Wall clock time and date at job start Mon Mar 30 2020 05:56:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00083 * 2 1 4 4 H 1.48495 * 109.46910 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47081 * 300.00069 * 3 2 1 6 6 H 1.48493 * 109.47178 * 60.00303 * 3 2 1 7 7 C 1.37869 * 119.99741 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00223 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00614 * 359.97438 * 7 2 1 10 10 H 1.09008 * 109.46977 * 300.00328 * 9 7 2 11 11 C 1.52997 * 109.47721 * 180.02562 * 9 7 2 12 12 C 1.50701 * 109.47212 * 174.99887 * 11 9 7 13 13 C 1.33392 * 125.19966 * 89.72097 * 12 11 9 14 14 C 1.38427 * 114.91904 * 179.86047 * 13 12 11 15 15 C 1.33393 * 114.92075 * 0.42909 * 14 13 12 16 16 S 1.75876 * 125.20411 * 270.02620 * 12 11 9 17 17 C 1.50705 * 109.47085 * 59.99819 * 9 7 2 18 18 N 1.30496 * 125.65483 * 215.03046 * 17 9 7 19 19 C 1.34123 * 109.25646 * 180.02562 * 18 17 9 20 20 C 1.34661 * 108.02211 * 359.97438 * 19 18 17 21 21 N 1.35045 * 125.64391 * 34.72484 * 17 9 7 22 22 H 0.97001 * 126.40019 * 359.97438 * 21 17 9 23 23 H 0.97006 * 119.99397 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47153 * 54.99889 * 11 9 7 25 25 H 1.09001 * 109.46832 * 295.00079 * 11 9 7 26 26 H 1.08004 * 122.53965 * 0.02562 * 13 12 11 27 27 H 1.08001 * 122.54146 * 180.19761 * 14 13 12 28 28 H 1.07999 * 125.20313 * 179.79381 * 15 14 13 29 29 H 1.08009 * 125.98746 * 180.02562 * 19 18 17 30 30 H 1.08009 * 126.59121 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0044 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6246 -2.5571 0.8897 11 6 2.2452 -3.6621 -0.0005 12 6 1.4958 -4.9637 0.1233 13 6 1.0366 -5.6868 -0.8992 14 6 0.3793 -6.8513 -0.5413 15 6 0.2969 -7.0693 0.7722 16 16 1.0862 -5.7576 1.6383 17 6 0.3841 -2.5787 -1.2307 18 7 -0.7937 -3.1368 -1.2965 19 6 -1.2693 -3.0203 -2.5451 20 6 -0.3516 -2.3647 -3.2809 21 7 0.6950 -2.0792 -2.4462 22 1 1.5089 -1.6081 -2.6839 23 1 -0.4849 0.8402 0.0004 24 1 2.9294 -3.5552 0.8413 25 1 2.8114 -3.6560 -0.9319 26 1 1.1700 -5.3879 -1.9284 27 1 -0.0386 -7.5301 -1.2701 28 1 -0.1810 -7.9210 1.2331 29 1 -2.2217 -3.3872 -2.8983 30 1 -0.4284 -2.1097 -4.3277 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259809916.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:56:26 Heat of formation + Delta-G solvation = 62.501430 kcal Electronic energy + Delta-G solvation = -15772.654364 eV Core-core repulsion = 13273.459965 eV Total energy + Delta-G solvation = -2499.194400 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.068 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.39988 -38.70887 -36.19647 -33.77463 -32.78928 -30.49202 -28.77829 -26.86833 -24.56649 -23.20127 -21.81142 -20.87294 -19.98192 -19.13084 -17.68782 -17.56662 -16.60767 -16.23909 -15.47775 -15.01537 -14.66866 -14.29104 -14.11391 -13.85423 -13.71981 -13.39237 -13.15705 -12.84151 -12.78729 -12.43940 -11.96856 -11.71977 -11.51808 -11.23195 -10.67384 -10.44143 -10.41416 -9.32073 -9.21647 -8.78391 -8.12838 -6.36197 0.29462 0.91227 1.27904 1.38469 1.43808 1.53558 1.70886 2.05988 2.38417 2.74961 2.90981 3.13479 4.11585 4.18585 4.34385 4.53287 4.64808 4.71062 4.79510 4.82094 4.95611 5.06417 5.16368 5.39737 5.52967 5.58436 5.71216 5.77351 5.84241 6.09149 6.38573 6.74783 7.08862 7.36335 7.81438 8.88211 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.025109 B = 0.008596 C = 0.007031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.882921 B = 3256.359190 C = 3981.480805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.026 3.974 3 Si 0.953 3.047 4 H -0.257 1.257 5 H -0.284 1.284 6 H -0.288 1.288 7 C -0.546 4.546 8 H 0.075 0.925 9 C 0.127 3.873 10 H 0.012 0.988 11 C -0.031 4.031 12 C -0.163 4.163 13 C -0.138 4.138 14 C -0.134 4.134 15 C -0.220 4.220 16 S 0.069 5.931 17 C 0.292 3.708 18 N -0.543 5.543 19 C -0.065 4.065 20 C -0.085 4.085 21 N -0.555 5.555 22 H 0.417 0.583 23 H 0.258 0.742 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.119 0.881 27 H 0.155 0.845 28 H 0.187 0.813 29 H 0.167 0.833 30 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.268 -8.952 -3.789 10.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.176 4.176 3 Si 0.779 3.221 4 H -0.181 1.181 5 H -0.210 1.210 6 H -0.214 1.214 7 C -0.584 4.584 8 H 0.093 0.907 9 C 0.106 3.894 10 H 0.030 0.970 11 C -0.071 4.071 12 C -0.280 4.280 13 C -0.168 4.168 14 C -0.165 4.165 15 C -0.355 4.355 16 S 0.332 5.668 17 C 0.026 3.974 18 N -0.263 5.263 19 C -0.212 4.212 20 C -0.219 4.219 21 N -0.155 5.155 22 H 0.254 0.746 23 H 0.067 0.933 24 H 0.095 0.905 25 H 0.094 0.906 26 H 0.137 0.863 27 H 0.172 0.828 28 H 0.205 0.795 29 H 0.185 0.815 30 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 2.877 -8.933 -1.632 9.526 hybrid contribution 0.306 1.570 -2.196 2.717 sum 3.183 -7.364 -3.829 8.889 Atomic orbital electron populations 1.70201 1.07426 1.27117 1.48520 1.25766 0.95275 1.02408 0.94190 0.85579 0.79624 0.79685 0.77240 1.18068 1.21045 1.21427 1.21411 0.93609 0.90058 1.53307 0.90735 1.17165 0.90803 0.93115 0.88295 0.96970 1.20179 0.96317 0.88199 1.02418 1.24591 1.06504 1.01177 0.95712 1.19969 1.01706 0.96072 0.99005 1.20273 1.01713 0.98218 0.96282 1.25761 1.08991 1.03677 0.97044 1.84037 1.55296 1.17212 1.10284 1.23481 0.92698 0.93357 0.87894 1.70188 1.09506 1.25452 1.21122 1.22463 1.01330 1.06649 0.90802 1.22875 0.91050 1.09392 0.98596 1.43077 1.18146 1.44321 1.09977 0.74566 0.93260 0.90516 0.90601 0.86336 0.82782 0.79542 0.81542 0.78800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.69 12.37 21.44 0.27 -50.42 16 2 C 0.03 1.34 5.30 84.65 0.45 1.79 16 3 Si 0.95 40.69 29.54 68.60 2.03 42.72 16 4 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 5 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 6 H -0.29 -12.55 7.11 99.48 0.71 -11.85 16 7 C -0.55 -27.13 8.09 25.60 0.21 -26.92 16 8 H 0.07 3.50 7.74 -2.91 -0.02 3.48 16 9 C 0.13 6.17 2.24 -12.29 -0.03 6.14 16 10 H 0.01 0.70 8.14 -2.38 -0.02 0.68 16 11 C -0.03 -1.24 5.11 29.85 0.15 -1.09 16 12 C -0.16 -6.16 5.41 24.59 0.13 -6.03 16 13 C -0.14 -4.92 9.13 21.22 0.19 -4.73 16 14 C -0.13 -4.10 10.18 21.22 0.22 -3.88 16 15 C -0.22 -6.33 11.23 66.72 0.75 -5.58 16 16 S 0.07 2.33 23.33 -56.49 -1.32 1.02 16 17 C 0.29 13.80 4.66 138.13 0.64 14.44 16 18 N -0.54 -26.57 10.90 -188.13 -2.05 -28.62 16 19 C -0.06 -2.69 11.87 83.52 0.99 -1.70 16 20 C -0.09 -3.16 12.04 83.08 1.00 -2.16 16 21 N -0.55 -23.01 5.91 -186.26 -1.10 -24.11 16 22 H 0.42 15.89 8.68 -92.71 -0.80 15.08 16 23 H 0.26 14.21 8.31 -92.70 -0.77 13.44 16 24 H 0.08 2.92 8.14 -2.39 -0.02 2.90 16 25 H 0.08 2.84 8.14 -2.39 -0.02 2.82 16 26 H 0.12 4.32 8.06 -2.91 -0.02 4.30 16 27 H 0.15 3.82 8.06 -2.91 -0.02 3.79 16 28 H 0.19 4.03 8.06 -2.91 -0.02 4.00 16 29 H 0.17 5.93 8.06 -2.91 -0.02 5.90 16 30 H 0.20 5.35 8.06 -2.91 -0.02 5.33 16 Total: -1.00 -63.09 278.06 2.88 -60.21 By element: Atomic # 1 Polarization: 28.57 SS G_CDS: 0.35 Total: 28.92 kcal Atomic # 6 Polarization: -34.43 SS G_CDS: 4.71 Total: -29.72 kcal Atomic # 7 Polarization: -100.26 SS G_CDS: -2.88 Total: -103.15 kcal Atomic # 14 Polarization: 40.69 SS G_CDS: 2.03 Total: 42.72 kcal Atomic # 16 Polarization: 2.33 SS G_CDS: -1.32 Total: 1.02 kcal Total: -63.09 2.88 -60.21 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259809916.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.711 kcal (2) G-P(sol) polarization free energy of solvation -63.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds