Wall clock time and date at job start Mon Mar 30 2020 06:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35321 * 126.12853 * 2 1 4 4 C 1.50691 * 126.03586 * 0.03058 * 3 2 1 5 5 H 1.08998 * 109.48132 * 359.70913 * 4 3 2 6 6 C 1.53003 * 109.47204 * 239.70836 * 4 3 2 7 7 C 1.50700 * 109.47196 * 119.71354 * 4 3 2 8 8 H 1.08002 * 119.99948 * 5.36687 * 7 4 3 9 9 C 1.37878 * 120.00445 * 185.37043 * 7 4 3 10 10 N 1.31510 * 120.00494 * 185.16343 * 9 7 4 11 11 Si 1.86808 * 119.99744 * 5.16645 * 9 7 4 12 12 H 1.48504 * 109.46962 * 269.99748 * 11 9 7 13 13 H 1.48497 * 109.47094 * 29.99989 * 11 9 7 14 14 H 1.48497 * 109.47093 * 149.99990 * 11 9 7 15 15 C 1.39873 * 107.91763 * 179.76472 * 3 2 1 16 16 N 1.30832 * 108.20402 * 0.24006 * 15 3 2 17 17 N 1.34944 * 126.12725 * 180.18536 * 2 1 3 18 18 C 1.46503 * 126.03517 * 359.97438 * 17 2 1 19 19 F 1.39910 * 109.46934 * 185.31125 * 18 17 2 20 20 F 1.39892 * 109.47408 * 305.31102 * 18 17 2 21 21 F 1.39899 * 109.47468 * 65.31523 * 18 17 2 22 22 H 1.08996 * 109.47688 * 89.99440 * 1 2 3 23 23 H 1.08999 * 109.47413 * 209.99684 * 1 2 3 24 24 H 1.09003 * 109.47016 * 329.99419 * 1 2 3 25 25 H 1.09005 * 109.47071 * 54.96576 * 6 4 3 26 26 H 1.08996 * 109.47675 * 174.96618 * 6 4 3 27 27 H 1.09000 * 109.47175 * 294.96774 * 6 4 3 28 28 H 0.97000 * 119.99735 * 355.00057 * 10 9 7 29 29 H 1.07993 * 125.89099 * 180.26755 * 15 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0930 0.0000 4 6 1.8433 2.5275 0.0007 5 1 0.7537 2.5588 -0.0041 6 6 2.3791 3.2362 -1.2449 7 6 2.3603 3.2210 1.2346 8 1 3.0334 2.7041 1.9026 9 6 1.9741 4.5154 1.5110 10 7 2.5028 5.1560 2.5306 11 14 0.6997 5.3593 0.4371 12 1 1.3810 6.0644 -0.6783 13 1 -0.2328 4.3441 -0.1151 14 1 -0.0621 6.3404 1.2509 15 6 3.6335 0.6559 0.0055 16 7 3.6333 -0.6525 0.0034 17 7 2.3026 -1.0900 -0.0035 18 6 1.8538 -2.4845 -0.0075 19 9 2.9613 -3.3311 0.1117 20 9 0.9856 -2.6982 1.0684 21 9 1.1861 -2.7562 -1.2065 22 1 -0.3634 0.0001 -1.0276 23 1 -0.3634 -0.8900 0.5138 24 1 -0.3633 0.8900 0.5139 25 1 2.0793 2.6831 -2.1350 26 1 1.9730 4.2466 -1.2911 27 1 3.4670 3.2839 -1.1961 28 1 3.1095 4.6951 3.1311 29 1 4.5083 1.2891 0.0109 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259795344.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:58 Heat of formation + Delta-G solvation = -72.104987 kcal Electronic energy + Delta-G solvation = -18518.167441 eV Core-core repulsion = 15028.526457 eV Total energy + Delta-G solvation = -3489.640983 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.083 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -50.36493 -48.03541 -47.99152 -41.04107 -34.84335 -32.69363 -31.98075 -30.15057 -26.55054 -25.45848 -24.66066 -21.93523 -21.18798 -19.25466 -18.96807 -18.07434 -18.00590 -17.11919 -15.12872 -14.97971 -14.74871 -14.51722 -14.43096 -14.27019 -14.14015 -14.11024 -13.63967 -13.34771 -12.78978 -12.65077 -12.52757 -11.97713 -11.97452 -11.31824 -11.00972 -10.57573 -10.49190 -9.76748 -9.70226 -9.43934 -8.78432 -8.46917 -7.96994 -6.42808 -4.10904 1.41496 1.83328 2.85256 3.22791 3.35666 3.40339 3.56252 3.63076 4.10616 4.45854 4.72613 5.18251 5.25489 5.29753 5.65984 5.85911 5.99363 6.05052 6.24099 6.41155 6.57622 6.67079 6.76817 6.98194 7.13272 7.40305 7.79152 8.04801 8.35998 8.87012 9.59494 10.95163 Molecular weight = 248.08amu Principal moments of inertia in cm(-1) A = 0.038393 B = 0.006627 C = 0.006398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.118217 B = 4224.287913 C = 4375.182813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.066 3.934 3 C -0.143 4.143 4 C 0.073 3.927 5 H 0.037 0.963 6 C -0.141 4.141 7 C -0.584 4.584 8 H 0.057 0.943 9 C 0.028 3.972 10 N -0.914 5.914 11 Si 1.056 2.944 12 H -0.283 1.283 13 H -0.279 1.279 14 H -0.292 1.292 15 C 0.093 3.907 16 N -0.286 5.286 17 N -0.454 5.454 18 C 0.698 3.302 19 F -0.145 7.145 20 F -0.157 7.157 21 F -0.159 7.159 22 H 0.079 0.921 23 H 0.066 0.934 24 H 0.098 0.902 25 H 0.027 0.973 26 H 0.044 0.956 27 H 0.051 0.949 28 H 0.267 0.733 29 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.914 -12.287 -6.961 14.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.052 4.052 3 C -0.153 4.153 4 C 0.052 3.948 5 H 0.055 0.945 6 C -0.199 4.199 7 C -0.622 4.622 8 H 0.075 0.925 9 C -0.176 4.176 10 N -0.548 5.548 11 Si 0.886 3.114 12 H -0.210 1.210 13 H -0.205 1.205 14 H -0.218 1.218 15 C -0.096 4.096 16 N -0.104 5.104 17 N -0.252 5.252 18 C 0.561 3.439 19 F -0.126 7.126 20 F -0.139 7.139 21 F -0.141 7.141 22 H 0.098 0.902 23 H 0.084 0.916 24 H 0.117 0.883 25 H 0.046 0.954 26 H 0.063 0.937 27 H 0.070 0.930 28 H 0.077 0.923 29 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -4.067 -12.095 -7.191 14.647 hybrid contribution 0.432 -1.032 0.377 1.180 sum -3.636 -13.126 -6.814 15.230 Atomic orbital electron populations 1.20549 0.87042 1.04433 1.03301 1.20864 0.94687 0.85463 1.04212 1.20489 0.91360 0.96726 1.06694 1.17828 0.96298 0.85338 0.95302 0.94503 1.22090 1.01348 0.99290 0.97152 1.22012 1.31648 1.00697 1.07876 0.92463 1.25768 0.98707 0.94568 0.98603 1.70807 1.30111 1.38287 1.15635 0.83841 0.76409 0.75931 0.75256 1.21044 1.20479 1.21839 1.24110 0.99169 0.90759 0.95577 1.77485 0.93048 1.13803 1.26018 1.49180 1.07206 1.02535 1.66262 1.17307 0.74564 0.77424 0.74561 1.93274 1.53081 1.70511 1.95726 1.93286 1.70259 1.94328 1.56025 1.93294 1.80965 1.93381 1.46483 0.90242 0.91553 0.88295 0.95415 0.93705 0.93003 0.92266 0.78951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.38 9.74 36.00 0.35 -1.03 15 2 C 0.07 1.20 6.84 -82.27 -0.56 0.63 15 3 C -0.14 -2.90 4.75 -105.05 -0.50 -3.40 15 4 C 0.07 1.60 2.18 -92.93 -0.20 1.40 15 5 H 0.04 0.81 5.30 -51.93 -0.28 0.53 15 6 C -0.14 -2.85 8.64 37.16 0.32 -2.53 15 7 C -0.58 -15.46 8.78 -34.44 -0.30 -15.76 15 8 H 0.06 1.66 7.92 -52.49 -0.42 1.24 15 9 C 0.03 0.76 5.43 -17.82 -0.10 0.66 15 10 N -0.91 -27.32 13.70 55.43 0.76 -26.56 15 11 Si 1.06 24.28 25.29 -169.99 -4.30 19.98 15 12 H -0.28 -6.21 6.81 56.52 0.38 -5.83 15 13 H -0.28 -5.82 6.36 56.52 0.36 -5.46 15 14 H -0.29 -6.81 7.11 56.52 0.40 -6.41 15 15 C 0.09 1.80 11.58 -17.37 -0.20 1.60 15 16 N -0.29 -5.50 12.24 30.62 0.37 -5.13 15 17 N -0.45 -8.13 3.88 -61.65 -0.24 -8.37 15 18 C 0.70 10.47 3.69 59.85 0.22 10.70 15 19 F -0.14 -2.16 17.15 2.25 0.04 -2.12 15 20 F -0.16 -2.22 16.07 2.25 0.04 -2.18 15 21 F -0.16 -2.17 17.51 2.25 0.04 -2.13 15 22 H 0.08 1.00 8.14 -51.93 -0.42 0.58 15 23 H 0.07 0.86 6.70 -51.93 -0.35 0.51 15 24 H 0.10 1.49 7.15 -51.93 -0.37 1.12 15 25 H 0.03 0.48 8.14 -51.93 -0.42 0.06 15 26 H 0.04 0.92 4.40 -51.93 -0.23 0.69 15 27 H 0.05 1.02 8.14 -51.93 -0.42 0.60 15 28 H 0.27 8.00 8.72 -40.82 -0.36 7.64 15 29 H 0.19 3.37 8.06 -52.49 -0.42 2.94 15 LS Contribution 260.40 15.07 3.92 3.92 Total: -1.00 -29.23 260.40 -2.88 -32.11 By element: Atomic # 1 Polarization: 0.75 SS G_CDS: -2.54 Total: -1.79 kcal Atomic # 6 Polarization: -6.76 SS G_CDS: -0.97 Total: -7.74 kcal Atomic # 7 Polarization: -40.94 SS G_CDS: 0.89 Total: -40.05 kcal Atomic # 9 Polarization: -6.55 SS G_CDS: 0.11 Total: -6.44 kcal Atomic # 14 Polarization: 24.28 SS G_CDS: -4.30 Total: 19.98 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -29.23 -2.88 -32.11 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259795344.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.000 kcal (2) G-P(sol) polarization free energy of solvation -29.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds