Wall clock time and date at job start Mon Mar 30 2020 05:57:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86794 * 120.00290 * 2 1 4 4 H 1.48501 * 109.47443 * 269.99913 * 3 2 1 5 5 H 1.48496 * 109.47249 * 29.99978 * 3 2 1 6 6 H 1.48508 * 109.47515 * 150.00146 * 3 2 1 7 7 C 1.37885 * 119.99803 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99860 * 0.02562 * 7 2 1 9 9 C 1.50700 * 119.99748 * 179.97438 * 7 2 1 10 10 H 1.09000 * 109.61626 * 59.65404 * 9 7 2 11 11 N 1.46890 * 109.76125 * 299.20905 * 9 7 2 12 12 C 1.46993 * 111.20839 * 187.65604 * 11 9 7 13 13 C 1.53304 * 109.09440 * 71.83115 * 12 11 9 14 14 C 1.51673 * 108.09103 * 311.05923 * 13 12 11 15 15 S 1.75459 * 125.52361 * 195.63175 * 14 13 12 16 16 C 1.75822 * 91.45916 * 179.97438 * 15 14 13 17 17 C 1.41933 * 142.73393 * 179.97438 * 16 15 14 18 18 C 1.34346 * 107.71234 * 180.02562 * 17 16 15 19 19 N 1.36587 * 109.08399 * 0.02562 * 18 17 16 20 20 H 0.96996 * 125.65182 * 180.02562 * 19 18 17 21 21 C 1.37171 * 109.64980 * 0.02562 * 16 15 14 22 22 C 1.34158 * 123.79789 * 15.60072 * 14 13 12 23 23 H 0.97002 * 119.99566 * 359.97438 * 1 2 3 24 24 H 1.00908 * 111.00404 * 311.76219 * 11 9 7 25 25 H 1.09002 * 109.53848 * 191.71712 * 12 11 9 26 26 H 1.09000 * 109.53363 * 311.87607 * 12 11 9 27 27 H 1.09000 * 109.74288 * 191.40780 * 13 12 11 28 28 H 1.09002 * 109.73917 * 70.70345 * 13 12 11 29 29 H 1.08008 * 126.14216 * 0.07245 * 17 16 15 30 30 H 1.07999 * 125.45605 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 1 3.8778 -0.6748 0.8855 11 7 4.0077 -0.5203 -1.2073 12 6 5.4656 -0.6596 -1.3329 13 6 5.8003 -2.1070 -1.7115 14 6 5.0467 -3.0265 -0.7697 15 16 5.3771 -4.7328 -0.5293 16 6 4.0766 -4.8651 0.6465 17 6 3.4190 -5.7846 1.5047 18 6 2.4453 -5.1189 2.1478 19 7 2.4503 -3.8156 1.7392 20 1 1.8471 -3.1230 2.0511 21 6 3.4674 -3.6457 0.7995 22 6 4.0228 -2.6291 0.0008 23 1 -0.4849 0.8401 0.0004 24 1 3.5392 -0.8646 -2.0321 25 1 5.8307 0.0137 -2.1085 26 1 5.9386 -0.4116 -0.3827 27 1 6.8725 -2.2754 -1.6107 28 1 5.4918 -2.2995 -2.7390 29 1 3.6588 -6.8314 1.6205 30 1 1.7672 -5.5459 2.8719 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259816106.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:09 Heat of formation + Delta-G solvation = 47.940636 kcal Electronic energy + Delta-G solvation = -15948.104712 eV Core-core repulsion = 13448.278909 eV Total energy + Delta-G solvation = -2499.825803 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.068 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.99596 -39.39266 -34.98260 -34.39174 -32.33036 -31.52242 -28.90456 -27.08465 -24.53151 -23.51674 -21.90962 -21.20255 -20.06248 -19.00835 -18.68692 -16.71146 -16.32184 -15.76188 -15.64528 -15.44841 -14.99261 -14.79153 -14.37395 -14.01969 -13.92110 -13.71810 -13.05919 -12.97865 -12.70921 -12.33686 -11.98161 -11.87585 -11.76295 -11.59329 -11.29399 -10.78944 -10.21676 -9.16789 -8.76784 -8.31854 -8.28446 -6.42082 0.24138 0.77539 1.24916 1.49256 1.54587 1.69038 1.83025 1.97607 2.45378 2.49658 3.02995 3.74982 3.87430 4.13324 4.24016 4.27142 4.42143 4.50836 4.61369 4.82682 4.92536 4.95049 5.04794 5.11289 5.21787 5.36251 5.61709 5.83245 6.06070 6.14527 6.34125 6.69100 6.75009 6.77793 7.34162 8.82744 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.023384 B = 0.010506 C = 0.007597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.104836 B = 2664.425312 C = 3684.693670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C 0.037 3.963 3 Si 0.986 3.014 4 H -0.272 1.272 5 H -0.320 1.320 6 H -0.264 1.264 7 C -0.516 4.516 8 H 0.042 0.958 9 C 0.246 3.754 10 H 0.036 0.964 11 N -0.693 5.693 12 C 0.056 3.944 13 C -0.067 4.067 14 C -0.200 4.200 15 S 0.114 5.886 16 C -0.240 4.240 17 C -0.188 4.188 18 C 0.042 3.958 19 N -0.554 5.554 20 H 0.421 0.579 21 C 0.038 3.962 22 C -0.100 4.100 23 H 0.266 0.734 24 H 0.341 0.659 25 H 0.102 0.898 26 H 0.064 0.936 27 H 0.101 0.899 28 H 0.087 0.913 29 H 0.165 0.835 30 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.801 -7.263 0.568 13.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.163 4.163 3 Si 0.816 3.184 4 H -0.198 1.198 5 H -0.250 1.250 6 H -0.189 1.189 7 C -0.554 4.554 8 H 0.060 0.940 9 C 0.135 3.865 10 H 0.054 0.946 11 N -0.323 5.323 12 C -0.075 4.075 13 C -0.108 4.108 14 C -0.317 4.317 15 S 0.375 5.625 16 C -0.360 4.360 17 C -0.217 4.217 18 C -0.091 4.091 19 N -0.154 5.154 20 H 0.259 0.741 21 C -0.078 4.078 22 C -0.115 4.115 23 H 0.075 0.925 24 H 0.159 0.841 25 H 0.120 0.880 26 H 0.082 0.918 27 H 0.119 0.881 28 H 0.105 0.895 29 H 0.182 0.818 30 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 11.641 -7.450 0.315 13.825 hybrid contribution -1.566 1.048 0.560 1.966 sum 10.075 -6.402 0.875 11.969 Atomic orbital electron populations 1.70048 1.08234 1.28238 1.51186 1.25722 0.95098 1.02992 0.92501 0.85055 0.77601 0.77258 0.78511 1.19808 1.25004 1.18856 1.20962 0.89385 0.93081 1.52022 0.94019 1.18462 0.93337 0.84419 0.90289 0.94596 1.60855 1.04881 1.60206 1.06362 1.22223 0.88704 0.94283 1.02302 1.21054 0.99795 0.93464 0.96519 1.24548 1.02785 0.98264 1.06095 1.82855 1.33553 1.04777 1.41270 1.23064 1.05753 0.98436 1.08751 1.20378 0.99946 0.99662 1.01730 1.22511 1.01751 0.82267 1.02601 1.42433 1.27865 1.11035 1.34022 0.74073 1.18368 0.95374 0.94789 0.99289 1.19793 0.96457 0.97724 0.97561 0.92527 0.84078 0.88027 0.91773 0.88060 0.89468 0.81778 0.77181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.23 13.96 21.45 0.30 -55.93 16 2 C 0.04 2.08 5.47 84.66 0.46 2.55 16 3 Si 0.99 47.21 26.09 68.60 1.79 49.00 16 4 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 5 H -0.32 -15.50 7.11 99.48 0.71 -14.79 16 6 H -0.26 -12.24 6.53 99.48 0.65 -11.59 16 7 C -0.52 -27.95 8.54 25.60 0.22 -27.73 16 8 H 0.04 2.49 6.95 -2.91 -0.02 2.47 16 9 C 0.25 11.38 2.10 43.95 0.09 11.47 16 10 H 0.04 1.78 7.18 -2.39 -0.02 1.77 16 11 N -0.69 -28.22 4.22 -495.85 -2.09 -30.31 16 12 C 0.06 1.72 6.59 86.39 0.57 2.29 16 13 C -0.07 -1.91 6.39 30.26 0.19 -1.72 16 14 C -0.20 -7.24 6.38 25.07 0.16 -7.08 16 15 S 0.11 3.74 23.28 -56.49 -1.32 2.42 16 16 C -0.24 -8.98 7.30 22.93 0.17 -8.82 16 17 C -0.19 -5.86 10.86 22.30 0.24 -5.62 16 18 C 0.04 1.23 11.87 83.06 0.99 2.21 16 19 N -0.55 -21.00 5.80 -187.78 -1.09 -22.09 16 20 H 0.42 16.31 8.45 -92.71 -0.78 15.53 16 21 C 0.04 1.61 6.62 38.27 0.25 1.86 16 22 C -0.10 -4.27 5.46 -19.66 -0.11 -4.38 16 23 H 0.27 15.12 8.31 -92.71 -0.77 14.34 16 24 H 0.34 14.10 8.57 -89.69 -0.77 13.33 16 25 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 26 H 0.06 2.04 8.06 -2.39 -0.02 2.02 16 27 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 28 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 29 H 0.16 3.99 8.06 -2.91 -0.02 3.97 16 30 H 0.21 4.08 8.06 -2.91 -0.02 4.06 16 Total: -1.00 -66.14 259.73 0.41 -65.73 By element: Atomic # 1 Polarization: 26.55 SS G_CDS: -0.42 Total: 26.13 kcal Atomic # 6 Polarization: -38.19 SS G_CDS: 3.24 Total: -34.96 kcal Atomic # 7 Polarization: -105.45 SS G_CDS: -2.88 Total: -108.33 kcal Atomic # 14 Polarization: 47.21 SS G_CDS: 1.79 Total: 49.00 kcal Atomic # 16 Polarization: 3.74 SS G_CDS: -1.32 Total: 2.42 kcal Total: -66.14 0.41 -65.73 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259816106.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.671 kcal (2) G-P(sol) polarization free energy of solvation -66.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds