Wall clock time and date at job start Mon Mar 30 2020 05:57:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86794 * 120.00290 * 2 1 4 4 H 1.48501 * 109.47443 * 269.99913 * 3 2 1 5 5 H 1.48496 * 109.47249 * 29.99978 * 3 2 1 6 6 H 1.48508 * 109.47515 * 150.00146 * 3 2 1 7 7 C 1.37885 * 119.99803 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99860 * 0.02562 * 7 2 1 9 9 C 1.50700 * 119.99748 * 179.97438 * 7 2 1 10 10 H 1.09000 * 109.61626 * 59.65404 * 9 7 2 11 11 N 1.46890 * 109.76125 * 299.20905 * 9 7 2 12 12 C 1.46993 * 111.20839 * 187.65604 * 11 9 7 13 13 C 1.53304 * 109.09440 * 71.83115 * 12 11 9 14 14 C 1.51673 * 108.09103 * 311.05923 * 13 12 11 15 15 S 1.75459 * 125.52361 * 195.63175 * 14 13 12 16 16 C 1.75822 * 91.45916 * 179.97438 * 15 14 13 17 17 C 1.41933 * 142.73393 * 179.97438 * 16 15 14 18 18 C 1.34346 * 107.71234 * 180.02562 * 17 16 15 19 19 N 1.36587 * 109.08399 * 0.02562 * 18 17 16 20 20 H 0.96996 * 125.65182 * 180.02562 * 19 18 17 21 21 C 1.37171 * 109.64980 * 0.02562 * 16 15 14 22 22 C 1.34158 * 123.79789 * 15.60072 * 14 13 12 23 23 H 0.97002 * 119.99566 * 359.97438 * 1 2 3 24 24 H 1.00908 * 111.00404 * 311.76219 * 11 9 7 25 25 H 1.09002 * 109.53848 * 191.71712 * 12 11 9 26 26 H 1.09000 * 109.53363 * 311.87607 * 12 11 9 27 27 H 1.09000 * 109.74288 * 191.40780 * 13 12 11 28 28 H 1.09002 * 109.73917 * 70.70345 * 13 12 11 29 29 H 1.08008 * 126.14216 * 0.07245 * 17 16 15 30 30 H 1.07999 * 125.45605 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 1 3.8778 -0.6748 0.8855 11 7 4.0077 -0.5203 -1.2073 12 6 5.4656 -0.6596 -1.3329 13 6 5.8003 -2.1070 -1.7115 14 6 5.0467 -3.0265 -0.7697 15 16 5.3771 -4.7328 -0.5293 16 6 4.0766 -4.8651 0.6465 17 6 3.4190 -5.7846 1.5047 18 6 2.4453 -5.1189 2.1478 19 7 2.4503 -3.8156 1.7392 20 1 1.8471 -3.1230 2.0511 21 6 3.4674 -3.6457 0.7995 22 6 4.0228 -2.6291 0.0008 23 1 -0.4849 0.8401 0.0004 24 1 3.5392 -0.8646 -2.0321 25 1 5.8307 0.0137 -2.1085 26 1 5.9386 -0.4116 -0.3827 27 1 6.8725 -2.2754 -1.6107 28 1 5.4918 -2.2995 -2.7390 29 1 3.6588 -6.8314 1.6205 30 1 1.7672 -5.5459 2.8719 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259816106.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:09 Heat of formation + Delta-G solvation = 68.012352 kcal Electronic energy + Delta-G solvation = -15947.234337 eV Core-core repulsion = 13448.278909 eV Total energy + Delta-G solvation = -2498.955428 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.068 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.61381 -37.88865 -33.18044 -32.77256 -30.66398 -30.14287 -27.38357 -25.39432 -22.98254 -21.95284 -20.45123 -19.83031 -18.60248 -17.41129 -16.86779 -15.05292 -14.72918 -14.26812 -14.14630 -13.97171 -13.45120 -13.25435 -12.79561 -12.46380 -12.43838 -12.24342 -11.59746 -11.49281 -10.85710 -10.64839 -10.51464 -10.39774 -10.04737 -9.85024 -9.40709 -8.80313 -8.67148 -7.57481 -7.36789 -6.91984 -6.17343 -4.29549 1.68725 2.16899 2.70474 3.10340 3.46847 3.49256 3.52015 3.64961 3.81314 4.50572 4.96571 5.21848 5.42131 5.43346 5.51111 5.63930 5.73615 5.81698 5.99909 6.10783 6.21319 6.34498 6.36928 6.69687 6.77142 6.85462 7.13595 7.42283 7.54213 7.99425 8.09673 8.14343 8.52649 8.80328 9.44492 10.90915 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.023384 B = 0.010506 C = 0.007597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.104836 B = 2664.425312 C = 3684.693670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.084 3.916 3 Si 0.927 3.073 4 H -0.277 1.277 5 H -0.314 1.314 6 H -0.269 1.269 7 C -0.528 4.528 8 H 0.075 0.925 9 C 0.236 3.764 10 H 0.055 0.945 11 N -0.683 5.683 12 C 0.056 3.944 13 C -0.072 4.072 14 C -0.199 4.199 15 S 0.068 5.932 16 C -0.218 4.218 17 C -0.177 4.177 18 C 0.030 3.970 19 N -0.541 5.541 20 H 0.426 0.574 21 C 0.082 3.918 22 C -0.061 4.061 23 H 0.266 0.734 24 H 0.343 0.657 25 H 0.071 0.929 26 H 0.067 0.933 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.135 0.865 30 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.727 -6.446 0.998 10.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.121 4.121 3 Si 0.758 3.242 4 H -0.202 1.202 5 H -0.243 1.243 6 H -0.194 1.194 7 C -0.566 4.566 8 H 0.093 0.907 9 C 0.126 3.874 10 H 0.073 0.927 11 N -0.313 5.313 12 C -0.076 4.076 13 C -0.113 4.113 14 C -0.316 4.316 15 S 0.329 5.671 16 C -0.338 4.338 17 C -0.207 4.207 18 C -0.104 4.104 19 N -0.140 5.140 20 H 0.266 0.734 21 C -0.035 4.035 22 C -0.076 4.076 23 H 0.075 0.925 24 H 0.162 0.838 25 H 0.089 0.911 26 H 0.085 0.915 27 H 0.089 0.911 28 H 0.091 0.909 29 H 0.153 0.847 30 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 9.530 -6.610 0.753 11.623 hybrid contribution -0.955 0.941 0.411 1.402 sum 8.574 -5.670 1.164 10.345 Atomic orbital electron populations 1.69938 1.06754 1.27651 1.48582 1.25037 0.94652 1.00056 0.92348 0.85994 0.78782 0.80855 0.78581 1.20238 1.24344 1.19437 1.20841 0.87294 0.94663 1.53829 0.90711 1.18887 0.95708 0.82770 0.90073 0.92717 1.61078 1.02255 1.60488 1.07457 1.22094 0.91570 0.92658 1.01272 1.20957 0.98431 0.95189 0.96709 1.24024 1.03758 0.96732 1.07080 1.83141 1.34894 1.06533 1.42505 1.22523 1.05067 0.98265 1.07957 1.19919 1.00070 0.98468 1.02221 1.21712 1.01901 0.83739 1.03049 1.42258 1.28028 1.09917 1.33834 0.73388 1.18038 0.93820 0.93926 0.97742 1.19838 0.94362 0.98327 0.95071 0.92455 0.83757 0.91105 0.91457 0.91073 0.90922 0.84733 0.81488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.94 13.96 55.43 0.77 -25.16 16 2 C 0.08 2.31 5.47 -17.82 -0.10 2.21 16 3 Si 0.93 22.57 26.09 -169.99 -4.44 18.13 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.31 -7.76 7.11 56.52 0.40 -7.36 16 6 H -0.27 -6.45 6.53 56.52 0.37 -6.08 16 7 C -0.53 -13.87 8.54 -34.44 -0.29 -14.16 16 8 H 0.07 2.14 6.95 -52.49 -0.36 1.77 16 9 C 0.24 5.41 2.10 -69.21 -0.15 5.26 16 10 H 0.06 1.33 7.18 -51.93 -0.37 0.96 16 11 N -0.68 -14.27 4.22 -108.08 -0.46 -14.72 16 12 C 0.06 0.94 6.59 -3.62 -0.02 0.91 16 13 C -0.07 -1.13 6.39 -27.25 -0.17 -1.30 16 14 C -0.20 -3.78 6.38 -35.27 -0.23 -4.00 16 15 S 0.07 1.19 23.28 -107.50 -2.50 -1.31 16 16 C -0.22 -4.22 7.30 -38.56 -0.28 -4.50 16 17 C -0.18 -2.94 10.86 -39.54 -0.43 -3.37 16 18 C 0.03 0.46 11.87 -16.81 -0.20 0.26 16 19 N -0.54 -10.14 5.80 -10.70 -0.06 -10.20 16 20 H 0.43 7.92 8.45 -40.82 -0.34 7.58 16 21 C 0.08 1.72 6.62 -83.82 -0.55 1.17 16 22 C -0.06 -1.30 5.46 -104.31 -0.57 -1.87 16 23 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 24 H 0.34 7.24 8.57 -39.29 -0.34 6.91 16 25 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 26 H 0.07 1.15 8.06 -51.93 -0.42 0.73 16 27 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.13 1.85 8.06 -52.48 -0.42 1.43 16 30 H 0.17 1.87 8.06 -52.49 -0.42 1.45 16 LS Contribution 259.73 15.07 3.91 3.91 Total: -1.00 -30.01 259.73 -8.88 -38.89 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -3.12 Total: 9.84 kcal Atomic # 6 Polarization: -16.39 SS G_CDS: -2.99 Total: -19.38 kcal Atomic # 7 Polarization: -50.34 SS G_CDS: 0.26 Total: -50.08 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -4.44 Total: 18.13 kcal Atomic # 16 Polarization: 1.19 SS G_CDS: -2.50 Total: -1.31 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -30.01 -8.88 -38.89 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259816106.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.902 kcal (2) G-P(sol) polarization free energy of solvation -30.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds