Wall clock time and date at job start Mon Mar 30 2020 05:41:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50700 * 109.46716 * 2 1 4 4 O 1.33893 * 125.91923 * 269.68515 * 3 2 1 5 5 C 1.34601 * 111.02542 * 180.26960 * 4 3 2 6 6 C 1.47735 * 125.30321 * 180.02562 * 5 4 3 7 7 C 1.39563 * 122.82621 * 359.73429 * 6 5 4 8 8 C 1.32964 * 114.92533 * 179.76144 * 7 6 5 9 9 S 1.75791 * 110.02005 * 0.48012 * 8 7 6 10 10 C 1.34919 * 122.83483 * 180.02562 * 6 5 4 11 11 C 1.35562 * 109.39900 * 359.97438 * 5 4 3 12 12 C 1.39235 * 125.92009 * 90.00486 * 3 2 1 13 13 C 1.41438 * 127.28774 * 359.72601 * 12 3 2 14 14 H 1.08000 * 120.00404 * 0.02562 * 13 12 3 15 15 C 1.39544 * 119.99913 * 180.02562 * 13 12 3 16 16 N 1.31103 * 119.99797 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 119.99958 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47128 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47362 * 119.99927 * 17 15 13 20 20 H 1.48504 * 109.46765 * 240.00198 * 17 15 13 21 21 H 1.09003 * 109.47210 * 299.99665 * 1 2 3 22 22 H 1.09000 * 109.47449 * 59.99729 * 1 2 3 23 23 H 1.09000 * 109.47035 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.46770 * 240.00493 * 2 1 3 25 25 H 1.09000 * 109.47025 * 119.99623 * 2 1 3 26 26 H 1.07997 * 122.53620 * 359.97438 * 7 6 5 27 27 H 1.08002 * 124.98249 * 180.24553 * 8 7 6 28 28 H 1.08008 * 125.23689 * 359.95851 * 10 6 5 29 29 H 1.08002 * 127.00493 * 179.97438 * 11 5 4 30 30 H 0.97003 * 120.00334 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 8 2.2996 2.1594 -1.0843 5 6 2.7369 3.3845 -0.7383 6 6 3.1212 4.4525 -1.6840 7 6 3.0722 4.2900 -3.0693 8 6 3.4483 5.3543 -3.7720 9 16 3.9126 6.6579 -2.6879 10 6 3.5544 5.6651 -1.2814 11 6 2.7687 3.4862 0.6131 12 6 2.3045 2.1910 1.1276 13 6 2.1634 1.8075 2.4816 14 1 1.8089 0.8176 2.7285 15 6 2.4822 2.7081 3.4987 16 7 2.9129 3.9096 3.1991 17 14 2.2964 2.2014 5.2871 18 1 1.7970 0.8046 5.3565 19 1 3.6139 2.2908 5.9663 20 1 1.3301 3.1062 5.9600 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8932 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 2.7498 3.3706 -3.5353 27 1 3.4693 5.4084 -4.8505 28 1 3.6636 5.9781 -0.2535 29 1 3.0743 4.3443 1.1934 30 1 3.1342 4.5358 3.9061 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259849235.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:24 Heat of formation + Delta-G solvation = 23.607592 kcal Electronic energy + Delta-G solvation = -15239.441970 eV Core-core repulsion = 12706.268256 eV Total energy + Delta-G solvation = -2533.173714 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 248.061 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.43054 -37.24596 -33.96406 -32.77796 -30.84734 -29.44983 -27.06267 -25.48902 -23.79588 -21.93444 -20.00359 -19.28565 -18.15948 -17.62414 -16.05424 -15.41898 -14.62387 -14.55774 -14.15321 -13.46571 -13.15334 -12.63069 -12.59057 -12.40091 -12.02579 -11.84461 -11.52819 -11.29190 -11.27935 -10.85426 -10.77249 -10.47381 -10.31103 -9.82900 -9.52784 -9.48197 -8.80743 -8.34173 -7.76300 -6.62578 -6.57219 -4.20851 1.28917 1.98492 2.27436 2.59907 2.99677 3.12845 3.17868 3.74772 4.02353 4.31769 4.42938 5.21241 5.42363 5.62762 5.81850 5.89714 5.95337 6.09595 6.21154 6.39830 6.48232 6.61409 6.71086 6.75599 6.89670 6.96261 7.20717 7.26578 7.54460 7.79462 8.02218 8.43017 8.86708 8.94222 9.12977 10.39971 Molecular weight = 248.06amu Principal moments of inertia in cm(-1) A = 0.022373 B = 0.007004 C = 0.005428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.194130 B = 3996.664055 C = 5157.494810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.000 4.000 3 C -0.192 4.192 4 O -0.195 6.195 5 C -0.021 4.021 6 C 0.002 3.998 7 C -0.118 4.118 8 C -0.221 4.221 9 S 0.074 5.926 10 C -0.210 4.210 11 C -0.166 4.166 12 C 0.032 3.968 13 C -0.437 4.437 14 H 0.075 0.925 15 C 0.069 3.931 16 N -0.824 5.824 17 Si 0.914 3.086 18 H -0.263 1.263 19 H -0.276 1.276 20 H -0.276 1.276 21 H 0.058 0.942 22 H 0.046 0.954 23 H 0.043 0.957 24 H 0.049 0.951 25 H 0.074 0.926 26 H 0.141 0.859 27 H 0.161 0.839 28 H 0.169 0.831 29 H 0.163 0.837 30 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.337 2.001 -6.979 7.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.037 4.037 3 C -0.241 4.241 4 O -0.097 6.097 5 C -0.072 4.072 6 C -0.009 4.009 7 C -0.149 4.149 8 C -0.355 4.355 9 S 0.336 5.664 10 C -0.345 4.345 11 C -0.187 4.187 12 C 0.030 3.970 13 C -0.469 4.469 14 H 0.093 0.907 15 C -0.143 4.143 16 N -0.454 5.454 17 Si 0.739 3.261 18 H -0.187 1.187 19 H -0.201 1.201 20 H -0.202 1.202 21 H 0.077 0.923 22 H 0.065 0.935 23 H 0.062 0.938 24 H 0.068 0.932 25 H 0.092 0.908 26 H 0.158 0.842 27 H 0.178 0.822 28 H 0.187 0.813 29 H 0.181 0.819 30 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.910 3.602 -7.374 8.257 hybrid contribution -0.539 -1.452 1.224 1.974 sum 0.371 2.150 -6.151 6.526 Atomic orbital electron populations 1.21796 0.96579 0.99821 1.02005 1.19352 0.94250 0.89203 1.00928 1.22187 1.22850 0.95577 0.83518 1.83324 1.68906 1.21786 1.35696 1.19491 1.10035 0.85161 0.92524 1.16968 1.00513 0.91876 0.91530 1.20267 1.01971 0.99697 0.92926 1.25293 1.10167 0.97188 1.02879 1.83887 1.67615 1.17859 0.97027 1.25511 1.10155 0.96772 1.02087 1.23555 1.04151 1.00463 0.90570 1.19036 0.94910 0.90447 0.92643 1.18799 1.39404 0.99632 0.89036 0.90668 1.25756 0.92932 0.94347 1.01314 1.69762 1.35864 1.05507 1.34225 0.86166 0.78441 0.79617 0.81841 1.18708 1.20147 1.20154 0.92265 0.93505 0.93805 0.93187 0.90775 0.84153 0.82178 0.81334 0.81936 0.91587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 9.89 37.16 0.37 -2.25 16 2 C 0.00 0.00 6.28 -27.88 -0.18 -0.17 16 3 C -0.19 -4.82 6.74 -33.94 -0.23 -5.05 16 4 O -0.20 -4.89 10.46 5.98 0.06 -4.83 16 5 C -0.02 -0.52 7.04 -36.66 -0.26 -0.78 16 6 C 0.00 0.05 5.79 -106.70 -0.62 -0.57 16 7 C -0.12 -2.05 9.95 -40.91 -0.41 -2.46 16 8 C -0.22 -3.18 11.18 28.91 0.32 -2.86 16 9 S 0.07 1.06 23.32 -107.50 -2.51 -1.45 16 10 C -0.21 -3.83 10.69 29.55 0.32 -3.51 16 11 C -0.17 -4.39 9.35 -37.04 -0.35 -4.73 16 12 C 0.03 0.88 6.11 -104.81 -0.64 0.24 16 13 C -0.44 -11.77 9.12 -37.88 -0.35 -12.12 16 14 H 0.08 1.94 7.37 -52.49 -0.39 1.55 16 15 C 0.07 1.78 5.49 -17.38 -0.10 1.69 16 16 N -0.82 -21.57 10.45 55.53 0.58 -20.99 16 17 Si 0.91 19.29 29.56 -169.99 -5.02 14.26 16 18 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 19 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 20 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 21 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 22 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 23 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 25 H 0.07 1.48 7.61 -51.93 -0.40 1.09 16 26 H 0.14 2.33 8.06 -52.49 -0.42 1.91 16 27 H 0.16 1.78 8.06 -52.49 -0.42 1.35 16 28 H 0.17 3.04 7.55 -52.48 -0.40 2.64 16 29 H 0.16 4.34 5.63 -52.49 -0.30 4.05 16 30 H 0.27 6.56 8.30 -40.82 -0.34 6.22 16 LS Contribution 277.88 15.07 4.19 4.19 Total: -1.00 -28.51 277.88 -7.95 -36.47 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -3.14 Total: 4.92 kcal Atomic # 6 Polarization: -30.46 SS G_CDS: -2.11 Total: -32.57 kcal Atomic # 7 Polarization: -21.57 SS G_CDS: 0.58 Total: -20.99 kcal Atomic # 8 Polarization: -4.89 SS G_CDS: 0.06 Total: -4.83 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -5.02 Total: 14.26 kcal Atomic # 16 Polarization: 1.06 SS G_CDS: -2.51 Total: -1.45 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -28.51 -7.95 -36.47 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259849235.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.074 kcal (2) G-P(sol) polarization free energy of solvation -28.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds