * 109.47252 * 300.00278 * 9 7 2 25 25 H 1.07997 * 126.04251 * 0.02562 * 11 10 9 26 26 H 1.08997 * 109.46626 * 34.71095 * 13 12 11 27 27 H 1.08991 * 109.47527 * 154.71583 * 13 12 11 28 28 H 1.07999 * 122.54229 * 0.02562 * 15 14 13 29 29 H 1.07998 * 122.53497 * 180.19787 * 16 15 14 30 30 H 1.08002 * 125.19938 * 179.80083 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2304 -3.6446 -0.0005 11 6 2.2697 -4.6900 0.9278 12 6 3.2877 -5.5130 0.5853 13 6 3.6925 -6.7731 1.3059 14 6 4.6225 -6.4266 2.4399 15 6 4.2421 -6.1372 3.6853 16 6 5.2767 -5.8525 4.5599 17 6 6.4966 -5.9020 4.0226 18 16 6.3750 -6.3347 2.3221 19 7 3.8723 -5.0060 -0.5204 20 1 4.6306 -5.3867 -0.9905 21 7 3.1907 -3.8328 -0.8689 22 1 -0.4850 0.8400 0.0004 23 1 0.6242 -2.5567 -0.8903 24 1 0.6247 -2.5571 0.8896 25 1 1.6046 -4.8182 1.7689 26 1 2.8048 -7.2663 1.7018 27 1 4.2004 -7.4419 0.6111 28 1 3.2058 -6.1284 3.9889 29 1 5.1086 -5.6053 5.5976 30 1 7.4180 -5.7068 4.5510 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259770727.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:56:22 Heat of formation + Delta-G solvation = 93.596302 kcal Electronic energy + Delta-G solvation = -14768.616539 eV Core-core repulsion = 12270.770514 eV Total energy + Delta-G solvation = -2497.846025 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.068 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.53507 -37.88952 -33.77425 -32.81952 -31.11192 -28.90382 -27.65040 -26.17238 -23.39901 -23.13860 -20.01301 -19.43908 -18.66056 -17.37348 -16.68371 -16.10840 -15.53396 -14.47329 -14.21542 -13.73363 -13.39777 -12.93878 -12.82037 -12.56042 -12.44009 -12.12734 -11.87972 -11.54972 -11.35258 -10.83256 -10.72277 -10.61823 -9.93528 -9.56936 -9.28557 -8.75258 -8.52815 -8.44972 -8.21259 -7.94037 -5.96263 -3.96534 0.91927 1.55322 1.92132 2.46079 2.75181 3.36404 3.43073 3.48971 3.53043 3.70005 4.53520 4.76041 4.89414 5.00629 5.07358 5.39884 5.45273 5.53944 5.56984 5.74009 6.05026 6.23279 6.33431 6.43517 6.46778 6.73740 7.44219 7.57588 7.65248 7.92226 8.02258 8.38200 8.65348 9.07579 9.65916 11.15038 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.026757 B = 0.005238 C = 0.004880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.220514 B = 5344.495620 C = 5736.800713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.895 3.105 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.502 4.502 8 H 0.058 0.942 9 C 0.086 3.914 10 C 0.119 3.881 11 C -0.258 4.258 12 C 0.065 3.935 13 C 0.020 3.980 14 C -0.165 4.165 15 C -0.130 4.130 16 C -0.130 4.130 17 C -0.216 4.216 18 S 0.086 5.914 19 N -0.492 5.492 20 H 0.425 0.575 21 N -0.289 5.289 22 H 0.260 0.740 23 H 0.038 0.962 24 H 0.039 0.961 25 H 0.139 0.861 26 H 0.107 0.893 27 H 0.081 0.919 28 H 0.143 0.857 29 H 0.140 0.860 30 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.134 -15.972 7.080 20.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.723 3.277 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.541 4.541 8 H 0.077 0.923 9 C 0.048 3.952 10 C -0.048 4.048 11 C -0.288 4.288 12 C -0.063 4.063 13 C -0.021 4.021 14 C -0.283 4.283 15 C -0.160 4.160 16 C -0.161 4.161 17 C -0.351 4.351 18 S 0.349 5.651 19 N -0.199 5.199 20 H 0.267 0.733 21 N -0.111 5.111 22 H 0.070 0.930 23 H 0.056 0.944 24 H 0.057 0.943 25 H 0.156 0.844 26 H 0.125 0.875 27 H 0.100 0.900 28 H 0.161 0.839 29 H 0.158 0.842 30 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 11.606 -15.613 4.893 20.060 hybrid contribution -0.442 0.745 1.748 1.951 sum 11.164 -14.868 6.642 19.744 Atomic orbital electron populations 1.69956 1.05941 1.26592 1.51254 1.24976 0.94870 0.99186 0.95421 0.86478 0.80165 0.83578 0.77493 1.19795 1.20984 1.21034 1.21111 0.93206 0.89846 1.49937 0.92324 1.17857 0.91127 0.87667 0.98598 1.23289 0.94674 0.95998 0.90796 1.21213 1.03806 0.98394 1.05346 1.20583 0.96881 0.97427 0.91431 1.18617 0.97955 0.92818 0.92736 1.24310 0.96181 1.09179 0.98602 1.20163 1.00997 1.02480 0.92347 1.20189 0.91597 1.02908 1.01358 1.25551 1.01991 1.10490 0.97095 1.84172 1.02815 1.68806 1.09321 1.46393 1.28978 1.21502 1.23007 0.73286 1.77485 1.10233 0.99028 1.24340 0.92996 0.94400 0.94290 0.84361 0.87524 0.90037 0.83921 0.84236 0.82069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.03 13.29 55.43 0.74 -26.30 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 22.38 29.54 -169.99 -5.02 17.36 16 4 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 7 C -0.50 -14.77 9.07 -34.44 -0.31 -15.08 16 8 H 0.06 1.76 7.74 -52.49 -0.41 1.36 16 9 C 0.09 2.33 5.55 -29.03 -0.16 2.16 16 10 C 0.12 2.81 6.43 -82.41 -0.53 2.28 16 11 C -0.26 -4.99 10.64 -40.01 -0.43 -5.42 16 12 C 0.07 1.05 6.44 -82.26 -0.53 0.52 16 13 C 0.02 0.23 6.26 -29.04 -0.18 0.04 16 14 C -0.16 -1.99 5.75 -36.00 -0.21 -2.20 16 15 C -0.13 -1.53 10.05 -41.20 -0.41 -1.95 16 16 C -0.13 -1.42 10.18 -41.21 -0.42 -1.84 16 17 C -0.22 -2.30 11.23 29.04 0.33 -1.97 16 18 S 0.09 0.97 23.33 -107.50 -2.51 -1.54 16 19 N -0.49 -8.58 7.36 33.48 0.25 -8.33 16 20 H 0.43 5.85 8.96 -182.61 -1.64 4.21 16 21 N -0.29 -6.61 12.66 33.67 0.43 -6.18 16 22 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 23 H 0.04 1.08 8.14 -51.93 -0.42 0.65 16 24 H 0.04 1.06 8.12 -51.93 -0.42 0.64 16 25 H 0.14 2.41 8.06 -52.49 -0.42 1.98 16 26 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.14 1.50 8.06 -52.49 -0.42 1.08 16 29 H 0.14 1.23 8.06 -52.49 -0.42 0.81 16 30 H 0.16 1.33 8.06 -52.49 -0.42 0.91 16 LS Contribution 284.32 15.07 4.28 4.28 Total: -1.00 -33.21 284.32 -9.35 -42.55 By element: Atomic # 1 Polarization: 4.60 SS G_CDS: -4.56 Total: 0.04 kcal Atomic # 6 Polarization: -18.95 SS G_CDS: -2.95 Total: -21.90 kcal Atomic # 7 Polarization: -42.21 SS G_CDS: 1.41 Total: -40.81 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Atomic # 16 Polarization: 0.97 SS G_CDS: -2.51 Total: -1.54 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -33.21 -9.35 -42.55 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259770727.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.149 kcal (2) G-P(sol) polarization free energy of solvation -33.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds