Wall clock time and date at job start Mon Mar 30 2020 05:47:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35953 * 116.99901 * 2 1 4 4 C 1.37960 * 119.95387 * 359.97438 * 3 2 1 5 5 C 1.38788 * 120.11512 * 180.02562 * 4 3 2 6 6 C 1.36095 * 120.63738 * 359.97438 * 5 4 3 7 7 C 1.50706 * 119.72281 * 179.74316 * 6 5 4 8 8 C 1.50701 * 109.46843 * 265.00168 * 7 6 5 9 9 H 1.07997 * 120.00410 * 359.97438 * 8 7 6 10 10 C 1.37874 * 119.99517 * 179.97438 * 8 7 6 11 11 N 1.31515 * 120.00549 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 119.99853 * 179.97438 * 10 8 7 13 13 H 1.48506 * 109.47272 * 0.02562 * 12 10 8 14 14 H 1.48507 * 109.47104 * 120.00139 * 12 10 8 15 15 H 1.48497 * 109.47394 * 240.00150 * 12 10 8 16 16 C 1.41289 * 120.56024 * 0.02562 * 6 5 4 17 17 C 1.45380 * 129.29486 * 179.97438 * 16 6 5 18 18 C 1.31862 * 114.88836 * 179.97438 * 17 16 6 19 19 S 1.75301 * 111.36995 * 0.02562 * 18 17 16 20 20 C 1.39609 * 118.85852 * 359.97438 * 16 6 5 21 21 H 1.09004 * 109.46834 * 60.00596 * 1 2 3 22 22 H 1.09004 * 109.46879 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47677 * 300.00075 * 1 2 3 24 24 H 1.07991 * 119.94172 * 0.02562 * 4 3 2 25 25 H 1.07998 * 119.68301 * 180.02562 * 5 4 3 26 26 H 1.09001 * 109.46892 * 25.00283 * 7 6 5 27 27 H 1.09003 * 109.47270 * 144.99906 * 7 6 5 28 28 H 0.97000 * 120.00786 * 179.97438 * 11 10 8 29 29 H 1.08000 * 122.56135 * 359.97438 * 17 16 6 30 30 H 1.08001 * 124.31290 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2939 2.3678 -0.0005 5 6 1.9204 3.6062 -0.0011 6 6 3.2784 3.6963 -0.0006 7 6 3.9372 5.0517 -0.0070 8 6 4.2692 5.4421 -1.4242 9 1 4.0277 4.7753 -2.2387 10 6 4.8812 6.6506 -1.6810 11 7 5.1749 7.4629 -0.6892 12 14 5.2933 7.1342 -3.4376 13 1 4.8627 6.0549 -4.3622 14 1 4.5857 8.3932 -3.7834 15 1 6.7586 7.3393 -3.5638 16 6 4.0758 2.5300 0.0000 17 6 5.5242 2.4049 0.0001 18 6 5.9742 1.1655 0.0012 19 16 4.6577 0.0079 0.0015 20 6 3.4467 1.2837 0.0005 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8899 24 1 0.2155 2.3093 -0.0005 25 1 1.3247 4.5070 -0.0011 26 1 3.2581 5.7879 0.4231 27 1 4.8528 5.0136 0.5833 28 1 5.6058 8.3129 -0.8698 29 1 6.1816 3.2618 -0.0007 30 1 7.0205 0.8976 0.0018 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259792808.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:17 Heat of formation + Delta-G solvation = -2.645036 kcal Electronic energy + Delta-G solvation = -15255.948166 eV Core-core repulsion = 12721.636053 eV Total energy + Delta-G solvation = -2534.312114 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.84055 -37.81843 -34.46141 -33.21850 -30.92120 -29.30555 -27.42448 -26.29077 -23.30017 -23.05360 -20.78351 -19.99260 -18.04368 -16.38610 -16.15888 -15.72930 -15.57501 -14.85115 -14.52892 -14.15603 -13.42340 -13.15242 -12.91377 -12.28237 -12.23019 -11.82719 -11.45750 -11.38791 -11.25146 -10.95689 -10.76953 -10.55794 -10.34912 -10.10414 -9.56847 -9.39040 -8.58893 -8.45170 -8.00655 -6.88619 -6.06111 -4.10716 1.20909 1.89434 1.99849 2.46658 2.81782 3.27583 3.35670 3.41085 3.45950 4.26149 4.46713 5.05955 5.13726 5.20331 5.27096 5.32177 5.48177 5.54903 5.74926 5.88304 5.92646 6.29767 6.47924 6.51005 6.65322 6.97393 7.06373 7.22011 7.49987 7.67526 7.76052 7.89071 8.28376 8.94726 9.53363 11.02643 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.025022 B = 0.006983 C = 0.006031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.726015 B = 4008.494534 C = 4641.238100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.322 6.322 3 C 0.125 3.875 4 C -0.187 4.187 5 C -0.101 4.101 6 C -0.022 4.022 7 C 0.050 3.950 8 C -0.509 4.509 9 H 0.057 0.943 10 C 0.059 3.941 11 N -0.894 5.894 12 Si 0.893 3.107 13 H -0.272 1.272 14 H -0.283 1.283 15 H -0.283 1.283 16 C -0.043 4.043 17 C -0.087 4.087 18 C -0.212 4.212 19 S 0.060 5.940 20 C -0.156 4.156 21 H 0.054 0.946 22 H 0.094 0.906 23 H 0.053 0.947 24 H 0.126 0.874 25 H 0.127 0.873 26 H 0.031 0.969 27 H 0.031 0.969 28 H 0.262 0.738 29 H 0.153 0.847 30 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.319 -12.493 2.308 13.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.236 6.236 3 C 0.077 3.923 4 C -0.208 4.208 5 C -0.121 4.121 6 C -0.024 4.024 7 C 0.013 3.987 8 C -0.547 4.547 9 H 0.076 0.924 10 C -0.142 4.142 11 N -0.533 5.533 12 Si 0.720 3.280 13 H -0.197 1.197 14 H -0.209 1.209 15 H -0.209 1.209 16 C -0.051 4.051 17 C -0.116 4.116 18 C -0.345 4.345 19 S 0.321 5.679 20 C -0.271 4.271 21 H 0.072 0.928 22 H 0.113 0.887 23 H 0.072 0.928 24 H 0.144 0.856 25 H 0.145 0.855 26 H 0.049 0.951 27 H 0.049 0.951 28 H 0.071 0.929 29 H 0.171 0.829 30 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -5.114 -14.103 2.344 15.184 hybrid contribution 0.067 2.047 -1.026 2.291 sum -5.047 -12.056 1.318 13.136 Atomic orbital electron populations 1.22969 0.78879 1.03310 1.01300 1.86020 1.20921 1.27142 1.89493 1.17904 0.88986 0.84365 1.01054 1.21005 0.99170 0.92030 1.08610 1.20384 0.94341 0.96526 1.00846 1.20287 0.92678 0.96098 0.93319 1.18348 0.95909 0.86524 0.97876 1.21076 1.39033 1.02736 0.91855 0.92440 1.24987 0.95687 0.96371 0.97155 1.69960 1.42092 1.10349 1.30871 0.86515 0.78102 0.78499 0.84851 1.19661 1.20932 1.20908 1.19078 0.92544 0.91409 1.02089 1.21122 0.93567 0.97620 0.99335 1.24972 1.02375 0.96279 1.10874 1.83776 0.94849 1.08482 1.80750 1.21794 0.94120 0.97333 1.13808 0.92786 0.88721 0.92836 0.85605 0.85490 0.95120 0.95074 0.92872 0.82919 0.82025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 9.81 101.05 0.99 1.32 16 2 O -0.32 -5.07 10.49 -19.59 -0.21 -5.28 16 3 C 0.13 2.25 6.72 -38.93 -0.26 1.99 16 4 C -0.19 -3.17 9.03 -39.48 -0.36 -3.52 16 5 C -0.10 -1.95 9.55 -40.15 -0.38 -2.33 16 6 C -0.02 -0.48 5.10 -104.23 -0.53 -1.01 16 7 C 0.05 1.27 4.87 -29.03 -0.14 1.13 16 8 C -0.51 -13.97 9.09 -34.44 -0.31 -14.28 16 9 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 10 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 11 N -0.89 -25.86 13.29 55.43 0.74 -25.12 16 12 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 13 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 14 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 15 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 16 C -0.04 -0.90 5.97 -105.39 -0.63 -1.53 16 17 C -0.09 -1.66 9.82 -38.64 -0.38 -2.04 16 18 C -0.21 -3.45 11.02 28.83 0.32 -3.13 16 19 S 0.06 0.99 23.22 -107.50 -2.50 -1.50 16 20 C -0.16 -3.01 6.43 -38.32 -0.25 -3.25 16 21 H 0.05 0.54 7.65 -51.93 -0.40 0.14 16 22 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 23 H 0.05 0.52 7.65 -51.93 -0.40 0.12 16 24 H 0.13 1.69 6.26 -52.49 -0.33 1.36 16 25 H 0.13 2.29 8.03 -52.49 -0.42 1.87 16 26 H 0.03 0.80 8.02 -51.93 -0.42 0.39 16 27 H 0.03 0.82 7.51 -51.93 -0.39 0.43 16 28 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 29 H 0.15 2.95 7.68 -52.49 -0.40 2.55 16 30 H 0.16 2.09 8.06 -52.49 -0.42 1.66 16 LS Contribution 275.77 15.07 4.16 4.16 Total: -1.00 -30.31 275.77 -8.00 -38.31 By element: Atomic # 1 Polarization: 1.38 SS G_CDS: -3.14 Total: -1.76 kcal Atomic # 6 Polarization: -23.08 SS G_CDS: -2.03 Total: -25.11 kcal Atomic # 7 Polarization: -25.86 SS G_CDS: 0.74 Total: -25.12 kcal Atomic # 8 Polarization: -5.07 SS G_CDS: -0.21 Total: -5.28 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: 0.99 SS G_CDS: -2.50 Total: -1.50 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -30.31 -8.00 -38.31 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259792808.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.670 kcal (2) G-P(sol) polarization free energy of solvation -30.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds