Wall clock time and date at job start Mon Mar 30 2020 05:56:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00083 * 2 1 4 4 H 1.48495 * 109.46910 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47081 * 300.00069 * 3 2 1 6 6 H 1.48493 * 109.47178 * 60.00303 * 3 2 1 7 7 C 1.37869 * 119.99741 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00223 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00614 * 359.97438 * 7 2 1 10 10 H 1.09008 * 109.46977 * 300.00328 * 9 7 2 11 11 C 1.52997 * 109.47721 * 180.02562 * 9 7 2 12 12 C 1.50701 * 109.47212 * 174.99887 * 11 9 7 13 13 C 1.33392 * 125.19966 * 89.72097 * 12 11 9 14 14 C 1.38427 * 114.91904 * 179.86047 * 13 12 11 15 15 C 1.33393 * 114.92075 * 0.42909 * 14 13 12 16 16 S 1.75876 * 125.20411 * 270.02620 * 12 11 9 17 17 C 1.50705 * 109.47085 * 59.99819 * 9 7 2 18 18 N 1.30496 * 125.65483 * 215.03046 * 17 9 7 19 19 C 1.34123 * 109.25646 * 180.02562 * 18 17 9 20 20 C 1.34661 * 108.02211 * 359.97438 * 19 18 17 21 21 N 1.35045 * 125.64391 * 34.72484 * 17 9 7 22 22 H 0.97001 * 126.40019 * 359.97438 * 21 17 9 23 23 H 0.97006 * 119.99397 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47153 * 54.99889 * 11 9 7 25 25 H 1.09001 * 109.46832 * 295.00079 * 11 9 7 26 26 H 1.08004 * 122.53965 * 0.02562 * 13 12 11 27 27 H 1.08001 * 122.54146 * 180.19761 * 14 13 12 28 28 H 1.07999 * 125.20313 * 179.79381 * 15 14 13 29 29 H 1.08009 * 125.98746 * 180.02562 * 19 18 17 30 30 H 1.08009 * 126.59121 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0044 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6246 -2.5571 0.8897 11 6 2.2452 -3.6621 -0.0005 12 6 1.4958 -4.9637 0.1233 13 6 1.0366 -5.6868 -0.8992 14 6 0.3793 -6.8513 -0.5413 15 6 0.2969 -7.0693 0.7722 16 16 1.0862 -5.7576 1.6383 17 6 0.3841 -2.5787 -1.2307 18 7 -0.7937 -3.1368 -1.2965 19 6 -1.2693 -3.0203 -2.5451 20 6 -0.3516 -2.3647 -3.2809 21 7 0.6950 -2.0792 -2.4462 22 1 1.5089 -1.6081 -2.6839 23 1 -0.4849 0.8402 0.0004 24 1 2.9294 -3.5552 0.8413 25 1 2.8114 -3.6560 -0.9319 26 1 1.1700 -5.3879 -1.9284 27 1 -0.0386 -7.5301 -1.2701 28 1 -0.1810 -7.9210 1.2331 29 1 -2.2217 -3.3872 -2.8983 30 1 -0.4284 -2.1097 -4.3277 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259809916.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:56:27 Heat of formation + Delta-G solvation = 79.313347 kcal Electronic energy + Delta-G solvation = -15771.925345 eV Core-core repulsion = 13273.459965 eV Total energy + Delta-G solvation = -2498.465380 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.068 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.71897 -37.33755 -34.45098 -31.98482 -31.06858 -28.92126 -27.13375 -25.18774 -22.96884 -21.65029 -20.16490 -19.13681 -18.63141 -17.38985 -16.13462 -15.88411 -14.91799 -14.73136 -13.79301 -13.35808 -13.04781 -12.67727 -12.54693 -12.34372 -12.18790 -11.87893 -11.62926 -11.19610 -11.05707 -10.74827 -10.45063 -10.08716 -9.91721 -9.37143 -8.73436 -8.69419 -8.66187 -7.93958 -7.86723 -7.11991 -6.17428 -4.34126 1.63386 2.24590 2.60302 3.15533 3.25900 3.27730 3.32158 3.42502 4.24564 4.44302 4.56018 5.09206 5.47995 5.56754 5.80768 5.98822 6.08867 6.12784 6.20569 6.39053 6.60727 6.66553 6.71028 6.85156 6.93461 7.15754 7.35477 7.57146 7.71284 7.88665 8.12883 8.61350 8.83209 9.34427 9.51090 10.85396 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.025109 B = 0.008596 C = 0.007031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.882921 B = 3256.359190 C = 3981.480805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.070 3.930 3 Si 0.890 3.110 4 H -0.270 1.270 5 H -0.285 1.285 6 H -0.281 1.281 7 C -0.546 4.546 8 H 0.066 0.934 9 C 0.125 3.875 10 H 0.059 0.941 11 C -0.040 4.040 12 C -0.133 4.133 13 C -0.140 4.140 14 C -0.121 4.121 15 C -0.236 4.236 16 S 0.079 5.921 17 C 0.307 3.693 18 N -0.510 5.510 19 C -0.036 4.036 20 C -0.104 4.104 21 N -0.555 5.555 22 H 0.411 0.589 23 H 0.264 0.736 24 H 0.073 0.927 25 H 0.068 0.932 26 H 0.126 0.874 27 H 0.128 0.872 28 H 0.153 0.847 29 H 0.145 0.855 30 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.786 -8.336 -2.681 9.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.136 4.136 3 Si 0.717 3.283 4 H -0.195 1.195 5 H -0.211 1.211 6 H -0.207 1.207 7 C -0.584 4.584 8 H 0.084 0.916 9 C 0.104 3.896 10 H 0.077 0.923 11 C -0.081 4.081 12 C -0.251 4.251 13 C -0.169 4.169 14 C -0.152 4.152 15 C -0.371 4.371 16 S 0.341 5.659 17 C 0.041 3.959 18 N -0.229 5.229 19 C -0.186 4.186 20 C -0.238 4.238 21 N -0.154 5.154 22 H 0.247 0.753 23 H 0.074 0.926 24 H 0.092 0.908 25 H 0.086 0.914 26 H 0.143 0.857 27 H 0.146 0.854 28 H 0.171 0.829 29 H 0.163 0.837 30 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 2.370 -8.308 -0.519 8.655 hybrid contribution 0.500 1.451 -2.535 2.963 sum 2.871 -6.857 -3.054 8.037 Atomic orbital electron populations 1.70038 1.05767 1.26870 1.46531 1.25071 0.94808 0.99307 0.94463 0.86569 0.80205 0.83681 0.77851 1.19484 1.21087 1.20678 1.21085 0.93171 0.89460 1.54729 0.91563 1.17352 0.90746 0.91839 0.89676 0.92260 1.20369 0.97084 0.88725 1.01907 1.24661 1.04954 1.00925 0.94522 1.19841 1.02094 0.95479 0.99506 1.20024 1.01523 0.98350 0.95303 1.25341 1.10499 1.03815 0.97428 1.84045 1.54820 1.16412 1.10614 1.23768 0.92598 0.92212 0.87313 1.70267 1.08894 1.24482 1.19279 1.21979 0.99798 1.05414 0.91369 1.22236 0.92665 1.11699 0.97180 1.43041 1.17480 1.44605 1.10296 0.75277 0.92640 0.90814 0.91385 0.85652 0.85429 0.82901 0.83721 0.83076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.85 12.37 55.43 0.69 -23.16 16 2 C 0.07 1.80 5.30 -17.82 -0.09 1.70 16 3 Si 0.89 19.86 29.54 -169.99 -5.02 14.84 16 4 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 5 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 6 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.55 -13.52 8.09 -34.44 -0.28 -13.80 16 8 H 0.07 1.58 7.74 -52.48 -0.41 1.17 16 9 C 0.12 2.96 2.24 -92.92 -0.21 2.75 16 10 H 0.06 1.62 8.14 -51.92 -0.42 1.19 16 11 C -0.04 -0.80 5.11 -27.88 -0.14 -0.94 16 12 C -0.13 -2.52 5.41 -36.00 -0.19 -2.71 16 13 C -0.14 -2.55 9.13 -41.21 -0.38 -2.93 16 14 C -0.12 -1.96 10.18 -41.21 -0.42 -2.38 16 15 C -0.24 -3.66 11.23 29.04 0.33 -3.33 16 16 S 0.08 1.34 23.33 -107.50 -2.51 -1.17 16 17 C 0.31 7.22 4.66 -155.41 -0.72 6.50 16 18 N -0.51 -12.43 10.90 -10.82 -0.12 -12.55 16 19 C -0.04 -0.78 11.87 -17.82 -0.21 -0.99 16 20 C -0.10 -2.03 12.04 -16.56 -0.20 -2.23 16 21 N -0.55 -11.76 5.91 -10.23 -0.06 -11.82 16 22 H 0.41 8.06 8.68 -40.82 -0.35 7.70 16 23 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 24 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 25 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 26 H 0.13 2.31 8.06 -52.48 -0.42 1.89 16 27 H 0.13 1.76 8.06 -52.49 -0.42 1.34 16 28 H 0.15 1.93 8.06 -52.49 -0.42 1.50 16 29 H 0.15 2.69 8.06 -52.48 -0.42 2.26 16 30 H 0.15 2.38 8.06 -52.48 -0.42 1.95 16 LS Contribution 278.06 15.07 4.19 4.19 Total: -1.00 -29.24 278.06 -8.63 -37.88 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: -3.28 Total: 10.16 kcal Atomic # 6 Polarization: -15.84 SS G_CDS: -2.52 Total: -18.37 kcal Atomic # 7 Polarization: -48.04 SS G_CDS: 0.51 Total: -47.53 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -5.02 Total: 14.84 kcal Atomic # 16 Polarization: 1.34 SS G_CDS: -2.51 Total: -1.17 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -29.24 -8.63 -37.88 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259809916.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.190 kcal (2) G-P(sol) polarization free energy of solvation -29.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.877 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds