Wall clock time and date at job start Mon Mar 30 2020 06:02:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31027 * 125.56514 * 2 1 4 4 N 1.40034 * 108.93390 * 179.77615 * 3 2 1 5 5 H 0.96991 * 126.16317 * 180.24106 * 4 3 2 6 6 C 1.36947 * 107.67826 * 0.37258 * 4 3 2 7 7 C 1.46215 * 126.54657 * 179.90703 * 6 4 3 8 8 S 1.75670 * 125.24244 * 176.28240 * 7 6 4 9 9 C 1.75469 * 92.09845 * 180.17864 * 8 7 6 10 10 C 1.32470 * 111.42508 * 359.82845 * 9 8 7 11 11 C 1.39614 * 125.24529 * 356.14941 * 7 6 4 12 12 C 1.40483 * 123.75487 * 0.03820 * 11 7 6 13 13 H 1.08002 * 119.99627 * 327.98917 * 12 11 7 14 14 C 1.39793 * 120.00433 * 147.98822 * 12 11 7 15 15 N 1.31005 * 119.99903 * 342.38423 * 14 12 11 16 16 Si 1.86806 * 120.00375 * 162.38888 * 14 12 11 17 17 H 1.48497 * 109.47288 * 179.97438 * 16 14 12 18 18 H 1.48497 * 109.47013 * 59.99427 * 16 14 12 19 19 H 1.48506 * 109.46734 * 299.99974 * 16 14 12 20 20 C 1.38744 * 106.90067 * 359.63752 * 6 4 3 21 21 C 1.50700 * 126.19516 * 180.22849 * 20 6 4 22 22 H 1.09005 * 109.47100 * 270.00002 * 1 2 3 23 23 H 1.09004 * 109.47087 * 29.99121 * 1 2 3 24 24 H 1.08994 * 109.47327 * 149.99453 * 1 2 3 25 25 H 1.07999 * 124.28579 * 179.79165 * 9 8 7 26 26 H 1.08004 * 122.76487 * 180.02562 * 10 9 8 27 27 H 0.96998 * 119.99869 * 353.90625 * 15 14 12 28 28 H 1.08997 * 109.47564 * 90.00420 * 21 20 6 29 29 H 1.09006 * 109.46988 * 210.00596 * 21 20 6 30 30 H 1.09001 * 109.47255 * 329.99927 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2691 1.0658 0.0000 4 7 3.6108 0.6651 0.0052 5 1 4.3833 1.2515 0.0096 6 6 3.6359 -0.7042 -0.0001 7 6 4.8262 -1.5532 0.0006 8 16 4.8198 -3.3078 0.0867 9 6 6.5723 -3.3810 0.0357 10 6 7.1050 -2.1708 -0.0439 11 6 6.1430 -1.0946 -0.0697 12 6 6.4933 0.2635 -0.1504 13 1 5.8427 0.9596 -0.6588 14 6 7.6840 0.7138 0.4272 15 7 8.2967 -0.0209 1.3222 16 14 8.4015 2.3632 -0.0771 17 1 9.6579 2.6076 0.6760 18 1 7.4258 3.4409 0.2258 19 1 8.6909 2.3526 -1.5336 20 6 2.3159 -1.1317 -0.0001 21 6 1.8441 -2.5630 -0.0001 22 1 -0.3633 0.0000 1.0277 23 1 -0.3633 0.8901 -0.5137 24 1 -0.3634 -0.8899 -0.5139 25 1 7.1440 -4.2967 0.0659 26 1 8.1711 -2.0031 -0.0864 27 1 7.8810 -0.8340 1.6492 28 1 1.7303 -2.9081 1.0275 29 1 0.8851 -2.6293 -0.5140 30 1 2.5755 -3.1867 -0.5140 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259837659.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:08 Heat of formation + Delta-G solvation = 67.691289 kcal Electronic energy + Delta-G solvation = -15512.134112 eV Core-core repulsion = 13013.164761 eV Total energy + Delta-G solvation = -2498.969351 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.068 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.01389 -36.83404 -33.14945 -32.52449 -31.51843 -28.86242 -26.93051 -26.44373 -24.59551 -22.33901 -20.12244 -19.18051 -18.49589 -17.63426 -16.00693 -15.18329 -14.45809 -14.27824 -14.01425 -13.46363 -13.00642 -12.71022 -12.47583 -12.30762 -12.10084 -11.97261 -11.72644 -11.57042 -11.22863 -11.11557 -10.71033 -10.54887 -10.11103 -9.87982 -9.54817 -9.19604 -8.88842 -7.96386 -7.60671 -7.42348 -6.92940 -4.74614 1.76554 2.76024 2.92571 2.99954 3.05349 3.18287 3.25868 3.47584 3.78099 3.92586 4.02610 4.80581 5.40555 5.57633 5.76392 5.86444 5.96430 6.07893 6.11070 6.33144 6.39117 6.54171 6.61553 6.73387 6.82917 6.87843 7.03244 7.24813 7.50009 7.62210 7.69720 8.14167 8.30451 8.41150 8.70399 9.72290 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.021016 B = 0.009408 C = 0.006663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.977641 B = 2975.504797 C = 4201.210824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.077 3.923 3 N -0.339 5.339 4 N -0.478 5.478 5 H 0.439 0.561 6 C 0.249 3.751 7 C -0.332 4.332 8 S 0.037 5.963 9 C -0.211 4.211 10 C -0.141 4.141 11 C 0.099 3.901 12 C -0.485 4.485 13 H 0.079 0.921 14 C 0.037 3.963 15 N -0.785 5.785 16 Si 1.065 2.935 17 H -0.269 1.269 18 H -0.271 1.271 19 H -0.271 1.271 20 C -0.306 4.306 21 C -0.056 4.056 22 H 0.067 0.933 23 H 0.063 0.937 24 H 0.069 0.931 25 H 0.142 0.858 26 H 0.128 0.872 27 H 0.300 0.700 28 H 0.047 0.953 29 H 0.051 0.949 30 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.386 -2.416 -1.636 5.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.087 4.087 3 N -0.164 5.164 4 N -0.191 5.191 5 H 0.289 0.711 6 C 0.120 3.880 7 C -0.450 4.450 8 S 0.296 5.704 9 C -0.346 4.346 10 C -0.174 4.174 11 C 0.088 3.912 12 C -0.518 4.518 13 H 0.097 0.903 14 C -0.187 4.187 15 N -0.409 5.409 16 Si 0.888 3.112 17 H -0.193 1.193 18 H -0.196 1.196 19 H -0.196 1.196 20 C -0.318 4.318 21 C -0.115 4.115 22 H 0.086 0.914 23 H 0.082 0.918 24 H 0.088 0.912 25 H 0.160 0.840 26 H 0.145 0.855 27 H 0.114 0.886 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.211 -1.249 -1.273 4.573 hybrid contribution 0.434 -0.637 -0.299 0.827 sum -3.777 -1.886 -1.571 4.505 Atomic orbital electron populations 1.20049 0.88163 1.02205 1.01979 1.21640 0.95913 0.90816 1.00350 1.76975 0.87082 1.22645 1.29671 1.46954 1.06282 1.05013 1.60819 0.71067 1.18682 0.92010 0.83036 0.94303 1.21163 0.93034 0.93074 1.37742 1.83086 1.01614 1.04288 1.81434 1.25219 0.99067 1.00650 1.09642 1.21341 1.00079 0.91998 1.03963 1.18077 0.88981 0.93607 0.90557 1.20095 1.06858 0.93241 1.31592 0.90287 1.27162 0.93255 1.05425 0.92811 1.70545 1.38821 1.13222 1.18263 0.83597 0.77485 0.72638 0.77520 1.19322 1.19646 1.19631 1.19814 0.90639 0.95689 1.25612 1.19880 0.99480 0.91775 1.00350 0.91409 0.91766 0.91191 0.83982 0.85463 0.88633 0.93379 0.92989 0.92270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.97 10.24 36.00 0.37 -0.61 16 2 C 0.08 1.56 7.17 -82.61 -0.59 0.97 16 3 N -0.34 -7.59 12.66 33.55 0.42 -7.17 16 4 N -0.48 -11.13 7.10 33.39 0.24 -10.89 16 5 H 0.44 9.93 5.81 -182.66 -1.06 8.86 16 6 C 0.25 5.91 7.02 -82.19 -0.58 5.33 16 7 C -0.33 -7.93 6.50 -35.87 -0.23 -8.16 16 8 S 0.04 0.76 19.92 -107.50 -2.14 -1.38 16 9 C -0.21 -4.25 11.05 28.81 0.32 -3.93 16 10 C -0.14 -3.16 8.17 -39.09 -0.32 -3.48 16 11 C 0.10 2.42 5.26 -106.13 -0.56 1.87 16 12 C -0.48 -11.70 7.97 -38.16 -0.30 -12.01 16 13 H 0.08 1.86 5.63 -52.49 -0.30 1.57 16 14 C 0.04 0.85 5.26 -17.32 -0.09 0.75 16 15 N -0.79 -19.07 12.69 55.54 0.71 -18.37 16 16 Si 1.07 19.83 29.97 -169.99 -5.09 14.74 16 17 H -0.27 -5.00 7.11 56.52 0.40 -4.60 16 18 H -0.27 -4.86 7.11 56.52 0.40 -4.45 16 19 H -0.27 -4.87 7.11 56.52 0.40 -4.47 16 20 C -0.31 -6.57 6.19 -104.11 -0.64 -7.22 16 21 C -0.06 -1.01 9.36 36.01 0.34 -0.67 16 22 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 23 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 24 H 0.07 0.91 7.21 -51.93 -0.37 0.53 16 25 H 0.14 2.39 8.06 -52.49 -0.42 1.96 16 26 H 0.13 2.83 7.25 -52.48 -0.38 2.45 16 27 H 0.30 7.45 6.38 -40.82 -0.26 7.19 16 28 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.05 0.79 7.21 -51.93 -0.37 0.42 16 30 H 0.06 1.08 5.53 -48.08 -0.27 0.82 16 LS Contribution 265.35 15.07 4.00 4.00 Total: -1.00 -26.93 265.35 -7.67 -34.60 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -3.50 Total: 11.63 kcal Atomic # 6 Polarization: -24.86 SS G_CDS: -2.30 Total: -27.15 kcal Atomic # 7 Polarization: -37.79 SS G_CDS: 1.37 Total: -36.43 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.09 Total: 14.74 kcal Atomic # 16 Polarization: 0.76 SS G_CDS: -2.14 Total: -1.38 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -26.93 -7.67 -34.60 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259837659.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.287 kcal (2) G-P(sol) polarization free energy of solvation -26.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds