Wall clock time and date at job start Mon Mar 30 2020 06:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35317 * 126.13119 * 2 1 4 4 C 1.50700 * 126.03474 * 359.97370 * 3 2 1 5 5 H 1.08994 * 109.47551 * 359.97438 * 4 3 2 6 6 C 1.52996 * 109.47211 * 120.00454 * 4 3 2 7 7 C 1.50702 * 109.46869 * 240.00010 * 4 3 2 8 8 H 1.08002 * 120.00299 * 0.02562 * 7 4 3 9 9 C 1.37884 * 119.99942 * 179.72213 * 7 4 3 10 10 N 1.31514 * 119.99985 * 180.27663 * 9 7 4 11 11 Si 1.86800 * 119.99777 * 0.28166 * 9 7 4 12 12 H 1.48498 * 109.47109 * 89.99834 * 11 9 7 13 13 H 1.48507 * 109.46754 * 209.99574 * 11 9 7 14 14 H 1.48498 * 109.47278 * 329.99405 * 11 9 7 15 15 C 1.39863 * 107.92168 * 180.23644 * 3 2 1 16 16 N 1.30841 * 108.20535 * 359.55262 * 15 3 2 17 17 N 1.34949 * 126.12486 * 179.97438 * 2 1 3 18 18 C 1.46499 * 126.03859 * 0.02562 * 17 2 1 19 19 F 1.39904 * 109.47556 * 89.99514 * 18 17 2 20 20 F 1.39906 * 109.47170 * 209.99717 * 18 17 2 21 21 F 1.39908 * 109.46945 * 329.99661 * 18 17 2 22 22 H 1.09003 * 109.47017 * 90.00616 * 1 2 3 23 23 H 1.08999 * 109.47619 * 210.00550 * 1 2 3 24 24 H 1.09002 * 109.47362 * 330.00939 * 1 2 3 25 25 H 1.09003 * 109.47532 * 59.99881 * 6 4 3 26 26 H 1.09001 * 109.47094 * 179.97438 * 6 4 3 27 27 H 1.09003 * 109.46851 * 299.99806 * 6 4 3 28 28 H 0.96996 * 119.99730 * 180.02562 * 10 9 7 29 29 H 1.08003 * 125.89577 * 179.73519 * 15 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0929 0.0000 4 6 1.8433 2.5275 -0.0006 5 1 0.7538 2.5587 -0.0014 6 6 2.3733 3.2343 1.2486 7 6 2.3662 3.2229 -1.2311 8 1 2.9718 2.6802 -1.9418 9 6 2.0663 4.5503 -1.4527 10 7 2.5181 5.1557 -2.5292 11 14 1.0184 5.4888 -0.2236 12 1 1.8952 6.1146 0.7985 13 1 0.2517 6.5453 -0.9318 14 1 0.0752 4.5529 0.4393 15 6 3.6334 0.6559 -0.0055 16 7 3.6334 -0.6525 0.0010 17 7 2.3026 -1.0900 0.0005 18 6 1.8538 -2.4846 0.0006 19 9 1.7113 -2.9288 -1.3184 20 9 2.7982 -3.2783 0.6605 21 9 0.6234 -2.5785 0.6598 22 1 -0.3633 -0.0001 -1.0277 23 1 -0.3634 -0.8899 0.5139 24 1 -0.3634 0.8901 0.5137 25 1 3.4629 3.2031 1.2490 26 1 2.0399 4.2720 1.2479 27 1 1.9951 2.7313 2.1386 28 1 2.3074 6.0896 -2.6849 29 1 4.5083 1.2891 -0.0109 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259795341.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:56 Heat of formation + Delta-G solvation = -80.700673 kcal Electronic energy + Delta-G solvation = -18511.860864 eV Core-core repulsion = 15021.847144 eV Total energy + Delta-G solvation = -3490.013720 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.083 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -51.53487 -49.23471 -49.11393 -42.44550 -36.59529 -34.04136 -33.80784 -31.74912 -27.92036 -26.99168 -26.66969 -23.72004 -22.63327 -20.78828 -20.12318 -19.35718 -19.24929 -18.33679 -16.86048 -16.49297 -16.07161 -15.88440 -15.70693 -15.57345 -15.38914 -15.27128 -15.16784 -14.86100 -14.61901 -14.06575 -13.73769 -13.66929 -13.26563 -12.96415 -12.74953 -12.32027 -12.11068 -11.64231 -11.23679 -11.09067 -10.80464 -10.66849 -9.40512 -8.20828 -6.24858 0.15979 0.45285 1.40672 1.45060 1.55700 1.64558 1.75745 2.40804 2.41020 2.93881 3.15469 3.46223 3.82144 4.07801 4.42843 4.46288 4.62981 4.78865 4.85680 4.90332 4.94846 5.13692 5.27729 5.37279 5.63897 5.73472 5.76126 6.34535 6.43660 6.81710 7.39845 8.95903 Molecular weight = 248.08amu Principal moments of inertia in cm(-1) A = 0.039855 B = 0.006518 C = 0.006341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.378044 B = 4294.683113 C = 4414.685827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.082 3.918 3 C -0.180 4.180 4 C 0.079 3.921 5 H 0.044 0.956 6 C -0.142 4.142 7 C -0.504 4.504 8 H 0.030 0.970 9 C 0.012 3.988 10 N -0.953 5.953 11 Si 0.949 3.051 12 H -0.268 1.268 13 H -0.306 1.306 14 H -0.237 1.237 15 C 0.090 3.910 16 N -0.302 5.302 17 N -0.458 5.458 18 C 0.704 3.296 19 F -0.157 7.157 20 F -0.146 7.146 21 F -0.136 7.136 22 H 0.090 0.910 23 H 0.099 0.901 24 H 0.101 0.899 25 H 0.054 0.946 26 H 0.034 0.966 27 H 0.060 0.940 28 H 0.264 0.736 29 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.387 -12.925 8.897 16.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.037 4.037 3 C -0.190 4.190 4 C 0.059 3.941 5 H 0.062 0.938 6 C -0.199 4.199 7 C -0.543 4.543 8 H 0.049 0.951 9 C -0.184 4.184 10 N -0.593 5.593 11 Si 0.776 3.224 12 H -0.194 1.194 13 H -0.234 1.234 14 H -0.161 1.161 15 C -0.099 4.099 16 N -0.119 5.119 17 N -0.256 5.256 18 C 0.569 3.431 19 F -0.139 7.139 20 F -0.127 7.127 21 F -0.118 7.118 22 H 0.108 0.892 23 H 0.117 0.883 24 H 0.120 0.880 25 H 0.073 0.927 26 H 0.052 0.948 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -4.750 -14.052 8.816 17.256 hybrid contribution -0.418 1.273 -0.198 1.354 sum -5.168 -12.780 8.619 16.257 Atomic orbital electron populations 1.20906 0.84372 1.06063 1.04891 1.21367 0.96240 0.84962 1.01154 1.20281 0.92244 0.96185 1.10263 1.17614 0.96489 0.86607 0.93402 0.93797 1.22070 1.01561 0.98615 0.97628 1.21178 1.31741 0.95360 1.05979 0.95136 1.25848 0.96927 0.98624 0.97017 1.70055 1.47948 1.12139 1.29195 0.85851 0.79594 0.78357 0.78580 1.19446 1.23435 1.16066 1.24293 0.99450 0.90981 0.95163 1.77434 0.94001 1.13713 1.26765 1.49374 1.06906 1.03711 1.65610 1.17210 0.74669 0.76299 0.74957 1.93320 1.95424 1.88957 1.36183 1.93289 1.65181 1.73515 1.80723 1.93242 1.42403 1.95277 1.80852 0.89196 0.88272 0.88027 0.92700 0.94771 0.92141 0.92716 0.78089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.65 9.65 71.23 0.69 -1.96 15 2 C 0.08 2.76 6.83 41.40 0.28 3.04 15 3 C -0.18 -6.96 4.74 -20.15 -0.10 -7.06 15 4 C 0.08 3.33 2.19 -12.29 -0.03 3.31 15 5 H 0.04 1.80 5.84 -2.39 -0.01 1.79 15 6 C -0.14 -5.35 8.57 71.98 0.62 -4.74 15 7 C -0.50 -27.02 8.99 25.60 0.23 -26.79 15 8 H 0.03 1.85 7.97 -2.91 -0.02 1.83 15 9 C 0.01 0.69 5.45 84.66 0.46 1.15 15 10 N -0.95 -57.95 13.96 21.45 0.30 -57.65 15 11 Si 0.95 42.18 24.37 68.60 1.67 43.86 15 12 H -0.27 -11.41 6.87 99.48 0.68 -10.72 15 13 H -0.31 -13.90 7.11 99.48 0.71 -13.19 15 14 H -0.24 -9.35 6.52 99.48 0.65 -8.70 15 15 C 0.09 3.37 11.52 85.23 0.98 4.36 15 16 N -0.30 -11.14 12.41 -57.02 -0.71 -11.85 15 17 N -0.46 -15.27 3.90 -348.94 -1.36 -16.63 15 18 C 0.70 19.06 4.04 127.77 0.52 19.58 15 19 F -0.16 -4.25 17.51 44.97 0.79 -3.47 15 20 F -0.15 -3.91 17.34 44.97 0.78 -3.13 15 21 F -0.14 -3.03 14.47 44.97 0.65 -2.38 15 22 H 0.09 2.20 8.14 -2.39 -0.02 2.18 15 23 H 0.10 2.03 5.59 -2.39 -0.01 2.01 15 24 H 0.10 2.43 7.14 -2.39 -0.02 2.41 15 25 H 0.05 2.03 8.03 -2.39 -0.02 2.01 15 26 H 0.03 1.33 3.29 -2.39 -0.01 1.33 15 27 H 0.06 1.91 8.14 -2.39 -0.02 1.89 15 28 H 0.26 15.12 8.31 -92.71 -0.77 14.35 15 29 H 0.20 6.97 8.06 -2.91 -0.02 6.94 15 Total: -1.00 -63.11 256.97 6.89 -56.22 By element: Atomic # 1 Polarization: 3.02 SS G_CDS: 1.11 Total: 4.13 kcal Atomic # 6 Polarization: -12.76 SS G_CDS: 3.65 Total: -9.11 kcal Atomic # 7 Polarization: -84.36 SS G_CDS: -1.77 Total: -86.13 kcal Atomic # 9 Polarization: -11.19 SS G_CDS: 2.22 Total: -8.97 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 1.67 Total: 43.86 kcal Total: -63.11 6.89 -56.22 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259795341.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.477 kcal (2) G-P(sol) polarization free energy of solvation -63.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds