Wall clock time and date at job start Mon Mar 30 2020 06:15:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30837 * 125.89861 * 2 1 4 4 N 1.40088 * 108.20852 * 180.02562 * 3 2 1 5 5 C 1.46499 * 126.03866 * 180.02562 * 4 3 2 6 6 F 1.39891 * 109.47231 * 4.96989 * 5 4 3 7 7 F 1.39902 * 109.46889 * 124.97434 * 5 4 3 8 8 F 1.39906 * 109.46650 * 244.97157 * 5 4 3 9 9 C 1.34952 * 107.91997 * 359.75513 * 4 3 2 10 10 C 1.35309 * 107.74907 * 0.39508 * 9 4 3 11 11 C 1.50696 * 126.04430 * 179.87517 * 10 9 4 12 12 C 1.52998 * 109.46969 * 264.68778 * 11 10 9 13 13 C 1.50706 * 109.47348 * 179.97438 * 12 11 10 14 14 H 1.08000 * 119.99302 * 359.97438 * 13 12 11 15 15 C 1.37871 * 120.00436 * 179.72505 * 13 12 11 16 16 N 1.31515 * 119.99684 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00405 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47154 * 89.99418 * 17 15 13 19 19 H 1.48493 * 109.47010 * 209.99942 * 17 15 13 20 20 H 1.48502 * 109.46736 * 329.99638 * 17 15 13 21 21 H 1.09004 * 109.46845 * 269.97408 * 1 2 3 22 22 H 1.09008 * 109.47353 * 29.97017 * 1 2 3 23 23 H 1.08993 * 109.47317 * 149.97716 * 1 2 3 24 24 H 1.08000 * 126.12483 * 180.23639 * 9 4 3 25 25 H 1.09000 * 109.47664 * 144.68706 * 11 10 9 26 26 H 1.09002 * 109.46824 * 24.68177 * 11 10 9 27 27 H 1.09001 * 109.47671 * 59.99812 * 12 11 10 28 28 H 1.08998 * 109.47454 * 299.99809 * 12 11 10 29 29 H 0.97004 * 120.00247 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2741 1.0598 0.0000 4 7 3.6087 0.6342 -0.0006 5 6 4.7899 1.5009 -0.0003 6 9 4.3885 2.8360 0.1150 7 9 5.6133 1.1664 1.0801 8 9 5.4956 1.3276 -1.1958 9 6 3.6142 -0.7153 0.0045 10 6 2.3272 -1.1330 -0.0006 11 6 1.8599 -2.5657 -0.0003 12 6 1.5813 -3.0116 -1.4371 13 6 1.1146 -4.4445 -1.4370 14 1 1.0260 -4.9834 -0.5052 15 6 0.7959 -5.0659 -2.6257 16 7 0.8986 -4.4080 -3.7598 17 14 0.2167 -6.8419 -2.6254 18 1 -1.2621 -6.8802 -2.4958 19 1 0.6192 -7.4940 -3.8973 20 1 0.8326 -7.5632 -1.4828 21 1 -0.3633 -0.0005 1.0277 22 1 -0.3634 0.8903 -0.5134 23 1 -0.3633 -0.8897 -0.5141 24 1 4.4891 -1.3485 0.0091 25 1 0.9473 -2.6502 0.5897 26 1 2.6330 -3.1999 0.4335 27 1 2.4939 -2.9272 -2.0272 28 1 0.8082 -2.3774 -1.8710 29 1 0.6740 -4.8450 -4.5962 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259812454.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:52 Heat of formation + Delta-G solvation = -97.299147 kcal Electronic energy + Delta-G solvation = -17809.696314 eV Core-core repulsion = 14318.962830 eV Total energy + Delta-G solvation = -3490.733484 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.083 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -51.52590 -49.18212 -49.16496 -42.48097 -36.18017 -34.70078 -33.46232 -30.61180 -29.85139 -27.23115 -25.54865 -23.30078 -21.92980 -21.18583 -20.13477 -20.04179 -19.21570 -18.38721 -16.52429 -16.21578 -16.08695 -15.87542 -15.77700 -15.56380 -15.41965 -15.28182 -15.27499 -14.75503 -14.41651 -13.95911 -13.76790 -13.64670 -13.14329 -13.07697 -12.79525 -12.49593 -12.07354 -11.64081 -11.50043 -11.12335 -10.68242 -10.48787 -9.62404 -8.13557 -6.24329 0.09169 0.39602 1.45534 1.46020 1.56161 1.59437 1.63807 2.38397 2.46611 2.91035 3.20334 3.46566 3.69334 4.04686 4.31242 4.51711 4.78670 4.87093 4.92605 4.97396 5.04530 5.20429 5.37537 5.55439 5.63006 5.82632 5.93273 6.29919 6.32255 6.94039 7.45214 8.97824 Molecular weight = 248.08amu Principal moments of inertia in cm(-1) A = 0.036419 B = 0.004991 C = 0.004738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.640489 B = 5608.944505 C = 5908.672765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.103 3.897 3 N -0.299 5.299 4 N -0.461 5.461 5 C 0.705 3.295 6 F -0.142 7.142 7 F -0.144 7.144 8 F -0.152 7.152 9 C 0.067 3.933 10 C -0.205 4.205 11 C -0.026 4.026 12 C 0.036 3.964 13 C -0.537 4.537 14 H 0.066 0.934 15 C 0.000 4.000 16 N -0.935 5.935 17 Si 0.961 3.039 18 H -0.273 1.273 19 H -0.288 1.288 20 H -0.261 1.261 21 H 0.105 0.895 22 H 0.084 0.916 23 H 0.080 0.920 24 H 0.208 0.792 25 H 0.074 0.926 26 H 0.070 0.930 27 H -0.015 1.015 28 H -0.007 1.007 29 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.740 10.020 9.527 14.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.067 4.067 3 N -0.118 5.118 4 N -0.257 5.257 5 C 0.570 3.430 6 F -0.123 7.123 7 F -0.126 7.126 8 F -0.134 7.134 9 C -0.071 4.071 10 C -0.214 4.214 11 C -0.064 4.064 12 C -0.002 4.002 13 C -0.575 4.575 14 H 0.085 0.915 15 C -0.198 4.198 16 N -0.576 5.576 17 Si 0.786 3.214 18 H -0.199 1.199 19 H -0.214 1.214 20 H -0.185 1.185 21 H 0.124 0.876 22 H 0.103 0.897 23 H 0.099 0.901 24 H 0.225 0.775 25 H 0.092 0.908 26 H 0.088 0.912 27 H 0.003 0.997 28 H 0.012 0.988 29 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.979 11.388 9.354 15.904 hybrid contribution 0.106 -1.471 -0.591 1.589 sum 6.085 9.917 8.763 14.566 Atomic orbital electron populations 1.20404 0.83931 1.04257 1.04784 1.23089 0.98677 0.89758 0.95142 1.77405 0.84497 1.22808 1.27133 1.49324 1.05373 1.05901 1.65093 1.17133 0.75473 0.75444 0.74958 1.93286 1.90454 1.32832 1.95762 1.93332 1.71962 1.92251 1.55068 1.93339 1.78519 1.95038 1.46515 1.22780 1.00996 0.82628 1.00710 1.20641 0.91797 0.97691 1.11311 1.19931 1.00796 0.87726 0.97990 1.18938 0.94617 0.94618 0.91999 1.21730 1.43939 0.98620 0.93198 0.91538 1.25937 0.95904 1.02581 0.95333 1.70114 1.50181 1.38829 0.98442 0.85504 0.78737 0.79568 0.77581 1.19853 1.21370 1.18521 0.87641 0.89733 0.90086 0.77505 0.90781 0.91152 0.99674 0.98831 0.93009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.03 10.21 71.23 0.73 -1.31 15 2 C 0.10 3.43 7.22 43.10 0.31 3.74 15 3 N -0.30 -10.18 12.24 -47.39 -0.58 -10.76 15 4 N -0.46 -14.32 3.88 -362.44 -1.41 -15.73 15 5 C 0.70 18.11 3.99 127.77 0.51 18.62 15 6 F -0.14 -3.69 17.15 44.97 0.77 -2.91 15 7 F -0.14 -3.24 17.39 44.97 0.78 -2.46 15 8 F -0.15 -3.86 17.51 44.97 0.79 -3.07 15 9 C 0.07 2.05 11.29 83.54 0.94 2.99 15 10 C -0.20 -7.09 5.35 -20.15 -0.11 -7.20 15 11 C -0.03 -0.98 5.27 29.85 0.16 -0.83 15 12 C 0.04 1.78 4.96 29.85 0.15 1.93 15 13 C -0.54 -29.03 9.11 25.60 0.23 -28.80 15 14 H 0.07 3.38 7.74 -2.91 -0.02 3.36 15 15 C 0.00 0.00 5.46 84.65 0.46 0.46 15 16 N -0.94 -56.05 13.29 21.45 0.28 -55.77 15 17 Si 0.96 42.97 29.54 68.60 2.03 45.00 15 18 H -0.27 -11.81 7.11 99.48 0.71 -11.10 15 19 H -0.29 -12.81 7.11 99.48 0.71 -12.10 15 20 H -0.26 -11.05 7.11 99.48 0.71 -10.34 15 21 H 0.11 2.27 8.14 -2.39 -0.02 2.25 15 22 H 0.08 2.07 8.14 -2.38 -0.02 2.05 15 23 H 0.08 2.42 7.70 -2.39 -0.02 2.41 15 24 H 0.21 5.02 8.06 -2.91 -0.02 5.00 15 25 H 0.07 2.63 8.09 -2.39 -0.02 2.61 15 26 H 0.07 2.49 8.14 -2.39 -0.02 2.47 15 27 H -0.02 -0.84 8.14 -2.39 -0.02 -0.86 15 28 H -0.01 -0.37 7.88 -2.39 -0.02 -0.38 15 29 H 0.26 14.80 8.31 -92.71 -0.77 14.03 15 Total: -1.00 -63.90 275.51 7.22 -56.69 By element: Atomic # 1 Polarization: -1.77 SS G_CDS: 1.17 Total: -0.60 kcal Atomic # 6 Polarization: -13.78 SS G_CDS: 3.38 Total: -10.39 kcal Atomic # 7 Polarization: -80.55 SS G_CDS: -1.70 Total: -82.25 kcal Atomic # 9 Polarization: -10.78 SS G_CDS: 2.34 Total: -8.44 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Total: -63.90 7.22 -56.69 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259812454.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.614 kcal (2) G-P(sol) polarization free energy of solvation -63.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds