Wall clock time and date at job start Mon Mar 30 2020 05:52:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00061 * 2 1 4 4 H 1.48505 * 109.46680 * 240.00102 * 3 2 1 5 5 H 1.48501 * 109.47238 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47165 * 120.00203 * 3 2 1 7 7 C 1.37881 * 119.99602 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99852 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00091 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46915 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47301 * 180.02562 * 10 9 7 12 12 N 1.27950 * 124.24422 * 89.97284 * 11 10 9 13 13 C 1.34675 * 117.83870 * 180.02562 * 12 11 10 14 14 C 1.40976 * 129.56247 * 179.71767 * 13 12 11 15 15 C 1.37776 * 120.24909 * 179.77543 * 14 13 12 16 16 N 1.39921 * 119.76848 * 180.27976 * 15 14 13 17 17 C 1.39397 * 120.46134 * 0.52887 * 15 14 13 18 18 C 1.37533 * 120.01251 * 359.74848 * 17 15 14 19 19 C 1.39351 * 120.21458 * 359.97371 * 18 17 15 20 20 S 1.70635 * 124.23988 * 269.97896 * 11 10 9 21 21 H 0.97000 * 120.00079 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.46815 * 60.00879 * 9 7 2 23 23 H 1.08994 * 109.47614 * 300.00420 * 9 7 2 24 24 H 1.08999 * 109.47334 * 60.00129 * 10 9 7 25 25 H 1.09002 * 109.47150 * 299.99848 * 10 9 7 26 26 H 1.08001 * 119.87147 * 0.27190 * 14 13 12 27 27 H 0.97005 * 120.00138 * 180.25907 * 16 15 14 28 28 H 0.97004 * 119.99993 * 0.24957 * 16 15 14 29 29 H 1.07998 * 119.98911 * 179.72067 * 17 15 14 30 30 H 1.08001 * 119.89547 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6963 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0017 10 6 2.2451 -3.6621 0.0027 11 6 1.4916 -4.9672 0.0033 12 7 1.1316 -5.5912 -1.0542 13 6 0.4619 -6.7499 -0.9034 14 6 -0.0496 -7.6253 -1.8829 15 6 -0.7082 -8.7763 -1.5092 16 7 -1.2068 -9.6409 -2.4898 17 6 -0.8858 -9.0828 -0.1610 18 6 -0.3978 -8.2365 0.8070 19 6 0.2756 -7.0714 0.4452 20 16 1.0116 -5.7981 1.4142 21 1 -0.4850 0.8400 -0.0004 22 1 0.6240 -2.5575 -0.8881 23 1 0.6245 -2.5563 0.8919 24 1 2.8718 -3.6036 0.8927 25 1 2.8718 -3.6052 -0.8873 26 1 0.0822 -7.3968 -2.9302 27 1 -1.6743 -10.4504 -2.2305 28 1 -1.0850 -9.4309 -3.4290 29 1 -1.4072 -9.9849 0.1233 30 1 -0.5368 -8.4756 1.8510 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259845414.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:02 Heat of formation + Delta-G solvation = 17.501369 kcal Electronic energy + Delta-G solvation = -14618.786432 eV Core-core repulsion = 12117.640684 eV Total energy + Delta-G solvation = -2501.145749 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.068 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.27375 -38.66615 -36.01497 -34.79084 -33.31716 -31.05790 -29.35989 -27.75759 -24.97299 -23.82531 -23.00265 -21.32664 -19.42691 -18.57615 -17.86737 -17.63615 -16.57649 -16.55737 -15.79971 -15.65540 -15.07099 -14.65010 -14.58724 -14.18416 -13.97319 -13.66432 -13.09501 -12.91784 -12.75039 -12.52436 -11.98803 -11.87815 -11.84207 -11.43696 -11.35920 -10.57593 -10.52211 -10.32116 -9.28749 -8.37199 -8.19978 -6.33166 -0.51385 0.35506 0.40256 0.85586 1.42437 1.46124 1.46837 1.54670 2.42137 2.74954 2.80163 3.13487 3.23190 3.73670 4.11589 4.20151 4.29652 4.43290 4.52643 4.63114 4.89558 4.97453 5.13052 5.18502 5.32877 5.43161 5.53564 5.62138 5.77732 6.15805 6.49805 6.74881 6.81828 7.01583 7.36505 8.91980 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.044533 B = 0.004528 C = 0.004341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.600193 B = 6182.693192 C = 6448.623183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.001 3.999 3 Si 0.971 3.029 4 H -0.267 1.267 5 H -0.284 1.284 6 H -0.262 1.262 7 C -0.545 4.545 8 H 0.071 0.929 9 C 0.042 3.958 10 C -0.036 4.036 11 C 0.104 3.896 12 N -0.517 5.517 13 C 0.101 3.899 14 C -0.188 4.188 15 C 0.237 3.763 16 N -0.859 5.859 17 C -0.162 4.162 18 C -0.026 4.026 19 C -0.257 4.257 20 S 0.103 5.897 21 H 0.264 0.736 22 H -0.016 1.016 23 H -0.002 1.002 24 H 0.096 0.904 25 H 0.083 0.917 26 H 0.127 0.873 27 H 0.414 0.586 28 H 0.407 0.593 29 H 0.174 0.826 30 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.666 -21.032 0.369 21.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.197 4.197 3 Si 0.795 3.205 4 H -0.192 1.192 5 H -0.210 1.210 6 H -0.186 1.186 7 C -0.582 4.582 8 H 0.089 0.911 9 C 0.003 3.997 10 C -0.077 4.077 11 C -0.179 4.179 12 N -0.232 5.232 13 C -0.019 4.019 14 C -0.216 4.216 15 C 0.127 3.873 16 N -0.400 5.400 17 C -0.186 4.186 18 C -0.049 4.049 19 C -0.376 4.376 20 S 0.359 5.641 21 H 0.073 0.927 22 H 0.003 0.997 23 H 0.016 0.984 24 H 0.115 0.885 25 H 0.102 0.898 26 H 0.145 0.855 27 H 0.246 0.754 28 H 0.236 0.764 29 H 0.191 0.809 30 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -1.532 -20.469 0.943 20.548 hybrid contribution -0.233 0.586 -1.227 1.380 sum -1.765 -19.883 -0.284 19.963 Atomic orbital electron populations 1.70120 1.08064 1.28006 1.51227 1.26029 0.95735 1.03584 0.94386 0.85409 0.78162 0.77534 0.79393 1.19167 1.20989 1.18608 1.21586 0.93923 0.91477 1.51263 0.91068 1.18872 0.93768 0.91987 0.95044 1.20480 0.97229 0.86179 1.03811 1.27093 0.99016 1.00491 0.91318 1.66219 1.16023 1.08544 1.32464 1.19239 0.98076 0.91749 0.92859 1.19883 1.07839 0.95762 0.98077 1.17421 0.90819 0.88750 0.90261 1.42430 1.64601 1.26020 1.06901 1.20998 1.05362 1.02493 0.89761 1.20477 0.93432 0.89562 1.01389 1.23899 1.13589 1.04100 0.96039 1.83464 1.55216 1.14936 1.10523 0.92694 0.99724 0.98360 0.88522 0.89848 0.85476 0.75434 0.76368 0.80905 0.82476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.17 13.29 21.45 0.28 -57.89 16 2 C 0.00 0.04 5.46 84.66 0.46 0.50 16 3 Si 0.97 44.48 29.54 68.60 2.03 46.51 16 4 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 5 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 6 H -0.26 -11.31 7.11 99.48 0.71 -10.61 16 7 C -0.54 -31.35 9.11 25.60 0.23 -31.12 16 8 H 0.07 3.82 7.74 -2.91 -0.02 3.80 16 9 C 0.04 2.33 4.96 29.85 0.15 2.47 16 10 C -0.04 -1.61 5.71 29.85 0.17 -1.44 16 11 C 0.10 4.41 6.54 88.67 0.58 4.99 16 12 N -0.52 -22.60 10.57 -182.52 -1.93 -24.53 16 13 C 0.10 3.77 6.99 39.78 0.28 4.05 16 14 C -0.19 -5.59 9.93 22.83 0.23 -5.37 16 15 C 0.24 5.00 6.73 38.02 0.26 5.26 16 16 N -0.86 -10.57 9.09 -51.60 -0.47 -11.04 16 17 C -0.16 -2.98 9.88 22.38 0.22 -2.75 16 18 C -0.03 -0.60 10.05 22.37 0.22 -0.38 16 19 C -0.26 -8.41 6.55 22.94 0.15 -8.26 16 20 S 0.10 3.59 23.11 -56.49 -1.31 2.29 16 21 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 22 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 23 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 24 H 0.10 3.83 8.14 -2.39 -0.02 3.81 16 25 H 0.08 3.66 8.14 -2.39 -0.02 3.65 16 26 H 0.13 3.63 8.06 -2.91 -0.02 3.61 16 27 H 0.41 2.64 8.84 -92.70 -0.82 1.82 16 28 H 0.41 4.22 8.83 -92.71 -0.82 3.40 16 29 H 0.17 1.66 8.06 -2.91 -0.02 1.64 16 30 H 0.16 2.66 8.06 -2.91 -0.02 2.63 16 Total: -1.00 -73.65 279.28 1.10 -72.55 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: -0.46 Total: 4.15 kcal Atomic # 6 Polarization: -35.00 SS G_CDS: 2.95 Total: -32.05 kcal Atomic # 7 Polarization: -91.34 SS G_CDS: -2.11 Total: -93.46 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Atomic # 16 Polarization: 3.59 SS G_CDS: -1.31 Total: 2.29 kcal Total: -73.65 1.10 -72.55 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259845414.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.052 kcal (2) G-P(sol) polarization free energy of solvation -73.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.550 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds