Wall clock time and date at job start Mon Mar 30 2020 05:56:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99796 * 2 1 4 4 H 1.48501 * 109.47177 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47070 * 300.00041 * 3 2 1 6 6 H 1.48495 * 109.47105 * 60.00029 * 3 2 1 7 7 C 1.37879 * 120.00242 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99872 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99767 * 359.97438 * 7 2 1 10 10 C 1.50704 * 109.46987 * 180.02562 * 9 7 2 11 11 C 1.39867 * 125.89829 * 124.97618 * 10 9 7 12 12 C 1.35315 * 107.92134 * 179.97438 * 11 10 9 13 13 C 1.50701 * 126.13100 * 180.26483 * 12 11 10 14 14 C 1.50697 * 109.46944 * 274.71600 * 13 12 11 15 15 C 1.33392 * 125.20331 * 89.72035 * 14 13 12 16 16 C 1.38431 * 114.91984 * 179.85801 * 15 14 13 17 17 C 1.33388 * 114.91915 * 0.42831 * 16 15 14 18 18 S 1.75883 * 109.59506 * 359.76718 * 17 16 15 19 19 N 1.34954 * 107.74451 * 0.02562 * 12 11 10 20 20 H 0.97001 * 126.03092 * 179.97438 * 19 12 11 21 21 N 1.30834 * 125.89824 * 304.97820 * 10 9 7 22 22 H 0.96996 * 120.00437 * 359.97438 * 1 2 3 23 23 H 1.08993 * 109.47004 * 60.00701 * 9 7 2 24 24 H 1.08998 * 109.47252 * 300.00278 * 9 7 2 25 25 H 1.07997 * 126.04251 * 0.02562 * 11 10 9 26 26 H 1.08997 * 109.46626 * 34.71095 * 13 12 11 27 27 H 1.08991 * 109.47527 * 154.71583 * 13 12 11 28 28 H 1.07999 * 122.54229 * 0.02562 * 15 14 13 29 29 H 1.07998 * 122.53497 * 180.19787 * 16 15 14 30 30 H 1.08002 * 125.19938 * 179.80083 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2304 -3.6446 -0.0005 11 6 2.2697 -4.6900 0.9278 12 6 3.2877 -5.5130 0.5853 13 6 3.6925 -6.7731 1.3059 14 6 4.6225 -6.4266 2.4399 15 6 4.2421 -6.1372 3.6853 16 6 5.2767 -5.8525 4.5599 17 6 6.4966 -5.9020 4.0226 18 16 6.3750 -6.3347 2.3221 19 7 3.8723 -5.0060 -0.5204 20 1 4.6306 -5.3867 -0.9905 21 7 3.1907 -3.8328 -0.8689 22 1 -0.4850 0.8400 0.0004 23 1 0.6242 -2.5567 -0.8903 24 1 0.6247 -2.5571 0.8896 25 1 1.6046 -4.8182 1.7689 26 1 2.8048 -7.2663 1.7018 27 1 4.2004 -7.4419 0.6111 28 1 3.2058 -6.1284 3.9889 29 1 5.1086 -5.6053 5.5976 30 1 7.4180 -5.7068 4.5510 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259770727.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:56:21 Heat of formation + Delta-G solvation = 72.878674 kcal Electronic energy + Delta-G solvation = -14769.514923 eV Core-core repulsion = 12270.770514 eV Total energy + Delta-G solvation = -2498.744409 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.068 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.05920 -38.74721 -35.63593 -34.27843 -32.82898 -30.16842 -29.59890 -27.23629 -25.49047 -24.07780 -21.42560 -20.68696 -20.01390 -18.56593 -18.39220 -17.71078 -16.54828 -16.38852 -15.63653 -14.93077 -14.67270 -14.31002 -14.16972 -13.95574 -13.73866 -13.52796 -13.28771 -13.19717 -12.69649 -12.57941 -12.41977 -11.86738 -11.69485 -11.59614 -11.19148 -10.60640 -10.02833 -9.63961 -9.40333 -9.36493 -8.20184 -6.29506 0.05199 0.71101 1.06198 1.08711 1.38736 1.39574 1.53072 1.85397 2.00871 2.16655 2.43697 3.12617 3.78007 3.88358 4.03331 4.16967 4.27829 4.63073 4.71134 4.76631 4.84426 4.94243 5.15703 5.25485 5.32067 5.40357 5.51063 5.61704 5.74335 5.81525 6.19766 6.60527 6.78660 6.99782 7.37389 8.91400 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.026757 B = 0.005238 C = 0.004880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.220514 B = 5344.495620 C = 5736.800713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.007 3.993 3 Si 0.964 3.036 4 H -0.273 1.273 5 H -0.274 1.274 6 H -0.271 1.271 7 C -0.523 4.523 8 H 0.045 0.955 9 C 0.094 3.906 10 C 0.090 3.910 11 C -0.282 4.282 12 C 0.101 3.899 13 C 0.025 3.975 14 C -0.184 4.184 15 C -0.137 4.137 16 C -0.144 4.144 17 C -0.216 4.216 18 S 0.079 5.921 19 N -0.475 5.475 20 H 0.443 0.557 21 N -0.330 5.330 22 H 0.267 0.733 23 H 0.009 0.991 24 H 0.026 0.974 25 H 0.153 0.847 26 H 0.132 0.868 27 H 0.110 0.890 28 H 0.152 0.848 29 H 0.158 0.842 30 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.657 -16.832 8.043 21.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.191 4.191 3 Si 0.789 3.211 4 H -0.198 1.198 5 H -0.200 1.200 6 H -0.196 1.196 7 C -0.562 4.562 8 H 0.064 0.936 9 C 0.056 3.944 10 C -0.076 4.076 11 C -0.312 4.312 12 C -0.029 4.029 13 C -0.016 4.016 14 C -0.301 4.301 15 C -0.168 4.168 16 C -0.174 4.174 17 C -0.352 4.352 18 S 0.342 5.658 19 N -0.184 5.184 20 H 0.288 0.712 21 N -0.154 5.154 22 H 0.076 0.924 23 H 0.027 0.973 24 H 0.044 0.956 25 H 0.170 0.830 26 H 0.149 0.851 27 H 0.128 0.872 28 H 0.170 0.830 29 H 0.176 0.824 30 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 13.137 -16.484 5.847 21.874 hybrid contribution -0.853 0.916 1.480 1.938 sum 12.284 -15.568 7.327 21.141 Atomic orbital electron populations 1.70056 1.07352 1.27904 1.51458 1.25838 0.95817 1.02813 0.94657 0.85414 0.78551 0.78967 0.78191 1.19795 1.19979 1.19615 1.21308 0.92729 0.91454 1.50686 0.93644 1.17524 0.91501 0.88877 0.96524 1.22869 0.95072 0.96550 0.93070 1.21360 1.05850 0.98217 1.05746 1.21153 0.94390 0.97639 0.89715 1.18813 0.99369 0.90604 0.92820 1.24377 0.96537 1.10384 0.98835 1.20473 1.01861 1.01823 0.92598 1.20473 0.91522 1.03048 1.02365 1.25917 1.02944 1.09545 0.96768 1.84171 1.02587 1.68873 1.10140 1.46327 1.28823 1.19972 1.23301 0.71176 1.77324 1.11040 1.01705 1.25312 0.92447 0.97265 0.95575 0.82975 0.85051 0.87203 0.83004 0.82419 0.79948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.85 13.29 21.45 0.28 -56.56 16 2 C 0.01 0.41 5.46 84.66 0.46 0.87 16 3 Si 0.96 46.24 29.54 68.60 2.03 48.27 16 4 H -0.27 -13.00 7.11 99.48 0.71 -12.29 16 5 H -0.27 -12.68 7.11 99.48 0.71 -11.98 16 6 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 7 C -0.52 -31.74 9.07 25.60 0.23 -31.51 16 8 H 0.05 2.81 7.74 -2.91 -0.02 2.79 16 9 C 0.09 5.35 5.55 29.10 0.16 5.51 16 10 C 0.09 4.35 6.43 43.10 0.28 4.63 16 11 C -0.28 -10.83 10.64 21.99 0.23 -10.59 16 12 C 0.10 3.07 6.44 41.40 0.27 3.34 16 13 C 0.02 0.48 6.26 29.10 0.18 0.66 16 14 C -0.18 -3.94 5.75 24.59 0.14 -3.80 16 15 C -0.14 -2.91 10.05 21.22 0.21 -2.70 16 16 C -0.14 -2.80 10.18 21.22 0.22 -2.59 16 17 C -0.22 -4.08 11.23 66.72 0.75 -3.33 16 18 S 0.08 1.60 23.33 -56.49 -1.32 0.28 16 19 N -0.48 -15.93 7.36 -48.00 -0.35 -16.28 16 20 H 0.44 11.27 8.96 -213.33 -1.91 9.36 16 21 N -0.33 -15.29 12.66 -47.38 -0.60 -15.89 16 22 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 23 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 24 H 0.03 1.49 8.12 -2.39 -0.02 1.47 16 25 H 0.15 5.22 8.06 -2.91 -0.02 5.19 16 26 H 0.13 2.00 8.14 -2.39 -0.02 1.98 16 27 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.15 2.84 8.06 -2.91 -0.02 2.81 16 29 H 0.16 2.38 8.06 -2.91 -0.02 2.36 16 30 H 0.18 2.50 8.06 -2.91 -0.02 2.48 16 Total: -1.00 -73.06 284.32 2.42 -70.64 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -0.76 Total: 9.04 kcal Atomic # 6 Polarization: -42.64 SS G_CDS: 3.14 Total: -39.50 kcal Atomic # 7 Polarization: -88.06 SS G_CDS: -0.67 Total: -88.73 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.03 Total: 48.27 kcal Atomic # 16 Polarization: 1.60 SS G_CDS: -1.32 Total: 0.28 kcal Total: -73.06 2.42 -70.64 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259770727.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.518 kcal (2) G-P(sol) polarization free energy of solvation -73.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds