Wall clock time and date at job start Mon Mar 30 2020 06:02:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31027 * 125.56514 * 2 1 4 4 N 1.40034 * 108.93390 * 179.77615 * 3 2 1 5 5 H 0.96991 * 126.16317 * 180.24106 * 4 3 2 6 6 C 1.36947 * 107.67826 * 0.37258 * 4 3 2 7 7 C 1.46215 * 126.54657 * 179.90703 * 6 4 3 8 8 S 1.75670 * 125.24244 * 176.28240 * 7 6 4 9 9 C 1.75469 * 92.09845 * 180.17864 * 8 7 6 10 10 C 1.32470 * 111.42508 * 359.82845 * 9 8 7 11 11 C 1.39614 * 125.24529 * 356.14941 * 7 6 4 12 12 C 1.40483 * 123.75487 * 0.03820 * 11 7 6 13 13 H 1.08002 * 119.99627 * 327.98917 * 12 11 7 14 14 C 1.39793 * 120.00433 * 147.98822 * 12 11 7 15 15 N 1.31005 * 119.99903 * 342.38423 * 14 12 11 16 16 Si 1.86806 * 120.00375 * 162.38888 * 14 12 11 17 17 H 1.48497 * 109.47288 * 179.97438 * 16 14 12 18 18 H 1.48497 * 109.47013 * 59.99427 * 16 14 12 19 19 H 1.48506 * 109.46734 * 299.99974 * 16 14 12 20 20 C 1.38744 * 106.90067 * 359.63752 * 6 4 3 21 21 C 1.50700 * 126.19516 * 180.22849 * 20 6 4 22 22 H 1.09005 * 109.47100 * 270.00002 * 1 2 3 23 23 H 1.09004 * 109.47087 * 29.99121 * 1 2 3 24 24 H 1.08994 * 109.47327 * 149.99453 * 1 2 3 25 25 H 1.07999 * 124.28579 * 179.79165 * 9 8 7 26 26 H 1.08004 * 122.76487 * 180.02562 * 10 9 8 27 27 H 0.96998 * 119.99869 * 353.90625 * 15 14 12 28 28 H 1.08997 * 109.47564 * 90.00420 * 21 20 6 29 29 H 1.09006 * 109.46988 * 210.00596 * 21 20 6 30 30 H 1.09001 * 109.47255 * 329.99927 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2691 1.0658 0.0000 4 7 3.6108 0.6651 0.0052 5 1 4.3833 1.2515 0.0096 6 6 3.6359 -0.7042 -0.0001 7 6 4.8262 -1.5532 0.0006 8 16 4.8198 -3.3078 0.0867 9 6 6.5723 -3.3810 0.0357 10 6 7.1050 -2.1708 -0.0439 11 6 6.1430 -1.0946 -0.0697 12 6 6.4933 0.2635 -0.1504 13 1 5.8427 0.9596 -0.6588 14 6 7.6840 0.7138 0.4272 15 7 8.2967 -0.0209 1.3222 16 14 8.4015 2.3632 -0.0771 17 1 9.6579 2.6076 0.6760 18 1 7.4258 3.4409 0.2258 19 1 8.6909 2.3526 -1.5336 20 6 2.3159 -1.1317 -0.0001 21 6 1.8441 -2.5630 -0.0001 22 1 -0.3633 0.0000 1.0277 23 1 -0.3633 0.8901 -0.5137 24 1 -0.3634 -0.8899 -0.5139 25 1 7.1440 -4.2967 0.0659 26 1 8.1711 -2.0031 -0.0864 27 1 7.8810 -0.8340 1.6492 28 1 1.7303 -2.9081 1.0275 29 1 0.8851 -2.6293 -0.5140 30 1 2.5755 -3.1867 -0.5140 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259837659.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:08 Heat of formation + Delta-G solvation = 52.935543 kcal Electronic energy + Delta-G solvation = -15512.773969 eV Core-core repulsion = 13013.164761 eV Total energy + Delta-G solvation = -2499.609208 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.068 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.68075 -38.55530 -34.88562 -34.06399 -33.14025 -30.45536 -28.42931 -28.10428 -26.25732 -24.03760 -21.78719 -20.88856 -20.10689 -19.36261 -17.68357 -16.85835 -16.09695 -15.86794 -15.58124 -15.16609 -14.54185 -14.20066 -13.93748 -13.78714 -13.61019 -13.46192 -13.21911 -12.97968 -12.78881 -12.67765 -12.36785 -12.03414 -11.77471 -11.52444 -11.20233 -10.88614 -10.57706 -9.65154 -9.39538 -9.12054 -8.63139 -6.54799 0.03823 1.10507 1.31947 1.43847 1.45524 1.54228 1.73271 1.86027 2.20978 2.24598 2.32724 3.02627 3.92513 4.08215 4.26085 4.42897 4.58427 4.73498 4.82326 4.83548 4.98693 5.04972 5.11496 5.16453 5.24125 5.27124 5.37130 5.48532 5.72027 5.90636 6.08488 6.36245 6.56443 6.64779 7.02036 7.90688 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.021016 B = 0.009408 C = 0.006663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.977641 B = 2975.504797 C = 4201.210824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.074 3.926 3 N -0.360 5.360 4 N -0.491 5.491 5 H 0.436 0.564 6 C 0.213 3.787 7 C -0.358 4.358 8 S 0.086 5.914 9 C -0.199 4.199 10 C -0.167 4.167 11 C 0.074 3.926 12 C -0.512 4.512 13 H 0.074 0.926 14 C 0.008 3.992 15 N -0.807 5.807 16 Si 1.111 2.889 17 H -0.267 1.267 18 H -0.261 1.261 19 H -0.260 1.260 20 C -0.310 4.310 21 C -0.055 4.055 22 H 0.086 0.914 23 H 0.074 0.926 24 H 0.095 0.905 25 H 0.180 0.820 26 H 0.121 0.879 27 H 0.287 0.713 28 H 0.057 0.943 29 H 0.084 0.916 30 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.972 -3.321 -1.940 7.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.090 4.090 3 N -0.185 5.185 4 N -0.204 5.204 5 H 0.285 0.715 6 C 0.084 3.916 7 C -0.477 4.477 8 S 0.345 5.655 9 C -0.334 4.334 10 C -0.200 4.200 11 C 0.062 3.938 12 C -0.545 4.545 13 H 0.092 0.908 14 C -0.210 4.210 15 N -0.430 5.430 16 Si 0.927 3.073 17 H -0.191 1.191 18 H -0.186 1.186 19 H -0.185 1.185 20 C -0.321 4.321 21 C -0.113 4.113 22 H 0.104 0.896 23 H 0.093 0.907 24 H 0.113 0.887 25 H 0.197 0.803 26 H 0.139 0.861 27 H 0.100 0.900 28 H 0.076 0.924 29 H 0.102 0.898 30 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.818 -2.180 -1.579 6.410 hybrid contribution 0.735 -0.464 -0.207 0.894 sum -5.083 -2.644 -1.786 6.001 Atomic orbital electron populations 1.20254 0.84138 1.04032 1.03713 1.22530 0.98350 0.89767 0.98347 1.76952 0.86922 1.23987 1.30608 1.47051 1.06670 1.05163 1.61475 0.71532 1.19128 0.93155 0.83364 0.95922 1.21662 0.93192 0.95561 1.37243 1.82760 1.01242 1.01205 1.80299 1.25686 0.99588 1.01254 1.06872 1.21270 0.99670 0.92517 1.06573 1.18456 0.89898 0.94465 0.90938 1.20239 1.07810 0.93568 1.32875 0.90780 1.28342 0.93176 1.07573 0.91863 1.70639 1.39181 1.13502 1.19728 0.83053 0.77025 0.69446 0.77735 1.19129 1.18596 1.18498 1.20391 0.89910 0.97790 1.24019 1.19973 1.00767 0.89249 1.01348 0.89562 0.90692 0.88657 0.80319 0.86105 0.90023 0.92399 0.89763 0.92864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.65 10.24 71.23 0.73 -0.92 16 2 C 0.07 2.88 7.17 42.89 0.31 3.19 16 3 N -0.36 -15.99 12.66 -47.76 -0.60 -16.60 16 4 N -0.49 -23.33 7.10 -48.28 -0.34 -23.67 16 5 H 0.44 20.54 5.81 -213.37 -1.24 19.30 16 6 C 0.21 10.15 7.02 40.54 0.28 10.44 16 7 C -0.36 -17.25 6.50 24.68 0.16 -17.09 16 8 S 0.09 3.36 19.92 -56.49 -1.13 2.24 16 9 C -0.20 -7.76 11.05 66.69 0.74 -7.02 16 10 C -0.17 -7.61 8.17 22.70 0.19 -7.42 16 11 C 0.07 3.72 5.26 -20.84 -0.11 3.61 16 12 C -0.51 -25.64 7.97 23.19 0.18 -25.46 16 13 H 0.07 3.67 5.63 -2.91 -0.02 3.65 16 14 C 0.01 0.40 5.26 85.19 0.45 0.84 16 15 N -0.81 -40.42 12.69 21.81 0.28 -40.14 16 16 Si 1.11 40.59 29.97 68.60 2.06 42.65 16 17 H -0.27 -9.59 7.11 99.48 0.71 -8.89 16 18 H -0.26 -9.03 7.11 99.48 0.71 -8.33 16 19 H -0.26 -8.99 7.11 99.48 0.71 -8.28 16 20 C -0.31 -12.81 6.19 -19.53 -0.12 -12.93 16 21 C -0.06 -1.80 9.36 71.24 0.67 -1.14 16 22 H 0.09 1.99 8.14 -2.38 -0.02 1.97 16 23 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 24 H 0.09 2.03 7.21 -2.39 -0.02 2.01 16 25 H 0.18 5.49 8.06 -2.91 -0.02 5.47 16 26 H 0.12 5.55 7.25 -2.91 -0.02 5.53 16 27 H 0.29 14.85 6.38 -92.71 -0.59 14.26 16 28 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.08 2.20 7.21 -2.38 -0.02 2.18 16 30 H 0.05 1.81 5.53 -4.83 -0.03 1.78 16 Total: -1.00 -59.05 265.35 3.84 -55.21 By element: Atomic # 1 Polarization: 34.11 SS G_CDS: 0.11 Total: 34.22 kcal Atomic # 6 Polarization: -57.37 SS G_CDS: 3.47 Total: -53.90 kcal Atomic # 7 Polarization: -79.74 SS G_CDS: -0.67 Total: -80.41 kcal Atomic # 14 Polarization: 40.59 SS G_CDS: 2.06 Total: 42.65 kcal Atomic # 16 Polarization: 3.36 SS G_CDS: -1.13 Total: 2.24 kcal Total: -59.05 3.84 -55.21 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259837659.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.147 kcal (2) G-P(sol) polarization free energy of solvation -59.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds